Rmu_sc0004657.1_g000005

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004657.1
OG0000122
Physical Location & Seq
Forward (+)
22090 .. 22809
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004657.1_g000005.1.cds

Sequence Viewer

Length: 720 bp
atgtcaaatcatgagccaaaaccgaagcgatcaaaattcattgactcatggtttaaaagaaatgttgagtcgtcaagttcaaatgtggtttctgaaccttccatatcctctccaaatattgatgttgaaccccaaccttccattcctgaaccacaaaataatatcaacactcttgaacgtgatcctggattacgttgtgccatatggaaatatccagtgaatgagcgtgatagtattcaaaaagcctatgttttgttgggtccatttcaacctgagttagaatttccattcactgaagaagggagtcaacaacgtagatttcagttttcttggttcaaggacaatccatggcttgaatattcaattgctcttaatagggcgaattgcttcccttgttttctacttgacactaaagattctcactatccagcattcaccgttgatgggtttaaggcttggaagagggtttctggtggtgataatgtgttgacgaagcatgtaggaggccttaattctccccatcatgctgcaatgcaaaaatgggatttattaagaaatcctaccaaacaaattgaaacagtttttcagtcaaaatctagtaagaatatagaggacaatcgattgaggcttaaggcttcaatagaaagtgtaagattgctagctaatcaaggagctccttttagaggccatgatgaaactgaaaattcattgaatgcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

239

Amino Acids

27.36

Weight (kDa)

7.74

Isoelectric Point (pI)

68.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 3 cut(s) 35, 281, 703
AcuI CTGAAG 1 cut(s) 315
AfiI CCNNNNNNNGG 2 cut(s) 444, 683
AflII CTTAAG 1 cut(s) 629
AjnI CCWGG 1 cut(s) 184
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 2 cut(s) 662, 674
AluI AGCT 2 cut(s) 662, 674
Alw21I GWGCWC 1 cut(s) 676
AlwI GGATC 1 cut(s) 176
AoxI GGCC 2 cut(s) 505, 685
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 3 cut(s) 35, 281, 703
Asp700I GAANNNNTTC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 427, 488
AsuNHI GCTAGC 1 cut(s) 658
AvaII GGWCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 1 cut(s) 514
BccI CCATC 2 cut(s) 437, 528
BciT130I CCWGG 1 cut(s) 186
BfaI CTAG 2 cut(s) 597, 659
BfrI CTTAAG 1 cut(s) 629
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 186
BmtI GCTAGC 1 cut(s) 662
Bsa29I ATCGAT 1 cut(s) 619
BsaJI CCNNGG 1 cut(s) 347
Bsc4I CCNNNNNNNGG 2 cut(s) 444, 683
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 619
BseDI CCNNGG 1 cut(s) 347
BseLI CCNNNNNNNGG 2 cut(s) 444, 683
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 514
BshFI GGCC 2 cut(s) 507, 687
BshVI ATCGAT 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 676
BslI CCNNNNNNNGG 2 cut(s) 444, 683
BsmI GAATGC 2 cut(s) 431, 718
BsnI GGCC 2 cut(s) 507, 687
Bsp1286I GDGCHC 1 cut(s) 676
Bsp143I GATC 2 cut(s) 29, 181
Bsp19I CCATGG 1 cut(s) 347
BspANI GGCC 2 cut(s) 507, 687
BspCNI CTCAG 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 619
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 261
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 1 cut(s) 176
BspTI CTTAAG 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 2 cut(s) 29, 181
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 439, 580
Bst6I CTCTTC 1 cut(s) 455
BstAFI CTTAAG 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 347
BstENI CCTNNNNNAGG 1 cut(s) 681
BstKTI GATC 2 cut(s) 32, 184
BstMBI GATC 2 cut(s) 29, 181
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 514
Bsu15I ATCGAT 1 cut(s) 619
BsuRI GGCC 2 cut(s) 507, 687
BsuTUI ATCGAT 1 cut(s) 619
BtgI CCRYGG 1 cut(s) 347
BtsIMutI CAGTG 2 cut(s) 222, 291
Cac8I GCNNGC 1 cut(s) 660
CciI TCATGA 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 619
CviAII CATG 6 cut(s) 11, 48, 348, 497, 524, 689
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 31, 183
DpnII GATC 2 cut(s) 29, 181
DraI TTTAAA 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Ecl136II GAGCTC 1 cut(s) 674
Eco130I CCWWGG 1 cut(s) 347
Eco147I AGGCCT 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 676
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 674
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 6 cut(s) 14, 51, 351, 500, 527, 692
FatI CATG 6 cut(s) 10, 47, 347, 496, 523, 688
FauNDI CATATG 1 cut(s) 203
Fnu4HI GCNGC 1 cut(s) 528
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 2 cut(s) 597, 659
GluI GCNGC 1 cut(s) 528
HaeIII GGCC 2 cut(s) 507, 687
Hin1II CATG 6 cut(s) 14, 51, 351, 500, 527, 692
HincII GTYRAC 2 cut(s) 308, 489
HindII GTYRAC 2 cut(s) 308, 489
HinfI GANTC 4 cut(s) 44, 68, 304, 416
HphI GGTGA 2 cut(s) 427, 488
Hpy166II GTNNAC 2 cut(s) 308, 489
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 11, 146, 173
Hpy8I GTNNAC 2 cut(s) 308, 489
HpyAV CCTTC 3 cut(s) 108, 147, 293
HpyCH4III ACNGT 2 cut(s) 439, 580
HpyCH4IV ACGT 3 cut(s) 178, 193, 313
HpyCH4V TGCA 2 cut(s) 530, 535
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 3 cut(s) 178, 193, 313
Hsp92II CATG 6 cut(s) 14, 51, 351, 500, 527, 692
Kzo9I GATC 2 cut(s) 29, 181
LmnI GCTCC 2 cut(s) 671, 679
LpnPI CCDG 7 cut(s) 159, 171, 198, 228, 285, 441, 456
Lsp1109I GCAGC 1 cut(s) 514
MaeI CTAG 2 cut(s) 597, 659
MaeII ACGT 3 cut(s) 178, 193, 313
MalI GATC 2 cut(s) 31, 183
MboI GATC 2 cut(s) 29, 181
MboII GAAGA 2 cut(s) 308, 472
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 7 cut(s) 35, 281, 363, 382, 511, 570, 703
MlyI GAGTC 3 cut(s) 38, 77, 313
MnlI CCTC 6 cut(s) 118, 456, 497, 604, 618, 677
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 6 cut(s) 54, 372, 450, 510, 551, 630
MspCI CTTAAG 1 cut(s) 629
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 363
Mva1269I GAATGC 2 cut(s) 431, 718
MvaI CCWGG 1 cut(s) 186
NcoI CCATGG 1 cut(s) 347
NdeI CATATG 1 cut(s) 203
NdeII GATC 2 cut(s) 29, 181
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 6 cut(s) 14, 51, 351, 500, 527, 692
NlaIV GGNNCC 1 cut(s) 261
NspI RCATGY 1 cut(s) 500
PagI TCATGA 1 cut(s) 10
PceI AGGCCT 1 cut(s) 507
PctI GAATGC 2 cut(s) 431, 718
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 416
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 1 cut(s) 529
PleI GAGTC 3 cut(s) 38, 76, 312
PpsI GAGTC 3 cut(s) 38, 76, 312
Psp124BI GAGCTC 1 cut(s) 676
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 260
SacI GAGCTC 1 cut(s) 676
SaqAI TTAA 6 cut(s) 54, 372, 450, 510, 551, 630
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 2 cut(s) 29, 181
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 3 cut(s) 38, 77, 313
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 676
SetI ASST 8 cut(s) 100, 139, 181, 196, 274, 316, 664, 676
SinI GGWCC 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 7 cut(s) 35, 281, 363, 382, 511, 570, 703
SseBI AGGCCT 1 cut(s) 507
SspI AATATT 2 cut(s) 118, 359
SspMI CTAG 2 cut(s) 597, 659
SstI GAGCTC 1 cut(s) 676
StuI AGGCCT 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 2 cut(s) 439, 580
TaiI ACGT 3 cut(s) 181, 196, 316
TaqI TCGA 1 cut(s) 619
TasI AATT 7 cut(s) 35, 281, 363, 382, 511, 570, 703
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 6 cut(s) 54, 372, 450, 510, 551, 630
Tru9I TTAA 6 cut(s) 54, 372, 450, 510, 551, 630
TscAI CASTG 2 cut(s) 222, 298
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 3 cut(s) 28, 696, 708
TspRI CASTG 2 cut(s) 222, 298
Vha464I CTTAAG 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 260
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 3 cut(s) 35, 281, 703
XceI RCATGY 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 2 cut(s) 597, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.