AT1G41920

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
15680978 .. 15684487
3510 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G41920.1

Sequence Viewer

Length: 1491 bp
ATGAAAGAGATAAGATATTTAGTACGACAAAGATTACCTTTTCGAGGTCACGATGAGTCAGATGAATCAGCTAATAGGGGAAATTTCTTAGAGCTTGTGAAATATACAGTAGGGCAGAATGAGGTTATAAGCAAAGTTGTGTTGGAGAATGCTCCAAAAAACAATCAGATGGTGTTCGATGAAATGTCTGAACCACTAATTCCAGAGACTCGTGACCCTGTACCAAGTTCTTTCTTGTTACTCGACCTCATACTCGACTACCCAGTTGTCTGGCAACAGACTGTGCAGTCGAATGTTTCTGATAAAGAACAAATGGCAGTGGTTTTTCGTTTTGTTGATAAACATGGGACGGTGAAAGAAAGATTCATTGGTCTTATCCATGTTAAAGAAACATCTTCTGCATCTCTGAAATGTGCTATTGATTCATTGTTTGCTAAACGTGGATTGAGTATGAAACAGTTAAGAGGACAAGGCTATGATGGAGCAAACAATATGAAAGGTGAATTCAATTGGTTGAGATCTCTGATTTTAAGAGAGAATAGTTCTGCTTATTACATCCATTGTTTTGCTCATCAGCTTCAGTTAGTGGTCGTGGCAGTTGCTAAAAAACAATTTGAAGTTGGAGATTTCTTTGATATGATTTCTGCCTTGCTAAATGTGGTTGGAGCTTCTTGTAAGGGAAAAGATAGGATTCGAGAAGAATATCTAAAAGAGATAGAGGAAGGAATCAATCAAGGTGAAATTAAGACAGGAAAGGGATTGAATCAAGAGCTTTCATTACAGAGACCTGGTAATACTCGTTGGGGTACTCATTACACAACATTACACCGATTAGCTCATTTATTCTCTGTTATCATTAAACTGCTTGAGTTTGTTGAAGAGGAGGGAACTGATAGTACCAAAAGACGACAAGCTAATGGTCTTCTCAAGTACTTTAATACTTTTGACTTTGCGTTCTACTTACAGTTGATGTTGCTTCTTCTTGGACTCACAAATAGTTTATCAGTGGCTCTACAAAAGAAAGACCAAGACATTTTGAATCCTATGTCACTAGTGAAATCTACCAAGCAACAATTATGCAAGCTCAGAGATGATGGATGGGATTCTTTGGTTAATGAAGTTTTTTCTTTTTGTAAGAAGCATGACATTGAGTTGGTTATTATGGATGGAGAATTTGTTAATCCAAGAAACCCAAGAAAAAGAAGCAACATGACCAACTTCCATCATTATCAAGTGGAGTGTTTTTACACTATATTAGATATGCAAATTCAAGAGTTTAATGATCGTTTCGATGAGGTAAACACTGAATTACTTAGTTGTGTTGCTTCTTTAAGCCCTATTGATTCGTTTCATGAGTTTGATCAGTTGAAAGTTCTGAGATTGTCTGAGTTTTATCCACAAGATTTTACTCATGTCGATCGGAGATCACTCGAGCATCAGCTTGGTCTTTACATTGACAATATTCGAGAAGATGAAAGATTTGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

496

Amino Acids

57.44

Weight (kDa)

5.92

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 5 - 170 1.5e-62 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AasI GACNNNNNNGTC 1 cut(s) 286
AcsI RAATTY 4 cut(s) 82, 503, 1172, 1266
AcuI CTGAAG 1 cut(s) 563
AfaI GTAC 5 cut(s) 24, 222, 808, 898, 932
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 7 cut(s) 508, 617, 763, 878, 1039, 1271, 1369
AhlI ACTAGT 1 cut(s) 1051
AjnI CCWGG 1 cut(s) 787
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AluBI AGCT 9 cut(s) 71, 94, 577, 668, 772, 836, 914, 1084, 1441
AluI AGCT 9 cut(s) 71, 94, 577, 668, 772, 836, 914, 1084, 1441
Alw26I GTCTC 2 cut(s) 200, 778
Ama87I CYCGRG 1 cut(s) 1430
ApoI RAATTY 4 cut(s) 82, 503, 1172, 1266
AsuHPI GGTGA 3 cut(s) 364, 512, 749
AvaI CYCGRG 1 cut(s) 1430
BauI CACGAG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 914
BccI CCATC 6 cut(s) 163, 473, 1088, 1092, 1160, 1230
BciT130I CCWGG 1 cut(s) 789
BclI TGATCA 1 cut(s) 1360
BcoDI GTCTC 2 cut(s) 200, 778
BcuI ACTAGT 1 cut(s) 1051
BfaI CTAG 1 cut(s) 1052
BglII AGATCT 1 cut(s) 518
BmcAI AGTACT 1 cut(s) 932
Bme1390I CCNGG 1 cut(s) 789
BmeT110I CYCGRG 1 cut(s) 1430
BmrFI CCNGG 1 cut(s) 789
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 2 cut(s) 410, 1444
BmuI ACTGGG 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 914
BpuEI CTTGAG 2 cut(s) 887, 911
BsaI GGTCTC 1 cut(s) 778
BsaXI ACNNNNNCTCC 2 cut(s) 1161, 1191
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 789
BseGI GGATG 3 cut(s) 555, 1103, 1171
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 3 cut(s) 1099, 1367, 1377
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 896
BsgI GTGCAG 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 1420
BsiEI CGRYCG 1 cut(s) 1420
BsiHKCI CYCGRG 1 cut(s) 1430
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 2 cut(s) 200, 778
BsmFI GGGAC 1 cut(s) 361
BsmI GAATGC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 778
BsoBI CYCGRG 1 cut(s) 1430
Bsp143I GATC 5 cut(s) 518, 1282, 1360, 1417, 1424
BspCNI CTCAG 3 cut(s) 1098, 1368, 1378
BspHI TCATGA 1 cut(s) 1351
BspTNI GGTCTC 1 cut(s) 778
BsrI ACTGG 1 cut(s) 263
BssMI GATC 5 cut(s) 518, 1282, 1360, 1417, 1424
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 5 cut(s) 109, 283, 352, 459, 966
Bst6I CTCTTC 1 cut(s) 873
BstC8I GCNNGC 1 cut(s) 1082
BstDEI CTNAG 5 cut(s) 88, 1085, 1313, 1376, 1386
BstENI CCTNNNNNAGG 1 cut(s) 42
BstF5I GGATG 3 cut(s) 555, 1103, 1171
BstKTI GATC 5 cut(s) 521, 1285, 1363, 1420, 1427
BstMAI GTCTC 2 cut(s) 200, 778
BstMBI GATC 5 cut(s) 518, 1282, 1360, 1417, 1424
BstMCI CGRYCG 1 cut(s) 1420
BstNI CCWGG 1 cut(s) 789
BstSCI CCNGG 1 cut(s) 787
BstV2I GAAGAC 1 cut(s) 914
BstX2I RGATCY 1 cut(s) 518
BstXI CCANNNNNNTGG 1 cut(s) 270
BstYI RGATCY 1 cut(s) 518
BtsCI GGATG 3 cut(s) 555, 1103, 1171
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 3 cut(s) 324, 1011, 1302
Cac8I GCNNGC 1 cut(s) 1082
CciI TCATGA 1 cut(s) 1351
CsiI ACCWGGT 1 cut(s) 787
Csp6I GTAC 5 cut(s) 23, 221, 807, 897, 931
CviAII CATG 6 cut(s) 344, 380, 1142, 1210, 1352, 1412
CviQI GTAC 5 cut(s) 23, 221, 807, 897, 931
DdeI CTNAG 5 cut(s) 88, 1085, 1313, 1376, 1386
DpnI GATC 5 cut(s) 520, 1284, 1362, 1419, 1426
DpnII GATC 5 cut(s) 518, 1282, 1360, 1417, 1424
DrdI GACNNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Eco31I GGTCTC 1 cut(s) 778
Eco57I CTGAAG 1 cut(s) 563
Eco88I CYCGRG 1 cut(s) 1430
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 787
FaeI CATG 6 cut(s) 347, 383, 1145, 1213, 1355, 1415
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FaqI GGGAC 1 cut(s) 361
FatI CATG 6 cut(s) 343, 379, 1141, 1209, 1351, 1411
FbaI TGATCA 1 cut(s) 1360
FokI GGATG 3 cut(s) 542, 1110, 1178
FspBI CTAG 1 cut(s) 1052
Hin1II CATG 6 cut(s) 347, 383, 1145, 1213, 1355, 1415
HphI GGTGA 3 cut(s) 364, 512, 749
Hpy166II GTNNAC 1 cut(s) 1300
Hpy188III TCNNGA 8 cut(s) 50, 203, 212, 695, 767, 1271, 1352, 1466
Hpy8I GTNNAC 1 cut(s) 1300
HpyAV CCTTC 1 cut(s) 716
HpyCH4III ACNGT 5 cut(s) 109, 283, 352, 459, 966
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 286, 401, 1080, 1264
HpyF3I CTNAG 5 cut(s) 88, 1085, 1313, 1376, 1386
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 6 cut(s) 347, 383, 1145, 1213, 1355, 1415
Ksp22I TGATCA 1 cut(s) 1360
Kzo9I GATC 5 cut(s) 518, 1282, 1360, 1417, 1424
LmnI GCTCC 3 cut(s) 157, 482, 665
LpnPI CCDG 7 cut(s) 216, 231, 256, 276, 735, 774, 801
LweI GCATC 2 cut(s) 410, 1444
MabI ACCWGGT 1 cut(s) 787
MaeI CTAG 1 cut(s) 1052
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 4 cut(s) 47, 212, 237, 1047
MalI GATC 5 cut(s) 520, 1284, 1362, 1419, 1426
MboI GATC 5 cut(s) 518, 1282, 1360, 1417, 1424
MboII GAAGA 6 cut(s) 387, 710, 890, 914, 971, 1481
MfeI CAATTG 1 cut(s) 508
MflI RGATCY 1 cut(s) 518
MlyI GAGTC 3 cut(s) 65, 202, 981
MmeI TCCRAC 3 cut(s) 123, 601, 643
MnlI CCTC 8 cut(s) 38, 115, 257, 458, 712, 874, 877, 1288
MspR9I CCNGG 1 cut(s) 789
MunI CAATTG 1 cut(s) 508
Mva1269I GAATGC 1 cut(s) 154
MvaI CCWGG 1 cut(s) 789
NdeII GATC 5 cut(s) 518, 1282, 1360, 1417, 1424
NlaIII CATG 6 cut(s) 347, 383, 1145, 1213, 1355, 1415
NmuCI GTSAC 3 cut(s) 47, 212, 1047
PaeR7I CTCGAG 1 cut(s) 1430
PagI TCATGA 1 cut(s) 1351
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 9 cut(s) 65, 363, 422, 691, 726, 763, 1039, 1103, 1343
Ple19I CGATCG 1 cut(s) 1420
PleI GAGTC 3 cut(s) 64, 202, 981
PpsI GAGTC 3 cut(s) 64, 202, 981
PsiI TTATAA 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 787
PspGI CCWGG 1 cut(s) 787
PspXI VCTCGAGB 1 cut(s) 1430
PsrI GAACNNNNNNTAC 2 cut(s) 880, 912
PsuI RGATCY 1 cut(s) 518
PvuI CGATCG 1 cut(s) 1420
RsaI GTAC 5 cut(s) 24, 222, 808, 898, 932
RsaNI GTAC 5 cut(s) 23, 221, 807, 897, 931
Sau3AI GATC 5 cut(s) 518, 1282, 1360, 1417, 1424
ScaI AGTACT 1 cut(s) 932
SchI GAGTC 3 cut(s) 65, 202, 981
ScrFI CCNGG 1 cut(s) 789
SexAI ACCWGGT 1 cut(s) 787
SfaNI GCATC 2 cut(s) 410, 1444
Sfr274I CTCGAG 1 cut(s) 1430
SlaI CTCGAG 1 cut(s) 1430
SmlI CTYRAG 3 cut(s) 866, 926, 1430
SmoI CTYRAG 3 cut(s) 866, 926, 1430
SpeI ACTAGT 1 cut(s) 1051
SspI AATATT 1 cut(s) 1462
SspMI CTAG 1 cut(s) 1052
StyD4I CCNGG 1 cut(s) 787
TaaI ACNGT 5 cut(s) 109, 283, 352, 459, 966
TaiI ACGT 1 cut(s) 442
TatI WGTACW 1 cut(s) 930
TfiI GAWTC 9 cut(s) 65, 363, 422, 691, 726, 763, 1039, 1103, 1343
TscAI CASTG 3 cut(s) 324, 1011, 1309
TseFI GTSAC 3 cut(s) 47, 212, 1047
Tsp45I GTSAC 3 cut(s) 47, 212, 1047
TspRI CASTG 3 cut(s) 324, 1011, 1309
XagI CCTNNNNNAGG 1 cut(s) 42
XapI RAATTY 4 cut(s) 82, 503, 1172, 1266
XhoI CTCGAG 1 cut(s) 1430
XspI CTAG 1 cut(s) 1052
ZrmI AGTACT 1 cut(s) 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.