RchiOBHm_Chr6g0246041

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000122
Physical Location & Seq
Forward (+)
1747092 .. 1748575
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22054

Sequence Viewer

Length: 1290 bp
ATGCGTGGTGAGTGGAATGGATTGCAAGCACTATTTTTGCAAAAGTGTCCATATGCATATTATGTACATTGTTTTGCTCATCGCCTACAACTAGCTTTGAATGCTGCAGCTAAAGATGTGGGTGTTATCTATTTATTCTTTCAAATGCTGACTAGTATCATCAATGTTGACTCATCTGCTAAGCGTGTTTCTGAGTTAAAATCTATCCAAGAAGTTGAAGTTGTAGAACAAATTGCTGCTGGGGAACTTGAGACTGGAAAGGGAGCTAATCAAACATGCAATTTGCAAAGAGCTGGAGCTACTCGGTGGAGTTCAAGGTATTATTCTATCAAGAACTTGATGAAATTGTATAACTCAACTAGTTCAGTTTTGAAAAACATGATTGATAATGGACTCAATGGAAAAATACGTGGAGAGGCTTTGGGTGCTTCTAAAGCTCTAAGATCATTTGACTTTGTGTTTTGCTTATTGTTGTTGGAGAAAACTATGGGAATCACAAATGCTCTTTGTAAGTCATTGCAAGAACAGTCTCAAGAGATCATAAATGCTATGAATCTAGTTTATAGTACGAAGGGTCGTCTTAAAAAGTTGAGAGAAAATGGTTGGGTTGATTTCTTTGCTAGTGTTGTATCGTTTTGTGACGCACATACAATTGAGGCTCCAGATTTTAGTGCTCGCCATATGGAAGGTACGGGTCGTCTTTCTCAACAACAAAATTGTGTCACTATTGAGCATTATTATCGTGTTGAAATATTCAATGCCGTAATTGATTTTCAATTGATGGAACTAAATAGTAGATTCAATGAGCAAACAAGGGAACTCTTGATTCTTAGTTCTGCATTAGATCCTCGATTTGATTTTCAATCATTTGACATTGACAAAATATGTTGTTTGGCTGAGAAATTCTATCCTCATGATGTGCCTGATTTAAATGATCTAAGAGACCAATTGGAGCATTTTGAGTATCAATTCTCCGAACTTTCAGAATTTCAAGATTTATGCACCCTTTCTGAGTTATGTCAAGAATTTGTTAACACAAGGACACCATTCATGTTGATTGAGAGACTAGTCCGTCTAGTGATGACTCTTCCTGTTTCTACGGCTACAACAGAGAGAGCATTTTCAGCCATGAAGCTCATTAAGAACCGACTTCGAAGCAAGATGAGTGATGACTTTCTTGCAGATTTAATGACAGTGCATATTGAGAGAGAAATTGTTGATACTATTGATTCAAATTCGGTTATTGATGAGTTTTATGCTTTAGGCAACCGGAGAGCACAACTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

429

Amino Acids

49.12

Weight (kDa)

5.74

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 352 - 402 3.2e-06 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1071
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 4 cut(s) 902, 986, 1025, 1234
AfaI GTAC 3 cut(s) 66, 568, 691
AflII CTTAAG 1 cut(s) 1283
AhlI ACTAGT 3 cut(s) 152, 359, 1066
AluBI AGCT 7 cut(s) 95, 110, 266, 293, 299, 437, 1135
AluI AGCT 7 cut(s) 95, 110, 266, 293, 299, 437, 1135
Alw21I GWGCWC 2 cut(s) 676, 1279
Alw26I GTCTC 4 cut(s) 245, 534, 936, 1057
AlwI GGATC 1 cut(s) 839
ApeKI GCWGC 3 cut(s) 104, 107, 236
ApoI RAATTY 4 cut(s) 902, 986, 1025, 1234
AsuHPI GGTGA 1 cut(s) 20
AsuII TTCGAA 1 cut(s) 1153
Bbv12I GWGCWC 2 cut(s) 676, 1279
BbvI GCAGC 3 cut(s) 91, 119, 223
BccI CCATC 1 cut(s) 775
BceAI ACGGC 2 cut(s) 746, 1116
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BcoDI GTCTC 4 cut(s) 245, 534, 936, 1057
BcuI ACTAGT 3 cut(s) 152, 359, 1066
BfaI CTAG 7 cut(s) 92, 153, 360, 557, 621, 1067, 1076
BfmI CTRYAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 1283
BisI GCNGC 3 cut(s) 105, 108, 237
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 3 cut(s) 106, 109, 238
BmiI GGNNCC 1 cut(s) 660
BpmI CTGGAG 2 cut(s) 315, 645
Bpu1102I GCTNAGC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 1153
BpuEI CTTGAG 2 cut(s) 269, 516
BsaAI YACGTR 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 936
BsaWI WCCGGW 1 cut(s) 1269
Bse1I ACTGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 515
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 3 cut(s) 183, 888, 1002
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 3 cut(s) 91, 119, 223
BseYI CCCAGC 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 676, 1279
BsiSI CCGG 1 cut(s) 1270
BsmAI GTCTC 4 cut(s) 245, 534, 936, 1057
BsmI GAATGC 1 cut(s) 106
Bso31I GGTCTC 1 cut(s) 936
Bsp119I TTCGAA 1 cut(s) 1153
Bsp1286I GDGCHC 2 cut(s) 676, 1279
Bsp1407I TGTACA 1 cut(s) 64
Bsp143I GATC 4 cut(s) 443, 537, 844, 934
Bsp1720I GCTNAGC 1 cut(s) 180
BspCNI CTCAG 3 cut(s) 184, 889, 1003
BspHI TCATGA 1 cut(s) 913
BspLI GGNNCC 1 cut(s) 660
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 839
BspT104I TTCGAA 1 cut(s) 1153
BspTI CTTAAG 1 cut(s) 1283
BspTNI GGTCTC 1 cut(s) 936
BsrDI GCAATG 1 cut(s) 515
BsrGI TGTACA 1 cut(s) 64
BsrI ACTGG 1 cut(s) 259
BssMI GATC 4 cut(s) 443, 537, 844, 934
Bst4CI ACNGT 2 cut(s) 528, 1195
Bst6I CTCTTC 1 cut(s) 1092
BstAFI CTTAAG 1 cut(s) 1283
BstAUI TGTACA 1 cut(s) 64
BstBAI YACGTR 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 1153
BstC8I GCNNGC 2 cut(s) 27, 676
BstDEI CTNAG 7 cut(s) 180, 192, 440, 830, 897, 938, 1011
BstKTI GATC 4 cut(s) 446, 540, 847, 937
BstMAI GTCTC 4 cut(s) 245, 534, 936, 1057
BstMBI GATC 4 cut(s) 443, 537, 844, 934
BstMWI GCNNNNNNNGC 4 cut(s) 101, 425, 434, 1124
BstNSI RCATGY 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 91, 119, 223
BstX2I RGATCY 1 cut(s) 844
BstYI RGATCY 1 cut(s) 844
BtgZI GCGATG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 1200
Cac8I GCNNGC 2 cut(s) 27, 676
CciI TCATGA 1 cut(s) 913
CseI GACGC 1 cut(s) 650
Csp6I GTAC 3 cut(s) 65, 567, 690
CviAII CATG 5 cut(s) 276, 379, 914, 1051, 1129
CviQI GTAC 3 cut(s) 65, 567, 690
DdeI CTNAG 7 cut(s) 180, 192, 440, 830, 897, 938, 1011
DpnI GATC 4 cut(s) 445, 539, 846, 936
DpnII GATC 4 cut(s) 443, 537, 844, 934
DraI TTTAAA 1 cut(s) 930
DrdI GACNNNNNNGTC 1 cut(s) 1071
DseDI GACNNNNNNGTC 1 cut(s) 1071
Eam1104I CTCTTC 1 cut(s) 1092
EarI CTCTTC 1 cut(s) 1092
Eco31I GGTCTC 1 cut(s) 936
EcoT22I ATGCAT 1 cut(s) 58
FaeI CATG 5 cut(s) 279, 382, 917, 1054, 1132
FatI CATG 5 cut(s) 275, 378, 913, 1050, 1128
FauNDI CATATG 2 cut(s) 52, 681
Fnu4HI GCNGC 3 cut(s) 105, 108, 237
Fsp4HI GCNGC 3 cut(s) 105, 108, 237
FspBI CTAG 7 cut(s) 92, 153, 360, 557, 621, 1067, 1076
GluI GCNGC 3 cut(s) 105, 108, 237
GsaI CCCAGC 1 cut(s) 243
GsuI CTGGAG 2 cut(s) 315, 645
HapII CCGG 1 cut(s) 1270
HgaI GACGC 1 cut(s) 650
Hin1II CATG 5 cut(s) 279, 382, 917, 1054, 1132
HincII GTYRAC 2 cut(s) 169, 1033
HindII GTYRAC 2 cut(s) 169, 1033
HinfI GANTC 8 cut(s) 170, 393, 492, 553, 798, 826, 1084, 1229
HpaI GTTAAC 1 cut(s) 1033
HpaII CCGG 1 cut(s) 1270
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 169, 1033
Hpy188I TCNGA 4 cut(s) 193, 976, 985, 1012
Hpy188III TCNNGA 7 cut(s) 331, 533, 662, 823, 914, 992, 1022
Hpy8I GTNNAC 2 cut(s) 169, 1033
HpyAV CCTTC 2 cut(s) 565, 680
HpyCH4III ACNGT 2 cut(s) 528, 1195
HpyCH4IV ACGT 1 cut(s) 409
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 425, 434, 1124
HpyF3I CTNAG 7 cut(s) 180, 192, 440, 830, 897, 938, 1011
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 5 cut(s) 279, 382, 917, 1054, 1132
KspAI GTTAAC 1 cut(s) 1033
Kzo9I GATC 4 cut(s) 443, 537, 844, 934
LmnI GCTCC 4 cut(s) 263, 296, 664, 952
LpnPI CCDG 7 cut(s) 225, 240, 279, 675, 936, 1104, 1283
Lsp1109I GCAGC 3 cut(s) 91, 119, 223
MaeI CTAG 7 cut(s) 92, 153, 360, 557, 621, 1067, 1076
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 2 cut(s) 638, 721
MalI GATC 4 cut(s) 445, 539, 846, 936
MboI GATC 4 cut(s) 443, 537, 844, 934
MboII GAAGA 1 cut(s) 1079
MfeI CAATTG 3 cut(s) 651, 776, 947
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 2 cut(s) 676, 1279
MlyI GAGTC 3 cut(s) 164, 387, 1078
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 4 cut(s) 409, 649, 858, 921
Mph1103I ATGCAT 1 cut(s) 58
MseI TTAA 7 cut(s) 197, 582, 929, 1032, 1140, 1187, 1284
MspCI CTTAAG 1 cut(s) 1283
MspI CCGG 1 cut(s) 1270
MunI CAATTG 3 cut(s) 651, 776, 947
Mva1269I GAATGC 1 cut(s) 106
MwoI GCNNNNNNNGC 4 cut(s) 101, 425, 434, 1124
NdeI CATATG 2 cut(s) 52, 681
NdeII GATC 4 cut(s) 443, 537, 844, 934
NlaIII CATG 5 cut(s) 279, 382, 917, 1054, 1132
NlaIV GGNNCC 1 cut(s) 660
NmuCI GTSAC 2 cut(s) 638, 721
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 1 cut(s) 279
NspV TTCGAA 1 cut(s) 1153
PagI TCATGA 1 cut(s) 913
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 5 cut(s) 492, 553, 798, 826, 1229
PkrI GCNGC 3 cut(s) 106, 109, 238
PleI GAGTC 3 cut(s) 164, 387, 1078
PpsI GAGTC 3 cut(s) 164, 387, 1078
Ppu21I YACGTR 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 660
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 844
RsaI GTAC 3 cut(s) 66, 568, 691
RsaNI GTAC 3 cut(s) 65, 567, 690
SaqAI TTAA 7 cut(s) 197, 582, 929, 1032, 1140, 1187, 1284
SatI GCNGC 3 cut(s) 105, 108, 237
Sau3AI GATC 4 cut(s) 443, 537, 844, 934
SchI GAGTC 3 cut(s) 164, 387, 1078
SduI GDGCHC 2 cut(s) 676, 1279
SfcI CTRYAG 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 1153
SmiI ATTTAAAT 1 cut(s) 930
SmlI CTYRAG 3 cut(s) 248, 531, 1283
SmoI CTYRAG 3 cut(s) 248, 531, 1283
SpeI ACTAGT 3 cut(s) 152, 359, 1066
SspI AATATT 1 cut(s) 753
SspMI CTAG 7 cut(s) 92, 153, 360, 557, 621, 1067, 1076
SwaI ATTTAAAT 1 cut(s) 930
TaaI ACNGT 2 cut(s) 528, 1195
TaiI ACGT 1 cut(s) 412
TaqI TCGA 2 cut(s) 850, 1153
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 5 cut(s) 492, 553, 798, 826, 1229
Tru1I TTAA 7 cut(s) 197, 582, 929, 1032, 1140, 1187, 1284
Tru9I TTAA 7 cut(s) 197, 582, 929, 1032, 1140, 1187, 1284
TscAI CASTG 1 cut(s) 1200
TseFI GTSAC 2 cut(s) 638, 721
TseI GCWGC 3 cut(s) 104, 107, 236
Tsp45I GTSAC 2 cut(s) 638, 721
TspDTI ATGAA 4 cut(s) 356, 566, 1039, 1145
TspGWI ACGGA 1 cut(s) 1061
TspRI CASTG 1 cut(s) 1200
Vha464I CTTAAG 1 cut(s) 1283
XapI RAATTY 4 cut(s) 902, 986, 1025, 1234
XceI RCATGY 1 cut(s) 279
XspI CTAG 7 cut(s) 92, 153, 360, 557, 621, 1067, 1076
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.