Rw3G025320

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000122
Physical Location & Seq
Reverse (-)
33690512 .. 33694405
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025320.1

Sequence Viewer

Length: 2451 bp
ATGGACAAAAGAAAGATTCTTAGATTTGTTTGGCTCACCCAAGAAGGTTATGCAAACAGTCTCTTTTCCTATGTGCACGGCGTGCCAACACCATGCCGCGGACCTGACTTCTCTTCAAGTATAAATACCTCATTGGAGCCATCCCCTGCAAAAAAAACAAAGAAGAATGATAGTAATTCAGAGAAGCCTTGTCCCGAATTTAATGAAAAATATCCTTCTGATCCTGGAAATCGTCCTCCAATTTCAAGCTATCATCCTAATGTTCAAGATGAAGTACGCATATATTATCTACAAAAAGGTCCTTGTCAACCTAGAGCTCATGAGTTTCCTATCACAGAATTTGGGAGAAAGAAAAGAAGATTTGTTAAAGAGTGGTTTGATGATTTTCCTACTTGGTTAGAGTACAGCATAAAAAACGATGCTGCGTATTGTCTATGTTGTTATCTTTTTAAACAAGGAGGTGGTGATGCTTTTGTGGGTGACGGATTTAAGAACTGGAAGAAGAAGAGTATAGTATATGGTCATGTTGGAGGGCCAAACAGTACCCATAACAAGGCTCAGAGAAACTGTGAAGCATTACTAAATCAAAAACAACAGATTGAAACCATATTGTCAAATCATACAAGCCAAGATCGGATTGACTATCGGATTCGCTTAAGTGCATCAATCGGTGTTGTTAGAATTCTTTTGAAGCAAGGACTTCCATTTCGTAGGCATGATGAATTTGAAAATTCAAATAATCGAGGAAACTTTCTTGAAATTTTGGAATGGTTATGCGGTTATAATGAAGATATAAAAGCTGTCACATTGAAAAATGCTCCTGAAAATTTGAAGTTAACATCACCTGATATTCAGAAGGACATTGTAAGTGCTATTTCAGTTGAAATTGTCAATACAATTGCTAGTGAACTAGGTGATTCTTTATTTGCCATTATTGTTGATGAATCTCGAGATATGTCCTCAAAGGAGCAAATGGCCATTGTACTACGGTATGTGGATGATGGAAAGGTGATTGAGCGTTTTGTAGGTATTGAGCATGTTACGAATACCAATGCTATCACACTGAAAGAAGCTATTGATGATTTTTTAAGTAGACATGGATTAAGCATTTCAAGACTACGAGGTCAAGGATATGACGGAGCAAGTAATATGAGAGGTGAGCTGAATGGTTTGAAAACACTTATTTTGAATGAAAATAAATGTGCCTTTTATGTGCATTGTTTTGCTCATCAACTACAATTAGCTTTGGTAGCAGTGGCCAAGAATCATGATTTGGTTTCAGATTTCTTTACTTTAGTTGCTAATGTGGTGAATGTGGTTGGAGCGTCAGCTAAAATACGAGACATTCTTCGAGAAAAACATGGTGATGACATATTAGAAGCACTAGAAAACAATGAGCTTTCAAGTGGTCAAGGCTTGAATCAGGAAACTAGTGTGAAGCGAACTAGTGATACACGATGGAGCTCTCATTATGATACATTAATTAGTTTGGCTAGAATGTTCAAATTTGTGATAGCTGTACTCGAGGTTGTCAGAATGGATGGAACAAGTTCTGAACAAAAGCTAGAAGCAAGGGTTTTATTGGATTATATGCGATCATATGAATTCATTTTCTGTCTACACTTGATGAGAAAAGTGTTGGGAATCACAAATGATTTGTCAAAAGCATTGCAAAAGAAAGATCAAGATATTGTGAATACTATGAACTTGGTTACTGTATGCAAGGAACGATTGCAAGCAATGAGAAAGAGTGGTTGGGATTCTTTACTCACACAAATTGCAGTTTTTTGTGAGAAGCATTCTATTAAAGTTCTAAACATGGATGAATGCTATGCAGCTCAAGGGAAATCAAAGCGCAATGCTCAAGTGATCACAAACTTGCATCATTATCGTGTTCAGTTATTTTATACTATTATTGATAATCAGCTTCAAGAGTTGGATGATCGTTTCAATGAGAAGAATACTGAGTTGCTTCTTTGTATGTCATGTTTGAACCCGAGAAATTCATTCTCAGCTTTTGACAAAGAAAAGCTGATAAAGCTGGCCCAATATTATCCTCAGGATTTTTCTGCACATGATCTAGAAGTACTAGATGATCAACTTGAAAATTACATAGTAGACATGCACTCCAACATTGAGTTTTCTGAATTGAAGGGAATTATTGATCTTGCACAAAAGATGGTTCAGACCAAAAAAGATGTGACATATCCACTGGTGTACTTGCTTGTGACATTAGCATTGATTTTACCAGTTGCAACTGCAAGTGTAGAGAGAGTATTTTCTGCTATGAATATTGTGAAGACTCGTTTACGTAGTCGAATGGGTGACGAGTTTATGAATGATTGCTTGATTTCATATATTGAGAAAGACATTTTTACTAGTATAGATGATGAAACTATCATGCAACGATTTCAAAATATGAAATCTCGTCGAGGACAATTACCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

816

Amino Acids

93.3

Weight (kDa)

6.86

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 156 - 390 1.4e-75 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 731 - 790 7.6e-08 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
AasI GACNNNNNNGTC 1 cut(s) 1122
AccI GTMKAC 3 cut(s) 1093, 1618, 2118
AccII CGCG 1 cut(s) 99
AciI CCGC 3 cut(s) 97, 99, 777
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 2 cut(s) 975, 1257
AdeI CACNNNGTG 1 cut(s) 82
AfaI GTAC 7 cut(s) 276, 404, 544, 984, 1521, 2088, 2219
AfiI CCNNNNNNNGG 2 cut(s) 98, 553
AflII CTTAAG 1 cut(s) 655
AhlI ACTAGT 3 cut(s) 1430, 1445, 2378
AjnI CCWGG 1 cut(s) 223
AjuI GAANNNNNNNTTGG 4 cut(s) 1256, 1288, 1738, 1770
Alw21I GWGCWC 3 cut(s) 78, 319, 1466
Alw26I GTCTC 2 cut(s) 65, 1335
Alw44I GTGCAC 1 cut(s) 74
AlwI GGATC 1 cut(s) 215
Ama87I CYCGRG 3 cut(s) 948, 1523, 1996
AoxI GGCC 4 cut(s) 533, 975, 1257, 2043
ApaLI GTGCAC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 422, 1835
ArsI GACNNNNNNTTYG 4 cut(s) 690, 722, 1643, 1675
AseI ATTAAT 1 cut(s) 1481
Asp700I GAANNNNTTC 1 cut(s) 1549
AspLEI GCGC 1 cut(s) 1857
AspS9I GGNCC 4 cut(s) 101, 299, 533, 2044
AvaI CYCGRG 3 cut(s) 948, 1523, 1996
AvaII GGWCC 2 cut(s) 101, 299
AxyI CCTNAGG 1 cut(s) 2058
BaeGI GKGCMC 1 cut(s) 78
BalI TGGCCA 2 cut(s) 977, 1259
BanII GRGCYC 2 cut(s) 319, 1466
BbsI GAAGAC 1 cut(s) 2306
Bbv12I GWGCWC 3 cut(s) 78, 319, 1466
BbvI GCAGC 2 cut(s) 409, 1847
BccI CCATC 5 cut(s) 148, 995, 1452, 1535, 2173
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 1871, 1905
BciT130I CCWGG 1 cut(s) 225
BclI TGATCA 2 cut(s) 1869, 2095
BcoDI GTCTC 2 cut(s) 65, 1335
BcuI ACTAGT 3 cut(s) 1430, 1445, 2378
BfrI CTTAAG 1 cut(s) 655
BisI GCNGC 3 cut(s) 97, 423, 1836
BlsI GCNGC 3 cut(s) 98, 424, 1837
BmcAI AGTACT 1 cut(s) 2088
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 2 cut(s) 101, 299
BmeT110I CYCGRG 3 cut(s) 948, 1523, 1996
BmgT120I GGNCC 4 cut(s) 101, 299, 533, 2044
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 4 cut(s) 409, 457, 671, 1891
BpiI GAAGAC 1 cut(s) 2306
BpuEI CTTGAG 2 cut(s) 1824, 1848
BsaAI YACGTR 1 cut(s) 2312
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 2111, 2141
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 553
Bse1I ACTGG 3 cut(s) 500, 2217, 2249
Bse21I CCTNAGG 1 cut(s) 2058
Bse3DI GCAATG 3 cut(s) 1667, 1746, 1864
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 6 cut(s) 140, 253, 1003, 1546, 1828, 1945
BseLI CCNNNNNNNGG 2 cut(s) 98, 553
BseMI GCAATG 3 cut(s) 1667, 1746, 1864
BseMII CTCAG 4 cut(s) 572, 1956, 2025, 2072
BseNI ACTGG 3 cut(s) 500, 2217, 2249
BseSI GKGCMC 1 cut(s) 78
BseXI GCAGC 2 cut(s) 409, 1847
BsgI GTGCAG 1 cut(s) 2055
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 4 cut(s) 535, 977, 1259, 2045
BsiHKAI GWGCWC 3 cut(s) 78, 319, 1466
BsiHKCI CYCGRG 3 cut(s) 948, 1523, 1996
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 98, 553
BsmAI GTCTC 2 cut(s) 65, 1335
BsmFI GGGAC 1 cut(s) 177
BsmI GAATGC 2 cut(s) 1798, 1832
BsnI GGCC 4 cut(s) 535, 977, 1259, 2045
BsoBI CYCGRG 3 cut(s) 948, 1523, 1996
Bsp1286I GDGCHC 3 cut(s) 78, 319, 1466
Bsp143I GATC 9 cut(s) 220, 631, 1595, 1681, 1869, 1942, 2077, 2095, 2164
BspACI CCGC 3 cut(s) 97, 99, 777
BspANI GGCC 4 cut(s) 535, 977, 1259, 2045
BspCNI CTCAG 4 cut(s) 571, 1957, 2024, 2071
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 2 cut(s) 319, 1267
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 1 cut(s) 215
BspTI CTTAAG 1 cut(s) 655
BsrDI GCAATG 3 cut(s) 1667, 1746, 1864
BsrI ACTGG 3 cut(s) 500, 2217, 2249
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 9 cut(s) 220, 631, 1595, 1681, 1869, 1942, 2077, 2095, 2164
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 5 cut(s) 59, 542, 569, 990, 1717
Bst6I CTCTTC 2 cut(s) 118, 500
BstAFI CTTAAG 1 cut(s) 655
BstAPI GCANNNNNTGC 1 cut(s) 82
BstBAI YACGTR 1 cut(s) 2312
BstC8I GCNNGC 3 cut(s) 83, 1737, 2043
BstDEI CTNAG 5 cut(s) 20, 558, 1965, 2011, 2058
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 6 cut(s) 140, 253, 1003, 1546, 1828, 1945
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 1857
BstKTI GATC 9 cut(s) 223, 634, 1598, 1684, 1872, 1945, 2080, 2098, 2167
BstMAI GTCTC 2 cut(s) 65, 1335
BstMBI GATC 9 cut(s) 220, 631, 1595, 1681, 1869, 1942, 2077, 2095, 2164
BstMWI GCNNNNNNNGC 3 cut(s) 82, 1250, 2038
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 2 cut(s) 1040, 2125
BstSCI CCNGG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 78
BstSNI TACGTA 1 cut(s) 2312
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 409, 1847
BstV2I GAAGAC 1 cut(s) 2306
Bsu36I CCTNAGG 1 cut(s) 2058
BsuRI GGCC 4 cut(s) 535, 977, 1259, 2045
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 6 cut(s) 140, 253, 1003, 1546, 1828, 1945
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 3 cut(s) 1061, 1260, 2210
Cac8I GCNNGC 3 cut(s) 83, 1737, 2043
CciI TCATGA 2 cut(s) 319, 1267
CfoI GCGC 1 cut(s) 1857
Cfr13I GGNCC 4 cut(s) 101, 299, 533, 2044
Cfr42I CCGCGG 1 cut(s) 100
CseI GACGC 1 cut(s) 1314
Csp6I GTAC 7 cut(s) 275, 403, 543, 983, 1520, 2087, 2218
CviQI GTAC 7 cut(s) 275, 403, 543, 983, 1520, 2087, 2218
DdeI CTNAG 5 cut(s) 20, 558, 1965, 2011, 2058
DpnI GATC 9 cut(s) 222, 633, 1597, 1683, 1871, 1944, 2079, 2097, 2166
DpnII GATC 9 cut(s) 220, 631, 1595, 1681, 1869, 1942, 2077, 2095, 2164
DraI TTTAAA 1 cut(s) 451
DraIII CACNNNGTG 1 cut(s) 82
DrdI GACNNNNNNGTC 1 cut(s) 1122
DseDI GACNNNNNNGTC 1 cut(s) 1122
EaeI YGGCCR 2 cut(s) 975, 1257
Eam1104I CTCTTC 2 cut(s) 118, 500
EarI CTCTTC 2 cut(s) 118, 500
Ecl136II GAGCTC 2 cut(s) 317, 1464
Eco105I TACGTA 1 cut(s) 2312
Eco24I GRGCYC 2 cut(s) 319, 1466
Eco47I GGWCC 2 cut(s) 101, 299
Eco53kI GAGCTC 2 cut(s) 317, 1464
Eco81I CCTNAGG 1 cut(s) 2058
Eco88I CYCGRG 3 cut(s) 948, 1523, 1996
EcoICRI GAGCTC 2 cut(s) 317, 1464
EcoO109I RGGNCCY 1 cut(s) 299
EcoRI GAATTC 2 cut(s) 681, 1604
EcoRII CCWGG 1 cut(s) 223
EcoT38I GRGCYC 2 cut(s) 319, 1466
FaqI GGGAC 1 cut(s) 177
FauNDI CATATG 1 cut(s) 1600
FbaI TGATCA 2 cut(s) 1869, 2095
FblI GTMKAC 3 cut(s) 1093, 1618, 2118
Fnu4HI GCNGC 3 cut(s) 97, 423, 1836
FokI GGATG 6 cut(s) 127, 240, 1010, 1553, 1835, 1952
FriOI GRGCYC 2 cut(s) 319, 1466
Fsp4HI GCNGC 3 cut(s) 97, 423, 1836
GlaI GCGC 1 cut(s) 1856
GluI GCNGC 3 cut(s) 97, 423, 1836
HaeIII GGCC 4 cut(s) 535, 977, 1259, 2045
HgaI GACGC 1 cut(s) 1314
HhaI GCGC 1 cut(s) 1857
Hin6I GCGC 1 cut(s) 1855
HinP1I GCGC 1 cut(s) 1855
HincII GTYRAC 2 cut(s) 308, 837
HindII GTYRAC 2 cut(s) 308, 837
HinfI GANTC 9 cut(s) 16, 649, 917, 944, 1264, 1420, 1644, 1760, 2302
HpaI GTTAAC 1 cut(s) 837
Hpy166II GTNNAC 9 cut(s) 76, 308, 837, 908, 1094, 1619, 2119, 2218, 2309
Hpy8I GTNNAC 9 cut(s) 76, 308, 837, 908, 1094, 1619, 2119, 2218, 2309
Hpy99I CGWCG 1 cut(s) 2433
HpyAV CCTTC 4 cut(s) 38, 225, 850, 2146
HpyCH4III ACNGT 5 cut(s) 59, 542, 569, 990, 1717
HpyCH4IV ACGT 1 cut(s) 2311
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 1250, 2038
HpyF3I CTNAG 5 cut(s) 20, 558, 1965, 2011, 2058
HpySE526I ACGT 1 cut(s) 2311
HspAI GCGC 1 cut(s) 1855
Ksp22I TGATCA 2 cut(s) 1869, 2095
KspAI GTTAAC 1 cut(s) 837
KspI CCGCGG 1 cut(s) 100
Kzo9I GATC 9 cut(s) 220, 631, 1595, 1681, 1869, 1942, 2077, 2095, 2164
LmnI GCTCC 6 cut(s) 136, 823, 967, 1139, 1322, 1461
Lsp1109I GCAGC 2 cut(s) 409, 1847
LweI GCATC 4 cut(s) 409, 457, 671, 1891
MaeII ACGT 1 cut(s) 2311
MaeIII GTNAC 7 cut(s) 479, 802, 1039, 1711, 2200, 2227, 2324
MalI GATC 9 cut(s) 222, 633, 1597, 1683, 1871, 1944, 2079, 2097, 2166
MboI GATC 9 cut(s) 220, 631, 1595, 1681, 1869, 1942, 2077, 2095, 2164
MfeI CAATTG 1 cut(s) 897
MhlI GDGCHC 3 cut(s) 78, 319, 1466
MlsI TGGCCA 2 cut(s) 977, 1259
MluNI TGGCCA 2 cut(s) 977, 1259
MlyI GAGTC 1 cut(s) 2296
MmeI TCCRAC 4 cut(s) 508, 1300, 1917, 2154
Mox20I TGGCCA 2 cut(s) 977, 1259
MroXI GAANNNNTTC 1 cut(s) 1549
MscI TGGCCA 2 cut(s) 977, 1259
MslI CAYNNNNRTG 3 cut(s) 258, 1365, 1890
Msp20I TGGCCA 2 cut(s) 977, 1259
MspA1I CMGCKG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 655
MspR9I CCNGG 1 cut(s) 225
MunI CAATTG 1 cut(s) 897
Mva1269I GAATGC 2 cut(s) 1798, 1832
MvaI CCWGG 1 cut(s) 225
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 82, 1250, 2038
NdeI CATATG 1 cut(s) 1600
NdeII GATC 9 cut(s) 220, 631, 1595, 1681, 1869, 1942, 2077, 2095, 2164
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 5 cut(s) 479, 802, 2200, 2227, 2324
NspI RCATGY 2 cut(s) 1040, 2125
PaeR7I CTCGAG 2 cut(s) 948, 1523
PagI TCATGA 2 cut(s) 319, 1267
PctI GAATGC 2 cut(s) 1798, 1832
PdmI GAANNNNTTC 1 cut(s) 1549
PfeI GAWTC 8 cut(s) 16, 649, 917, 944, 1264, 1420, 1644, 1760
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 3 cut(s) 98, 424, 1837
PleI GAGTC 1 cut(s) 2296
PpsI GAGTC 1 cut(s) 2296
Ppu21I YACGTR 1 cut(s) 2312
PpuMI RGGWCCY 1 cut(s) 299
PshBI ATTAAT 1 cut(s) 1481
PsiI TTATAA 1 cut(s) 783
Psp124BI GAGCTC 2 cut(s) 319, 1466
Psp5II RGGWCCY 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 4 cut(s) 101, 299, 533, 2044
PspPPI RGGWCCY 1 cut(s) 299
PspXI VCTCGAGB 1 cut(s) 1523
PsrI GAACNNNNNNTAC 2 cut(s) 1435, 1467
RsaI GTAC 7 cut(s) 276, 404, 544, 984, 1521, 2088, 2219
RsaNI GTAC 7 cut(s) 275, 403, 543, 983, 1520, 2087, 2218
RseI CAYNNNNRTG 3 cut(s) 258, 1365, 1890
SacI GAGCTC 2 cut(s) 319, 1466
SacII CCGCGG 1 cut(s) 100
SatI GCNGC 3 cut(s) 97, 423, 1836
Sau3AI GATC 9 cut(s) 220, 631, 1595, 1681, 1869, 1942, 2077, 2095, 2164
Sau96I GGNCC 4 cut(s) 101, 299, 533, 2044
ScaI AGTACT 1 cut(s) 2088
SchI GAGTC 1 cut(s) 2296
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 3 cut(s) 78, 319, 1466
SfaNI GCATC 4 cut(s) 409, 457, 671, 1891
Sfr274I CTCGAG 2 cut(s) 948, 1523
Sfr303I CCGCGG 1 cut(s) 100
SgrBI CCGCGG 1 cut(s) 100
SinI GGWCC 2 cut(s) 101, 299
SlaI CTCGAG 2 cut(s) 948, 1523
SmiMI CAYNNNNRTG 3 cut(s) 258, 1365, 1890
SmlI CTYRAG 5 cut(s) 655, 948, 1523, 1839, 1863
SmoI CTYRAG 5 cut(s) 655, 948, 1523, 1839, 1863
SnaBI TACGTA 1 cut(s) 2312
SpeI ACTAGT 3 cut(s) 1430, 1445, 2378
SsiI CCGC 3 cut(s) 97, 99, 777
SspI AATATT 2 cut(s) 2051, 2293
SstI GAGCTC 2 cut(s) 319, 1466
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 5 cut(s) 59, 542, 569, 990, 1717
TaiI ACGT 1 cut(s) 2314
TaqI TCGA 6 cut(s) 742, 949, 1351, 1524, 2317, 2431
TatI WGTACW 5 cut(s) 402, 982, 1519, 2086, 2217
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 8 cut(s) 16, 649, 917, 944, 1264, 1420, 1644, 1760
TscAI CASTG 3 cut(s) 1068, 1260, 2217
TseFI GTSAC 5 cut(s) 479, 802, 2200, 2227, 2324
TseI GCWGC 2 cut(s) 422, 1835
Tsp45I GTSAC 5 cut(s) 479, 802, 2200, 2227, 2324
TspGWI ACGGA 2 cut(s) 498, 1152
TspRI CASTG 3 cut(s) 1068, 1260, 2217
Vha464I CTTAAG 1 cut(s) 655
VneI GTGCAC 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 101, 299
VspI ATTAAT 1 cut(s) 1481
XbaI TCTAGA 1 cut(s) 2080
XceI RCATGY 2 cut(s) 1040, 2125
XhoI CTCGAG 2 cut(s) 948, 1523
XmiI GTMKAC 3 cut(s) 1093, 1618, 2118
XmnI GAANNNNTTC 1 cut(s) 1549
ZrmI AGTACT 1 cut(s) 2088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.