Rw5G018740

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000122
Physical Location & Seq
Reverse (-)
24188183 .. 24190712
2530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018740.1

Sequence Viewer

Length: 1095 bp
ATGGATTTTTCAAAAGGAAGAATGCCCAATCTGATGCTAGTACTTCAGTGCCTCCACCATTGCCCAACTCCGGTACTGAAGCATCAACACCTGCTCCTGAAAATCCTCATCCTCTCAAGTCAGCTAGAATTGATTCCAGTGACAATGAAAATTATGAGATTGACACTACTTCTTTGGAACGTGACCCAGGAAAGCGTAAACAAATATGGGAGTATCCAATCAATAAACAAGATGCAGTTCGCCGAGCATACATCAAGCTTGGACCAAATCAGCCTTTGCTTAATAAATATCCTCAATCAGGACAAAACAATCATCTTCGTAGCTTTCAACCTACATGATGCGGCTTATGAGGGAATGACTTCATTTGAATTTGTTTTCATTCTGCATCTAATGAGAGAAATTATGGAAATCACTGATGAACTATGTCGGGCTTTACAATGTAAATCTCAAGATATTTTGCATGCCATGAGTCTTGTTGAATCTTCTAAAGCACTTATACAAGAATTGAGAAATGTTGGATGTGATCCTTTGCTTACTAAGGTAGATATATTCAATGTTACAATTGACTCTCAATTGCAAGAACTAAATAGCCGATTTAATGAGAATGCAGTGAGATTGAGTGTCCTCAGTTCAGCTTTAGATCCTCGTGAAATTTGTAAGTCATTTAGAATTGATGATGTTTGTGAATTAGTAGACAAATTCTATCCCGAAGACTTTGAAGATCATGAGAAGATACGCTTGAAAAGACAACTTCAACATTTTCTTAATGATGTTATTCGACTTTCAGAATTTAAAGATTTGTTGACTATTTCTGAAATGGCTCAATGGTTGGTGAAGACTCGAAGATCAATGATGTACCAACTAGTTTATAGGGTGGTTGTGTTGGTGCTCACTCTTCCAGTCTCGACAGCAACTACTGAGCGAGCATTCTCAGCTATGAAAATAGTGAAAACTAGACTTCGCAATAGAATGGATGATGATTTTCTTACCGACTCTTTGATTATGTACATTGAAAAAGAAATCGTTGAAAAATTTAGTATAGACTCCATTATTGATGACTTTCGTGATATGCAAGAGCGACGAGTTCTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

364

Amino Acids

42.52

Weight (kDa)

5.85

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 265 - 340 5.7e-11 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 693
AciI CCGC 1 cut(s) 341
AclWI GGATC 2 cut(s) 518, 635
AcsI RAATTY 5 cut(s) 368, 651, 698, 788, 1031
AcuI CTGAAG 2 cut(s) 29, 98
AfaI GTAC 4 cut(s) 42, 75, 857, 1007
AfiI CCNNNNNNNGG 2 cut(s) 70, 298
AhlI ACTAGT 1 cut(s) 862
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 5 cut(s) 124, 258, 323, 635, 935
AluI AGCT 5 cut(s) 124, 258, 323, 635, 935
Alw21I GWGCWC 1 cut(s) 891
Alw26I GTCTC 1 cut(s) 907
AlwI GGATC 2 cut(s) 518, 635
ApoI RAATTY 5 cut(s) 368, 651, 698, 788, 1031
Asp700I GAANNNNTTC 2 cut(s) 132, 358
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 844
AvaII GGWCC 1 cut(s) 262
BauI CACGAG 1 cut(s) 645
BbsI GAAGAC 2 cut(s) 717, 842
Bbv12I GWGCWC 1 cut(s) 891
BciT130I CCWGG 1 cut(s) 188
BciVI GTATCC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 907
BcuI ACTAGT 1 cut(s) 862
BfaI CTAG 4 cut(s) 38, 125, 863, 954
BfuAI ACCTGC 1 cut(s) 99
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 5 cut(s) 24, 91, 222, 328, 394
BpiI GAAGAC 2 cut(s) 717, 842
BpuEI CTTGAG 2 cut(s) 100, 432
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 298
Bse1I ACTGG 2 cut(s) 137, 899
Bse3DI GCAATG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 108, 524, 979
BseLI CCNNNNNNNGG 2 cut(s) 70, 298
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 3 cut(s) 640, 909, 945
BseNI ACTGG 2 cut(s) 137, 899
BsiHKAI GWGCWC 1 cut(s) 891
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 70, 298
BsmAI GTCTC 1 cut(s) 907
BsmI GAATGC 3 cut(s) 27, 610, 926
Bsp1286I GDGCHC 1 cut(s) 891
Bsp1407I TGTACA 1 cut(s) 1005
Bsp143I GATC 4 cut(s) 523, 640, 721, 845
BspACI CCGC 1 cut(s) 341
BspCNI CTCAG 3 cut(s) 639, 910, 944
BspHI TCATGA 1 cut(s) 724
BspMI ACCTGC 1 cut(s) 99
BspPI GGATC 2 cut(s) 518, 635
BsrDI GCAATG 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 1005
BsrI ACTGG 2 cut(s) 137, 899
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 4 cut(s) 523, 640, 721, 845
BssSI CACGAG 1 cut(s) 645
Bst2BI CACGAG 1 cut(s) 645
Bst2UI CCWGG 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 900
BstAUI TGTACA 1 cut(s) 1005
BstC8I GCNNGC 2 cut(s) 462, 924
BstDEI CTNAG 4 cut(s) 537, 626, 918, 931
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 108, 524, 979
BstKTI GATC 4 cut(s) 526, 643, 724, 848
BstMAI GTCTC 1 cut(s) 907
BstMBI GATC 4 cut(s) 523, 640, 721, 845
BstMWI GCNNNNNNNGC 1 cut(s) 932
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 186
BstV2I GAAGAC 2 cut(s) 717, 842
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuI GTATCC 1 cut(s) 224
BtsCI GGATG 3 cut(s) 108, 524, 979
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 4 cut(s) 53, 144, 411, 615
BveI ACCTGC 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 462, 924
CciI TCATGA 1 cut(s) 724
Cfr13I GGNCC 1 cut(s) 262
Csp6I GTAC 4 cut(s) 41, 74, 856, 1006
CviAII CATG 4 cut(s) 335, 461, 466, 725
CviQI GTAC 4 cut(s) 41, 74, 856, 1006
DdeI CTNAG 4 cut(s) 537, 626, 918, 931
DpnI GATC 4 cut(s) 525, 642, 723, 847
DpnII GATC 4 cut(s) 523, 640, 721, 845
DraI TTTAAA 1 cut(s) 793
Eam1104I CTCTTC 1 cut(s) 900
EarI CTCTTC 1 cut(s) 900
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 2 cut(s) 29, 98
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 4 cut(s) 338, 464, 469, 728
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FatI CATG 4 cut(s) 334, 460, 465, 724
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 3 cut(s) 95, 531, 986
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 4 cut(s) 38, 125, 863, 954
GluI GCNGC 1 cut(s) 342
HapII CCGG 1 cut(s) 71
Hin1II CATG 4 cut(s) 338, 464, 469, 728
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 7 cut(s) 133, 469, 479, 566, 838, 992, 1043
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 844
Hpy166II GTNNAC 3 cut(s) 199, 694, 804
Hpy188I TCNGA 3 cut(s) 33, 787, 814
Hpy188III TCNNGA 8 cut(s) 97, 299, 449, 647, 707, 725, 904, 1064
Hpy8I GTNNAC 3 cut(s) 199, 694, 804
Hpy99I CGWCG 1 cut(s) 1083
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 6 cut(s) 235, 385, 460, 577, 608, 1072
HpyF10VI GCNNNNNNNGC 1 cut(s) 932
HpyF3I CTNAG 4 cut(s) 537, 626, 918, 931
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 4 cut(s) 338, 464, 469, 728
Kzo9I GATC 4 cut(s) 523, 640, 721, 845
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 8 cut(s) 84, 104, 110, 150, 173, 200, 284, 912
LweI GCATC 5 cut(s) 24, 91, 222, 328, 394
MaeI CTAG 4 cut(s) 38, 125, 863, 954
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 3 cut(s) 139, 181, 556
MalI GATC 4 cut(s) 525, 642, 723, 847
MboI GATC 4 cut(s) 523, 640, 721, 845
MboII GAAGA 9 cut(s) 30, 307, 474, 722, 731, 742, 847, 855, 887
MfeI CAATTG 2 cut(s) 561, 572
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 891
MlyI GAGTC 5 cut(s) 478, 560, 832, 986, 1037
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 7 cut(s) 62, 116, 122, 302, 343, 635, 654
MroXI GAANNNNTTC 2 cut(s) 132, 358
MseI TTAA 4 cut(s) 281, 597, 765, 792
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 188
MunI CAATTG 2 cut(s) 561, 572
Mva1269I GAATGC 3 cut(s) 27, 610, 926
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 932
NdeII GATC 4 cut(s) 523, 640, 721, 845
NlaIII CATG 4 cut(s) 338, 464, 469, 728
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 2 cut(s) 139, 181
NspI RCATGY 1 cut(s) 464
PaeI GCATGC 1 cut(s) 464
PagI TCATGA 1 cut(s) 724
PaqCI CACCTGC 1 cut(s) 99
PctI GAATGC 3 cut(s) 27, 610, 926
PdmI GAANNNNTTC 2 cut(s) 132, 358
PfeI GAWTC 2 cut(s) 133, 479
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 5 cut(s) 477, 560, 832, 986, 1037
PpsI GAGTC 5 cut(s) 477, 560, 832, 986, 1037
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspPI GGNCC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 4 cut(s) 42, 75, 857, 1007
RsaNI GTAC 4 cut(s) 41, 74, 856, 1006
SaqAI TTAA 4 cut(s) 281, 597, 765, 792
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 4 cut(s) 523, 640, 721, 845
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 42
SchI GAGTC 5 cut(s) 478, 560, 832, 986, 1037
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 891
SetI ASST 9 cut(s) 93, 126, 183, 260, 325, 333, 543, 637, 937
SfaNI GCATC 5 cut(s) 24, 91, 222, 328, 394
SinI GGWCC 1 cut(s) 262
SmlI CTYRAG 2 cut(s) 115, 447
SmoI CTYRAG 2 cut(s) 115, 447
SpeI ACTAGT 1 cut(s) 862
SphI GCATGC 1 cut(s) 464
SsiI CCGC 1 cut(s) 341
SspMI CTAG 4 cut(s) 38, 125, 863, 954
StyD4I CCNGG 1 cut(s) 186
TaiI ACGT 1 cut(s) 183
TaqI TCGA 3 cut(s) 778, 841, 905
TatI WGTACW 2 cut(s) 40, 1005
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 2 cut(s) 133, 479
Tru1I TTAA 4 cut(s) 281, 597, 765, 792
Tru9I TTAA 4 cut(s) 281, 597, 765, 792
TscAI CASTG 4 cut(s) 53, 144, 418, 615
TseFI GTSAC 2 cut(s) 139, 181
Tsp45I GTSAC 2 cut(s) 139, 181
TspDTI ATGAA 5 cut(s) 161, 351, 367, 432, 953
TspRI CASTG 4 cut(s) 53, 144, 418, 615
VpaK11BI GGWCC 1 cut(s) 262
XagI CCTNNNNNAGG 1 cut(s) 296
XapI RAATTY 5 cut(s) 368, 651, 698, 788, 1031
XceI RCATGY 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 693
XmnI GAANNNNTTC 2 cut(s) 132, 358
XspI CTAG 4 cut(s) 38, 125, 863, 954
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.