FvH4_3g33391

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000122
Physical Location & Seq
Reverse (-)
28807926 .. 28808798
873 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33391.t1

Sequence Viewer

Length: 771 bp
ATGTTGTCAAATAACATTCATGTTGGGGTGGAGATAAACTTGGCTGATCTTCATTCAGATCCTAGATTACGAAAGAGTATTTCAGACTATGATTCAAACATTCGAGACCAAGTTCAAATAGAATATCTTCAGAGGGGTCCTTGTCAGCCTAAAGATCACAAATGTCTTAAGACTCAGTGTGGAGCTAAGGAACGAAGCGGAGAACAAGCAGGCGGCGGTGTTTTCACTAAAAATGGTTATCGAAATTGGAAGAAGAAAAGAAGGTTATATACTCATGTTGGAGACCTCAACAATGCTCATAACCAAGCTTTGAAGAAGTGTGAATACTTGATGAATGAAAGACAACACATTCGAAACAATATCCAGAAGAATGCTAAGCCATCCAGAACATCTTATCGAATTCGGCTCACTGCATCTGTCGATTGCATACAGTTGCTTCTAAGACAAGGCCTTGCATTCCGGGGCCATGATGAATCTAATAATTCCAGCAATCAAGGTAACTTTCTTGGGCTTTTACAATTCCTTGCTGATCATGATGAGCAAGTTAGAGTTGTGACATTGCATAATGCTCCTGAAAACCTCAAAATGACATCACTAATGATTCAAAAAGACATAGTAAATGCTGCTGCTGTTGAAACAATAAATGTCATAATTGCAGACATGGATAATGCATTGTTCTCTATTCTAGTTAATGAAGCTAGAGATGTTTCTGTAAAAGATCAAAGCATATGGCTGTTATTTTTTGTTACGTGGATAAGAAAGGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

257

Amino Acids

29.24

Weight (kDa)

9.28

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 75 - 249 1.2e-45 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 198, 213, 216
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 113
AflII CTTAAG 1 cut(s) 167
AgsI TTSAA 5 cut(s) 96, 116, 313, 605, 635
AluBI AGCT 3 cut(s) 185, 308, 698
AluI AGCT 3 cut(s) 185, 308, 698
Alw26I GTCTC 2 cut(s) 99, 276
AlwI GGATC 1 cut(s) 53
AoxI GGCC 2 cut(s) 448, 463
ApeKI GCWGC 2 cut(s) 623, 626
ApoI RAATTY 1 cut(s) 399
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 137, 463
AsuC2I CCSGG 1 cut(s) 461
AsuII TTCGAA 1 cut(s) 352
AvaII GGWCC 1 cut(s) 137
BarI GAAGNNNNNNTAC 4 cut(s) 253, 285, 308, 340
BbvI GCAGC 2 cut(s) 610, 613
BccI CCATC 1 cut(s) 388
BclI TGATCA 1 cut(s) 529
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 2 cut(s) 99, 276
BfaI CTAG 3 cut(s) 63, 686, 699
BfrI CTTAAG 1 cut(s) 167
BisI GCNGC 3 cut(s) 214, 624, 627
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 3 cut(s) 215, 625, 628
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 137, 463
BmiI GGNNCC 2 cut(s) 138, 464
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 352
BpuMI CCSGG 1 cut(s) 461
BsaAI YACGTR 1 cut(s) 750
BsaI GGTCTC 2 cut(s) 99, 276
BsaJI CCNNGG 1 cut(s) 460
Bse3DI GCAATG 1 cut(s) 557
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 610, 613
BshFI GGCC 2 cut(s) 450, 465
BsiSI CCGG 1 cut(s) 460
BsmAI GTCTC 2 cut(s) 99, 276
BsmI GAATGC 2 cut(s) 376, 455
BsnI GGCC 2 cut(s) 450, 465
Bso31I GGTCTC 2 cut(s) 99, 276
Bsp119I TTCGAA 1 cut(s) 352
Bsp143I GATC 5 cut(s) 46, 58, 154, 529, 718
Bsp1720I GCTNAGC 1 cut(s) 375
BspACI CCGC 3 cut(s) 198, 213, 216
BspANI GGCC 2 cut(s) 450, 465
BspCNI CTCAG 1 cut(s) 187
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 2 cut(s) 138, 464
BspPI GGATC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 352
BspTI CTTAAG 1 cut(s) 167
BspTNI GGTCTC 2 cut(s) 99, 276
BsrDI GCAATG 1 cut(s) 557
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 5 cut(s) 46, 58, 154, 529, 718
Bst4CI ACNGT 1 cut(s) 432
BstAFI CTTAAG 1 cut(s) 167
BstBAI YACGTR 1 cut(s) 750
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 4 cut(s) 174, 186, 375, 440
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 5 cut(s) 49, 61, 157, 532, 721
BstMAI GTCTC 2 cut(s) 99, 276
BstMBI GATC 5 cut(s) 46, 58, 154, 529, 718
BstSCI CCNGG 1 cut(s) 459
BstV1I GCAGC 2 cut(s) 610, 613
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 2 cut(s) 450, 465
BtsCI GGATG 1 cut(s) 380
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 182, 408
Cac8I GCNNGC 1 cut(s) 211
CciI TCATGA 1 cut(s) 532
Cfr13I GGNCC 2 cut(s) 137, 463
CviAII CATG 5 cut(s) 20, 275, 467, 533, 661
DdeI CTNAG 4 cut(s) 174, 186, 375, 440
DpnI GATC 5 cut(s) 48, 60, 156, 531, 720
DpnII GATC 5 cut(s) 46, 58, 154, 529, 718
Eco147I AGGCCT 1 cut(s) 450
Eco31I GGTCTC 2 cut(s) 99, 276
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 673
FaeI CATG 5 cut(s) 23, 278, 470, 536, 664
FatI CATG 5 cut(s) 19, 274, 466, 532, 660
FauNDI CATATG 1 cut(s) 728
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 3 cut(s) 214, 624, 627
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 3 cut(s) 214, 624, 627
FspBI CTAG 3 cut(s) 63, 686, 699
GluI GCNGC 3 cut(s) 214, 624, 627
HaeIII GGCC 2 cut(s) 450, 465
HapII CCGG 1 cut(s) 460
Hin1II CATG 5 cut(s) 23, 278, 470, 536, 664
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 4 cut(s) 92, 172, 473, 601
HpaII CCGG 1 cut(s) 460
Hpy188I TCNGA 3 cut(s) 58, 85, 132
Hpy188III TCNNGA 5 cut(s) 104, 364, 384, 533, 572
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4IV ACGT 1 cut(s) 749
HpyCH4V TGCA 6 cut(s) 413, 426, 455, 562, 656, 671
HpyF3I CTNAG 4 cut(s) 174, 186, 375, 440
HpySE526I ACGT 1 cut(s) 749
Hsp92II CATG 5 cut(s) 23, 278, 470, 536, 664
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 5 cut(s) 46, 58, 154, 529, 718
LmnI GCTCC 2 cut(s) 182, 574
LpnPI CCDG 6 cut(s) 195, 377, 397, 473, 499, 585
Lsp1109I GCAGC 2 cut(s) 610, 613
LweI GCATC 1 cut(s) 422
MaeI CTAG 3 cut(s) 63, 686, 699
MaeII ACGT 1 cut(s) 749
MaeIII GTNAC 3 cut(s) 497, 553, 745
MalI GATC 5 cut(s) 48, 60, 156, 531, 720
MboI GATC 5 cut(s) 46, 58, 154, 529, 718
MboII GAAGA 6 cut(s) 41, 119, 262, 265, 325, 379
MflI RGATCY 1 cut(s) 58
MluCI AATT 5 cut(s) 244, 399, 481, 518, 651
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 3 cut(s) 126, 296, 590
Mph1103I ATGCAT 1 cut(s) 673
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 2 cut(s) 168, 690
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 1 cut(s) 461
Mva1269I GAATGC 2 cut(s) 376, 455
NciI CCSGG 1 cut(s) 461
NdeI CATATG 1 cut(s) 728
NdeII GATC 5 cut(s) 46, 58, 154, 529, 718
NlaIII CATG 5 cut(s) 23, 278, 470, 536, 664
NlaIV GGNNCC 2 cut(s) 138, 464
NmuCI GTSAC 1 cut(s) 553
NsiI ATGCAT 1 cut(s) 673
NspV TTCGAA 1 cut(s) 352
PagI TCATGA 1 cut(s) 532
PceI AGGCCT 1 cut(s) 450
PctI GAATGC 2 cut(s) 376, 455
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 92, 473, 601
PkrI GCNGC 3 cut(s) 215, 625, 628
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 750
PpuMI RGGWCCY 1 cut(s) 137
Psp5II RGGWCCY 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 138, 464
PspPI GGNCC 2 cut(s) 137, 463
PspPPI RGGWCCY 1 cut(s) 137
PsuI RGATCY 1 cut(s) 58
SaqAI TTAA 2 cut(s) 168, 690
SatI GCNGC 3 cut(s) 214, 624, 627
Sau3AI GATC 5 cut(s) 46, 58, 154, 529, 718
Sau96I GGNCC 2 cut(s) 137, 463
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 461
SetI ASST 9 cut(s) 187, 266, 288, 310, 499, 582, 700, 752, 765
SfaNI GCATC 1 cut(s) 422
SfuI TTCGAA 1 cut(s) 352
SinI GGWCC 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 5 cut(s) 244, 399, 481, 518, 651
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 3 cut(s) 198, 213, 216
SspMI CTAG 3 cut(s) 63, 686, 699
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 432
TaiI ACGT 1 cut(s) 752
TaqI TCGA 5 cut(s) 103, 241, 352, 397, 420
TasI AATT 5 cut(s) 244, 399, 481, 518, 651
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 3 cut(s) 92, 473, 601
Tru1I TTAA 2 cut(s) 168, 690
Tru9I TTAA 2 cut(s) 168, 690
TscAI CASTG 2 cut(s) 182, 415
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 2 cut(s) 623, 626
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 6 cut(s) 8, 41, 347, 351, 486, 708
TspRI CASTG 2 cut(s) 182, 415
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 3 cut(s) 63, 686, 699
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.