Rmu_sc0009104.1_g000013

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009104.1
OG0000122
Physical Location & Seq
Reverse (-)
35853 .. 36890
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009104.1_g000013.1.cds

Sequence Viewer

Length: 969 bp
atgtctcatgagccaaaaccgaagcgatcaaaattcattgacacagggtttaaaagaacaaatgttgagtcttcaagttcaaatgtggtttctaaaccttccatatcctctccaaatattgatgttgaacctcaaccttccattcctgaaccacaaaataatatcaacgctcttgaacgtgatcctggattacgttgtgccatatggaaatatccagtgaatgagcgtgataggagtcaacaacgtagatttcagttttcttggttcaagtcgtatccatggcttgaatattcaattcctcttgatagggtatattgcttcccttgttttctatttgacactgaagtttctcaccatccaacattcaccattgatgggtttaaggcttggaagagggtttctggtagtgataatgtgttgatgaagcacgtaggaggccttaattctccccatcacgctgcaatgcaaaaatgggatttaataagaaatcctaccaaacaaattgaaacggtttttcagtcaaaatctgtgaaagatatagaggacaatcgattgaggcttaaggcttcaatagaaagtgtaagattgctagctaatcaaggagttgcttttagaggccatgatgaaactgaagactcattgaatgcgggatattttagagaggtcataaaatccttttcaagaatgagtgtagaggttgagagagttgttttgggaaatgctcccggaaatgccaagtacattagtccatcaattcaaaagcaacttctaaatattctgggtaataaagtgaggaacaagatacgtgaagaagtaggagattccaaatattgtattcttgttgatgaagcagtagatacatctagtaaggaacaaatggccattattttgaggtttgttgattgtcaaggtattattctagaacgattttttaagattgtgagtgttttcagctatgaacatcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

322

Amino Acids

36.99

Weight (kDa)

8.96

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 647
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 2 cut(s) 363, 651
AfaI GTAC 1 cut(s) 740
AfiI CCNNNNNNNGG 1 cut(s) 375
AflII CTTAAG 1 cut(s) 560
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 2 cut(s) 593, 954
AluI AGCT 2 cut(s) 593, 954
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 176
AoxI GGCC 3 cut(s) 436, 616, 879
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 2 cut(s) 344, 358
AsuNHI GCTAGC 1 cut(s) 589
BalI TGGCCA 1 cut(s) 881
BbsI GAAGAC 2 cut(s) 63, 639
BbvI GCAGC 1 cut(s) 445
BccI CCATC 4 cut(s) 363, 368, 459, 757
BciT130I CCWGG 1 cut(s) 186
BciVI GTATCC 1 cut(s) 285
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 590, 864, 920
BfrI CTTAAG 1 cut(s) 560
BfuI GTATCC 1 cut(s) 285
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
Bme1390I CCNGG 2 cut(s) 186, 726
BmrFI CCNGG 2 cut(s) 186, 726
BmtI GCTAGC 1 cut(s) 593
BpiI GAAGAC 2 cut(s) 63, 639
BpuMI CCSGG 1 cut(s) 726
Bsa29I ATCGAT 1 cut(s) 550
BsaAI YACGTR 2 cut(s) 430, 806
BsaJI CCNNGG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 468
BseBI CCWGG 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 550
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMI GCAATG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 445
BshFI GGCC 3 cut(s) 438, 618, 881
BshVI ATCGAT 1 cut(s) 550
BsiSI CCGG 1 cut(s) 726
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 3 cut(s) 438, 618, 881
Bsp143I GATC 2 cut(s) 26, 181
Bsp19I CCATGG 1 cut(s) 278
BspACI CCGC 1 cut(s) 647
BspANI GGCC 3 cut(s) 438, 618, 881
BspDI ATCGAT 1 cut(s) 550
BspHI TCATGA 1 cut(s) 7
BspOI GCTAGC 1 cut(s) 593
BspPI GGATC 1 cut(s) 176
BspTI CTTAAG 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 468
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 2 cut(s) 26, 181
BssT1I CCWWGG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 1 cut(s) 386
BstAFI CTTAAG 1 cut(s) 560
BstBAI YACGTR 2 cut(s) 430, 806
BstC8I GCNNGC 1 cut(s) 591
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 2 cut(s) 29, 184
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 26, 181
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 184, 724
BstV1I GCAGC 1 cut(s) 445
BstV2I GAAGAC 2 cut(s) 63, 639
Bsu15I ATCGAT 1 cut(s) 550
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 3 cut(s) 438, 618, 881
BsuTUI ATCGAT 1 cut(s) 550
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 222, 339
Cac8I GCNNGC 1 cut(s) 591
CciI TCATGA 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 550
Csp6I GTAC 1 cut(s) 739
CviAII CATG 3 cut(s) 8, 279, 620
CviQI GTAC 1 cut(s) 739
DpnI GATC 2 cut(s) 28, 183
DpnII GATC 2 cut(s) 26, 181
DraI TTTAAA 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 438
Eco57I CTGAAG 2 cut(s) 363, 651
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 3 cut(s) 11, 282, 623
FatI CATG 3 cut(s) 7, 278, 619
FauI CCCGC 1 cut(s) 640
FauNDI CATATG 1 cut(s) 203
Fnu4HI GCNGC 1 cut(s) 459
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 459
FspBI CTAG 3 cut(s) 590, 864, 920
GluI GCNGC 1 cut(s) 459
HaeIII GGCC 3 cut(s) 438, 618, 881
HapII CCGG 1 cut(s) 726
Hin1II CATG 3 cut(s) 11, 282, 623
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HinfI GANTC 4 cut(s) 68, 235, 635, 821
HpaII CCGG 1 cut(s) 726
HphI GGTGA 2 cut(s) 344, 358
Hpy166II GTNNAC 1 cut(s) 239
Hpy188III TCNNGA 6 cut(s) 8, 146, 173, 302, 681, 920
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 108, 147
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4IV ACGT 5 cut(s) 178, 193, 244, 429, 805
HpyCH4V TGCA 2 cut(s) 461, 466
HpySE526I ACGT 5 cut(s) 178, 193, 244, 429, 805
Hsp92II CATG 3 cut(s) 11, 282, 623
Kzo9I GATC 2 cut(s) 26, 181
LmnI GCTCC 1 cut(s) 727
LpnPI CCDG 8 cut(s) 30, 159, 171, 198, 228, 387, 739, 764
Lsp1109I GCAGC 1 cut(s) 445
MaeI CTAG 3 cut(s) 590, 864, 920
MaeII ACGT 5 cut(s) 178, 193, 244, 429, 805
MalI GATC 2 cut(s) 28, 183
MboI GATC 2 cut(s) 26, 181
MboII GAAGA 4 cut(s) 63, 403, 644, 821
MlsI TGGCCA 1 cut(s) 881
MluCI AATT 5 cut(s) 32, 294, 442, 501, 753
MluNI TGGCCA 1 cut(s) 881
MlyI GAGTC 3 cut(s) 77, 244, 629
MmeI TCCRAC 1 cut(s) 383
Mox20I TGGCCA 1 cut(s) 881
MscI TGGCCA 1 cut(s) 881
MseI TTAA 7 cut(s) 51, 381, 441, 479, 561, 933, 967
Msp20I TGGCCA 1 cut(s) 881
MspCI CTTAAG 1 cut(s) 560
MspI CCGG 1 cut(s) 726
MspR9I CCNGG 2 cut(s) 186, 726
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 1 cut(s) 186
NciI CCSGG 1 cut(s) 726
NcoI CCATGG 1 cut(s) 278
NdeI CATATG 1 cut(s) 203
NdeII GATC 2 cut(s) 26, 181
NheI GCTAGC 1 cut(s) 589
NlaIII CATG 3 cut(s) 11, 282, 623
PagI TCATGA 1 cut(s) 7
PceI AGGCCT 1 cut(s) 438
PctI GAATGC 1 cut(s) 649
PfeI GAWTC 1 cut(s) 821
PfoI TCCNGGA 2 cut(s) 184, 724
PkrI GCNGC 1 cut(s) 460
PleI GAGTC 3 cut(s) 76, 243, 629
PpsI GAGTC 3 cut(s) 76, 243, 629
Ppu21I YACGTR 2 cut(s) 430, 806
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
SaqAI TTAA 7 cut(s) 51, 381, 441, 479, 561, 933, 967
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 2 cut(s) 26, 181
SchI GAGTC 3 cut(s) 77, 244, 629
ScrFI CCNGG 2 cut(s) 186, 726
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 5 cut(s) 32, 294, 442, 501, 753
SseBI AGGCCT 1 cut(s) 438
SsiI CCGC 1 cut(s) 647
SspI AATATT 4 cut(s) 118, 290, 775, 830
SspMI CTAG 3 cut(s) 590, 864, 920
StuI AGGCCT 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 184, 724
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 511
TaiI ACGT 5 cut(s) 181, 196, 247, 432, 808
TaqI TCGA 1 cut(s) 550
TasI AATT 5 cut(s) 32, 294, 442, 501, 753
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 1 cut(s) 821
Tru1I TTAA 7 cut(s) 51, 381, 441, 479, 561, 933, 967
Tru9I TTAA 7 cut(s) 51, 381, 441, 479, 561, 933, 967
TscAI CASTG 2 cut(s) 222, 346
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 4 cut(s) 25, 437, 639, 861
TspRI CASTG 2 cut(s) 222, 346
Vha464I CTTAAG 1 cut(s) 560
XapI RAATTY 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 919
XspI CTAG 3 cut(s) 590, 864, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.