Rmu_sc0002052.1_g000009

ZnF_TTF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002052.1
OG0000122
Physical Location & Seq
Reverse (-)
28708 .. 29850
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002052.1_g000009.1.cds

Sequence Viewer

Length: 1143 bp
atgaaaaagtcatccacacagaagacacttgataagtggtttactaaaagaaaaacgcctgaaaactctgaatctagtgttaccttaccacaatctgatgttgagactcaagaggctgaaaatcgtgctaaattttcaagaactgaaatcaatgaaattcagattgattcactagaacgtgatccgggaaaacgtccgcaaatctgggaatatcatcctaaccaacaagatgaagtccgacgtgcttatattaaacttggtccataccagcctttactttcatcatatccaccaaaaggaaagtgcaaccgtagcttccaatcttcgtggtttgcactattttcttcatggttagaatatcctccgactgaaaataaagctttttgtctaccttgttttctttttaataagcccaacggccattctggccacaaagctttcactattgagggatttcaaagttggaagaaagtaagagatggaaagggttgtgcttttttgagtcatatgggtaaagattctgactcttttcataagaatgctgtaagagcctgtgacgacttgatgaagcaaccccagcatatacagaatgttgttgaaaattatacttcaaaacaaattgcagacaaccgtctacgagtcaaaacttcaattgaagcagttcgatggcttgcatttcaaggttgtgcttttagaggtcatgatgaaagcgttgattcaatcaatcctggtaatttcgtgaaactcttagaattgttggcttcatataatgaaaaagttgctgaagttatactacaaaatgctccaagaaatgcttcttacacatcgccgaagattcaaaaacaaatgttacaggcattttcagtaagagtaaagaaggccattcgggaagaaattaatgattcaaaattttgcataattgttgatgaagctcgtgatgagtcaaagaaagagcaaatggctatagtattgagatttgttgacaaagatggttttattcgggagcgtttttttagacttgttcatgtctcagacaccaaggcatcaacattgcaaaagggaatatattcagtgttatcaaatcacaatttagatatccaaaacattcgaggccaaggatactatggtgcaagtaatatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

380

Amino Acids

43.71

Weight (kDa)

9.23

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 388, 634
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 2 cut(s) 418, 427
AcsI RAATTY 3 cut(s) 131, 156, 908
AcuI CTGAAG 1 cut(s) 804
AfiI CCNNNNNNNGG 1 cut(s) 296
AjiI CACGTC 1 cut(s) 242
AjnI CCWGG 1 cut(s) 727
AjuI GAANNNNNNNTTGG 2 cut(s) 799, 831
AluBI AGCT 4 cut(s) 315, 380, 437, 932
AluI AGCT 4 cut(s) 315, 380, 437, 932
Alw26I GTCTC 2 cut(s) 98, 1033
AlwI GGATC 1 cut(s) 176
AoxI GGCC 4 cut(s) 418, 427, 879, 1111
ApoI RAATTY 3 cut(s) 131, 156, 908
AseI ATTAAT 1 cut(s) 897
Asp700I GAANNNNTTC 3 cut(s) 660, 814, 1066
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 260
BaeI ACNNNNGTAYC 1 cut(s) 1111
BalI TGGCCA 1 cut(s) 429
BarI GAAGNNNNNNTAC 2 cut(s) 777, 809
BauI CACGAG 1 cut(s) 933
BbsI GAAGAC 1 cut(s) 29
BccI CCATC 3 cut(s) 473, 660, 983
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 1 cut(s) 729
BciVI GTATCC 1 cut(s) 1112
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 98, 1033
BfaI CTAG 2 cut(s) 75, 173
BfmI CTRYAG 1 cut(s) 963
BfuI GTATCC 1 cut(s) 1112
BglI GCCNNNNNGGC 1 cut(s) 426
Bme1390I CCNGG 2 cut(s) 186, 729
Bme18I GGWCC 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 2 cut(s) 186, 729
BmsI GCATC 1 cut(s) 1052
BoxI GACNNNNGTC 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 1038, 1114
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 1049
BseBI CCWGG 1 cut(s) 729
BseDI CCNNGG 2 cut(s) 1038, 1114
BseGI GGATG 2 cut(s) 11, 214
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 1049
BseMII CTCAG 1 cut(s) 1044
BseYI CCCAGC 1 cut(s) 576
BshFI GGCC 4 cut(s) 420, 429, 881, 1113
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 2 cut(s) 98, 1033
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 4 cut(s) 420, 429, 881, 1113
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 197
BspANI GGCC 4 cut(s) 420, 429, 881, 1113
BspCNI CTCAG 1 cut(s) 1043
BspHI TCATGA 1 cut(s) 700
BspPI GGATC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 1049
BssECI CCNNGG 2 cut(s) 1038, 1114
BssMI GATC 1 cut(s) 181
BssSI CACGAG 1 cut(s) 933
BssT1I CCWWGG 2 cut(s) 1038, 1114
Bst2BI CACGAG 1 cut(s) 933
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 2 cut(s) 311, 632
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 2 cut(s) 748, 1030
BstF5I GGATG 2 cut(s) 11, 214
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 2 cut(s) 98, 1033
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 4 cut(s) 312, 426, 548, 577
BstNI CCWGG 1 cut(s) 729
BstPAI GACNNNNGTC 1 cut(s) 630
BstSCI CCNGG 2 cut(s) 184, 727
BstSFI CTRYAG 1 cut(s) 963
BstV2I GAAGAC 1 cut(s) 29
BsuI GTATCC 1 cut(s) 1112
BsuRI GGCC 4 cut(s) 420, 429, 881, 1113
BtgZI GCGATG 1 cut(s) 810
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 2 cut(s) 11, 214
BtsIMutI CAGTG 1 cut(s) 1077
Cac8I GCNNGC 1 cut(s) 672
CciI TCATGA 1 cut(s) 700
Cfr13I GGNCC 1 cut(s) 260
CspCI CAANNNNNGTGG 2 cut(s) 308, 343
CviAII CATG 3 cut(s) 348, 701, 1025
DdeI CTNAG 2 cut(s) 748, 1030
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 2 cut(s) 418, 427
Eco130I CCWWGG 2 cut(s) 1038, 1114
Eco32I GATATC 1 cut(s) 1096
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 804
EcoRII CCWGG 1 cut(s) 727
EcoRV GATATC 1 cut(s) 1096
EcoT14I CCWWGG 2 cut(s) 1038, 1114
ErhI CCWWGG 2 cut(s) 1038, 1114
FaeI CATG 3 cut(s) 351, 704, 1028
FalI AAGNNNNNCTT 2 cut(s) 799, 831
FatI CATG 3 cut(s) 347, 700, 1024
FauNDI CATATG 1 cut(s) 507
FblI GTMKAC 2 cut(s) 388, 634
FokI GGATG 1 cut(s) 201
FspBI CTAG 2 cut(s) 75, 173
GsaI CCCAGC 1 cut(s) 580
HaeIII GGCC 4 cut(s) 420, 429, 881, 1113
HapII CCGG 1 cut(s) 185
Hin1II CATG 3 cut(s) 351, 704, 1028
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HindIII AAGCTT 2 cut(s) 378, 435
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 4 cut(s) 42, 389, 635, 982
Hpy188I TCNGA 7 cut(s) 70, 97, 162, 239, 366, 523, 1033
Hpy188III TCNNGA 7 cut(s) 110, 138, 701, 739, 887, 935, 1001
Hpy8I GTNNAC 4 cut(s) 42, 389, 635, 982
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 871
HpyCH4III ACNGT 2 cut(s) 311, 632
HpyCH4IV ACGT 3 cut(s) 178, 193, 241
HpyCH4V TGCA 7 cut(s) 306, 335, 623, 674, 915, 1054, 1130
HpyF10VI GCNNNNNNNGC 4 cut(s) 312, 426, 548, 577
HpyF3I CTNAG 2 cut(s) 748, 1030
HpySE526I ACGT 3 cut(s) 178, 193, 241
Hsp92II CATG 3 cut(s) 351, 704, 1028
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 2 cut(s) 808, 1003
LweI GCATC 1 cut(s) 1052
MaeI CTAG 2 cut(s) 75, 173
MaeII ACGT 3 cut(s) 178, 193, 241
MaeIII GTNAC 3 cut(s) 79, 554, 849
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 6 cut(s) 34, 315, 336, 478, 844, 902
MfeI CAATTG 1 cut(s) 651
MlsI TGGCCA 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 5 cut(s) 100, 511, 518, 648, 950
MmeI TCCRAC 3 cut(s) 262, 389, 443
MnlI CCTC 5 cut(s) 106, 372, 442, 689, 1103
Mox20I TGGCCA 1 cut(s) 429
MroXI GAANNNNTTC 3 cut(s) 660, 814, 1066
MscI TGGCCA 1 cut(s) 429
MseI TTAA 3 cut(s) 252, 405, 897
MslI CAYNNNNRTG 1 cut(s) 537
Msp20I TGGCCA 1 cut(s) 429
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 186, 729
MunI CAATTG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 1 cut(s) 729
MwoI GCNNNNNNNGC 4 cut(s) 312, 426, 548, 577
NciI CCSGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 507
NdeII GATC 1 cut(s) 181
NlaIII CATG 3 cut(s) 351, 704, 1028
NmuCI GTSAC 1 cut(s) 554
PagI TCATGA 1 cut(s) 700
PctI GAATGC 1 cut(s) 544
PdmI GAANNNNTTC 3 cut(s) 660, 814, 1066
PfeI GAWTC 6 cut(s) 71, 167, 518, 716, 835, 902
PfoI TCCNGGA 1 cut(s) 184
PleI GAGTC 5 cut(s) 100, 510, 518, 647, 949
PpsI GAGTC 5 cut(s) 100, 510, 518, 647, 949
PshAI GACNNNNGTC 1 cut(s) 630
PshBI ATTAAT 1 cut(s) 897
Psp6I CCWGG 1 cut(s) 727
PspFI CCCAGC 1 cut(s) 576
PspGI CCWGG 1 cut(s) 727
PspPI GGNCC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 537
SaqAI TTAA 3 cut(s) 252, 405, 897
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 5 cut(s) 100, 511, 518, 648, 950
ScrFI CCNGG 2 cut(s) 186, 729
SfaNI GCATC 1 cut(s) 1052
SfcI CTRYAG 1 cut(s) 963
SfiI GGCCNNNNNGGCC 1 cut(s) 426
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
SsiI CCGC 1 cut(s) 197
SspMI CTAG 2 cut(s) 75, 173
StyD4I CCNGG 2 cut(s) 184, 727
StyI CCWWGG 2 cut(s) 1038, 1114
TaaI ACNGT 2 cut(s) 311, 632
TaiI ACGT 3 cut(s) 181, 196, 244
TaqI TCGA 2 cut(s) 664, 1108
TfiI GAWTC 6 cut(s) 71, 167, 518, 716, 835, 902
Tru1I TTAA 3 cut(s) 252, 405, 897
Tru9I TTAA 3 cut(s) 252, 405, 897
TscAI CASTG 1 cut(s) 1077
TseFI GTSAC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 554
TspRI CASTG 1 cut(s) 1077
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 1 cut(s) 897
XapI RAATTY 3 cut(s) 131, 156, 908
XcmI CCANNNNNNNNNTGG 1 cut(s) 1121
XmiI GTMKAC 2 cut(s) 388, 634
XmnI GAANNNNTTC 3 cut(s) 660, 814, 1066
XspI CTAG 2 cut(s) 75, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.