FvH4_3g10612

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000122
Physical Location & Seq
Reverse (-)
6330663 .. 6332314
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10612.t1

Sequence Viewer

Length: 1314 bp
ATGGACAAAGCATATTGCTTCCCTTGCTTCTTATTTGATAGATATCCATCCCACCATCCAGCATTCACTGAGTATGGGTTTCAAGGTTGGAAGAATATTATGTCAAAGCAATCTGGCATTCTTAAACACATGGGAGGTATAAATTCACCACATAATGCTGCCATGCACAAGTGGGAGACACTAAGAAACCCAACTAAGCATATTGAGAGAGTCATTAGCACACATGCATCCCAAGAAGCAGCAAATCACCGACTTCGGCTTATTGCTACTATAGAAGGTGTAAGGTTGTTAGCCAAACAAGGATGTGCTTTTAGAGGGAATGATGAGTCGGCAGATTCAACTAATCGTGGAAACTTCGATGCAATTTTGAGTTCATTTGGAAGAATGAATCTAGAAGTTCAAAGGGTGTTTGATAATGCTCCTGGAAATGCCAAGTATACTTCTCCATTAATACATAAACAAATTGCAAATATATTGGGCAACAAAGTTAGAGAGAAGATTCGAGATGAAGTTGGATCAGCCAAATTTTGTATCTTGGTTGATGAAGCAGTTGATGCATCTAGTAAGGAGCAAATGGCTATCATACTTCGATTTGTTGATTGTCATGGGTTTATTAGAGAAAGGTTTTTCAAAATTCTTAGTGTTGCAGACACTTGTTCTCAGACTTTATATTCTGAGATATCTAAAGTCCTTACTCACAATGATCTTCAAATAGAAAATATGCGTGGTCAAGGATATGATGGTGCTAGTAACATGCGGGGTGAATTTAATGGTTTACAAGCTTTGTTTCGTGAAGAGTGTCCGTATGCATATTATGTGCATTGCTTTGCTCATCGCTTGCGATTAGCTTTAAATGTCGCTGCCAAAGGGGTGGATGATATTTATACATTTTTTGGTACATTGAGCTTCGTTGTGAATTTTGTAGATTCTTTTGCAAAGAGACATTCAGCTTTGAAAGCTACCAGAGAAGAAGAGATTGCAGAATTAGTGGCTGCTGGCAAACTTCAAACAGGTACAGGGGCTAATCAGGCTTGCACTTTGCAACGAGCAGGGGCAACTCGTTGGGGTTCACATTTTCGCTCTATAACAAGTTTGATTAATCTATTTGGAGCTACCCGAACAACTCTTGCAGAACTGGCTGCAAATGGACCAAAAAAGATACAAGCAGAAGCAAAGAATGTGGATGATTCATTAGAGCTCCTTGTTCTTAGTGCTACATTGGATCCTCGTGATAATTTTGTTGCATTCAAATCAGAAGATGTTTGCAATCTTGCTTTGAAGTTTTATCCTGAGAATATGATTTGTCAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

438

Amino Acids

48.82

Weight (kDa)

8.4

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 36 - 258 4.3e-49 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 437
AciI CCGC 1 cut(s) 757
AclWI GGATC 3 cut(s) 523, 1217, 1230
AcsI RAATTY 5 cut(s) 142, 524, 633, 764, 916
AfaI GTAC 2 cut(s) 898, 1015
AgsI TTSAA 9 cut(s) 83, 339, 401, 631, 710, 955, 1007, 1249, 1279
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 7 cut(s) 782, 848, 906, 950, 959, 1112, 1198
AluI AGCT 7 cut(s) 782, 848, 906, 950, 959, 1112, 1198
Alw21I GWGCWC 1 cut(s) 1200
Alw26I GTCTC 2 cut(s) 170, 934
AlwI GGATC 3 cut(s) 523, 1217, 1230
ApeKI GCWGC 5 cut(s) 158, 239, 860, 992, 1139
ApoI RAATTY 5 cut(s) 142, 524, 633, 764, 916
AseI ATTAAT 2 cut(s) 449, 1098
AspS9I GGNCC 1 cut(s) 1148
AsuHPI GGTGA 3 cut(s) 138, 239, 773
AvaII GGWCC 1 cut(s) 1148
BamHI GGATCC 1 cut(s) 1222
BanII GRGCYC 1 cut(s) 1200
BauI CACGAG 1 cut(s) 1227
Bbv12I GWGCWC 1 cut(s) 1200
BbvI GCAGC 5 cut(s) 145, 251, 847, 979, 1126
BccI CCATC 3 cut(s) 55, 63, 734
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 170, 934
BfaI CTAG 4 cut(s) 392, 561, 747, 1312
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 5 cut(s) 159, 240, 861, 993, 1140
BlsI GCNGC 5 cut(s) 160, 241, 862, 994, 1141
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 1 cut(s) 1148
BmgT120I GGNCC 1 cut(s) 1148
BmiI GGNNCC 1 cut(s) 1224
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 4 cut(s) 236, 349, 544, 566
BsaBI GATNNNNATC 2 cut(s) 42, 46
Bse1I ACTGG 1 cut(s) 1140
Bse3DI GCAATG 1 cut(s) 820
Bse8I GATNNNNATC 2 cut(s) 42, 46
BseBI CCWGG 1 cut(s) 423
BseGI GGATG 6 cut(s) 47, 55, 227, 308, 880, 1189
BseJI GATNNNNATC 2 cut(s) 42, 46
BseMI GCAATG 1 cut(s) 820
BseMII CTCAG 4 cut(s) 60, 666, 674, 1281
BseNI ACTGG 1 cut(s) 1140
BseXI GCAGC 5 cut(s) 145, 251, 847, 979, 1126
BsiHKAI GWGCWC 1 cut(s) 1200
BsmAI GTCTC 2 cut(s) 170, 934
BsmI GAATGC 3 cut(s) 62, 117, 1244
Bsp1286I GDGCHC 1 cut(s) 1200
Bsp143I GATC 3 cut(s) 515, 703, 1222
BspACI CCGC 1 cut(s) 757
BspCNI CTCAG 4 cut(s) 61, 667, 673, 1282
BspLI GGNNCC 1 cut(s) 1224
BspPI GGATC 3 cut(s) 523, 1217, 1230
BsrDI GCAATG 1 cut(s) 820
BsrI ACTGG 1 cut(s) 1140
BssMI GATC 3 cut(s) 515, 703, 1222
BssNAI GTATAC 1 cut(s) 438
BssSI CACGAG 1 cut(s) 1227
Bst1107I GTATAC 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 1227
Bst2UI CCWGG 1 cut(s) 423
Bst6I CTCTTC 2 cut(s) 789, 966
BstAPI GCANNNNNTGC 1 cut(s) 554
BstC8I GCNNGC 3 cut(s) 839, 997, 1033
BstDEI CTNAG 8 cut(s) 69, 182, 195, 638, 660, 675, 1208, 1290
BstF5I GGATG 6 cut(s) 47, 55, 227, 308, 880, 1189
BstKTI GATC 3 cut(s) 518, 706, 1225
BstMAI GTCTC 2 cut(s) 170, 934
BstMBI GATC 3 cut(s) 515, 703, 1222
BstMWI GCNNNNNNNGC 5 cut(s) 24, 554, 956, 1028, 1136
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 2 cut(s) 227, 757
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 5 cut(s) 145, 251, 847, 979, 1126
BstX2I RGATCY 1 cut(s) 1222
BstXI CCANNNNNNTGG 1 cut(s) 871
BstYI RGATCY 1 cut(s) 1222
BstZ17I GTATAC 1 cut(s) 438
BtgZI GCGATG 1 cut(s) 818
BtsCI GGATG 6 cut(s) 47, 55, 227, 308, 880, 1189
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 3 cut(s) 839, 997, 1033
Cfr13I GGNCC 1 cut(s) 1148
Csp6I GTAC 2 cut(s) 897, 1014
CspCI CAANNNNNGTGG 2 cut(s) 1161, 1196
CviAII CATG 5 cut(s) 130, 163, 224, 605, 754
CviQI GTAC 2 cut(s) 897, 1014
DdeI CTNAG 8 cut(s) 69, 182, 195, 638, 660, 675, 1208, 1290
DpnI GATC 3 cut(s) 517, 705, 1224
DpnII GATC 3 cut(s) 515, 703, 1222
DraI TTTAAA 1 cut(s) 852
Eam1104I CTCTTC 2 cut(s) 789, 966
EarI CTCTTC 2 cut(s) 789, 966
Ecl136II GAGCTC 1 cut(s) 1198
Eco24I GRGCYC 1 cut(s) 1200
Eco32I GATATC 2 cut(s) 44, 681
Eco47I GGWCC 1 cut(s) 1148
Eco53kI GAGCTC 1 cut(s) 1198
EcoICRI GAGCTC 1 cut(s) 1198
EcoRII CCWGG 1 cut(s) 421
EcoRV GATATC 2 cut(s) 44, 681
EcoT22I ATGCAT 3 cut(s) 229, 559, 811
EcoT38I GRGCYC 1 cut(s) 1200
FaeI CATG 5 cut(s) 133, 166, 227, 608, 757
FatI CATG 5 cut(s) 129, 162, 223, 604, 753
FauI CCCGC 1 cut(s) 750
FblI GTMKAC 1 cut(s) 437
Fnu4HI GCNGC 5 cut(s) 159, 240, 861, 993, 1140
FokI GGATG 6 cut(s) 34, 42, 214, 315, 887, 1196
FriOI GRGCYC 1 cut(s) 1200
Fsp4HI GCNGC 5 cut(s) 159, 240, 861, 993, 1140
FspBI CTAG 4 cut(s) 392, 561, 747, 1312
GluI GCNGC 5 cut(s) 159, 240, 861, 993, 1140
Hin1II CATG 5 cut(s) 133, 166, 227, 608, 757
HincII GTYRAC 1 cut(s) 1307
HindII GTYRAC 1 cut(s) 1307
HindIII AAGCTT 1 cut(s) 780
HinfI GANTC 7 cut(s) 210, 326, 335, 388, 499, 926, 1187
HphI GGTGA 3 cut(s) 138, 239, 773
Hpy166II GTNNAC 4 cut(s) 438, 776, 1070, 1307
Hpy188I TCNGA 3 cut(s) 663, 676, 1255
Hpy188III TCNNGA 5 cut(s) 392, 503, 791, 1229, 1289
Hpy8I GTNNAC 4 cut(s) 438, 776, 1070, 1307
HpyAV CCTTC 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 554, 956, 1028, 1136
HpyF3I CTNAG 8 cut(s) 69, 182, 195, 638, 660, 675, 1208, 1290
Hsp92II CATG 5 cut(s) 133, 166, 227, 608, 757
Kzo9I GATC 3 cut(s) 515, 703, 1222
LmnI GCTCC 4 cut(s) 424, 568, 1109, 1203
Lsp1109I GCAGC 5 cut(s) 145, 251, 847, 979, 1126
LweI GCATC 4 cut(s) 236, 349, 544, 566
MaeI CTAG 4 cut(s) 392, 561, 747, 1312
MaeIII GTNAC 1 cut(s) 749
MalI GATC 3 cut(s) 517, 705, 1224
MboI GATC 3 cut(s) 515, 703, 1222
MboII GAAGA 8 cut(s) 103, 393, 508, 698, 806, 980, 983, 1268
MflI RGATCY 1 cut(s) 1222
MhlI GDGCHC 1 cut(s) 1200
MluCI AATT 9 cut(s) 142, 363, 462, 524, 633, 764, 916, 983, 1234
MlyI GAGTC 2 cut(s) 219, 335
MmeI TCCRAC 2 cut(s) 68, 493
MnlI CCTC 3 cut(s) 128, 308, 1236
Mph1103I ATGCAT 3 cut(s) 229, 559, 811
MseI TTAA 5 cut(s) 123, 449, 768, 851, 1098
MspR9I CCNGG 1 cut(s) 423
Mva1269I GAATGC 3 cut(s) 62, 117, 1244
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 5 cut(s) 24, 554, 956, 1028, 1136
NdeII GATC 3 cut(s) 515, 703, 1222
NlaIII CATG 5 cut(s) 133, 166, 227, 608, 757
NlaIV GGNNCC 1 cut(s) 1224
NsiI ATGCAT 3 cut(s) 229, 559, 811
NspI RCATGY 2 cut(s) 227, 757
PctI GAATGC 3 cut(s) 62, 117, 1244
PfeI GAWTC 5 cut(s) 335, 388, 499, 926, 1187
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 5 cut(s) 160, 241, 862, 994, 1141
PleI GAGTC 2 cut(s) 218, 334
PpsI GAGTC 2 cut(s) 218, 334
PshBI ATTAAT 2 cut(s) 449, 1098
Psp124BI GAGCTC 1 cut(s) 1200
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 1224
PspPI GGNCC 1 cut(s) 1148
PsuI RGATCY 1 cut(s) 1222
RsaI GTAC 2 cut(s) 898, 1015
RsaNI GTAC 2 cut(s) 897, 1014
SacI GAGCTC 1 cut(s) 1200
SaqAI TTAA 5 cut(s) 123, 449, 768, 851, 1098
SatI GCNGC 5 cut(s) 159, 240, 861, 993, 1140
Sau3AI GATC 3 cut(s) 515, 703, 1222
Sau96I GGNCC 1 cut(s) 1148
SchI GAGTC 2 cut(s) 219, 335
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 1 cut(s) 1200
SfaNI GCATC 4 cut(s) 236, 349, 544, 566
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 1148
Sse9I AATT 9 cut(s) 142, 363, 462, 524, 633, 764, 916, 983, 1234
SsiI CCGC 1 cut(s) 757
SspI AATATT 1 cut(s) 97
SspMI CTAG 4 cut(s) 392, 561, 747, 1312
SstI GAGCTC 1 cut(s) 1200
StyD4I CCNGG 1 cut(s) 421
TaqI TCGA 3 cut(s) 357, 502, 589
TasI AATT 9 cut(s) 142, 363, 462, 524, 633, 764, 916, 983, 1234
TfiI GAWTC 5 cut(s) 335, 388, 499, 926, 1187
Tru1I TTAA 5 cut(s) 123, 449, 768, 851, 1098
Tru9I TTAA 5 cut(s) 123, 449, 768, 851, 1098
TscAI CASTG 1 cut(s) 73
TseI GCWGC 5 cut(s) 158, 239, 860, 992, 1139
TspDTI ATGAA 5 cut(s) 363, 401, 522, 558, 1179
TspGWI ACGGA 1 cut(s) 792
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 1148
VspI ATTAAT 2 cut(s) 449, 1098
XapI RAATTY 5 cut(s) 142, 524, 633, 764, 916
XbaI TCTAGA 1 cut(s) 391
XceI RCATGY 2 cut(s) 227, 757
XmiI GTMKAC 1 cut(s) 437
XspI CTAG 4 cut(s) 392, 561, 747, 1312
Zsp2I ATGCAT 3 cut(s) 229, 559, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.