RchiOBHm_Chr6g0252511

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000122
Physical Location & Seq
Forward (+)
7653489 .. 7654992
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22642

Sequence Viewer

Length: 948 bp
ATGACGGATCGCCGAAAACCCAAACGGTATAAAAATATTCTTTCATGGTTTACAAGTGATATTCCATCAAGTGGTAGTGGGAATGAAATCGGGAGTGGGAGTGGGAGTAGAAATGTGACTGAGAATTCTGTGAATGATGTTCCTATTAATGATTCTCCACCTATTCCACTAGAAGATGCTGCCATACACAAGTGGGAGACACTAAGAAACCCATCTAAGTATATTGAGAGAGTGATTAGCACACAGTCATCACAAGAAGTAGCAAATAACCGACTCCGGCTTATTACTACTATAGAGAGTGTAAGGTTGTTAGCCCACCAAGGATGTGCTTTTAGAGGGCGTGATGAATCCATTGATTCATCCAATGGTGGAAATTTCAATGCAGTTGTGAATTCTTTTGGAAGAATGAATATAGAAGTTCAAAAAGTCTTAGAAAATGCTCCTGGAAATGCCAAGTATACTTCTCCAGAAATTCAAAAACAAATTGCCAATATTTTTGCCAACAAGGTTAGAACCAAAATTCGTGAGGAAGTGGGAGATGCCAAGTTTTGTATCCTAGTTGATGAAGCAGTTGATGCATCTAATAAGGAGCAAATGGCTATCATTCTTCGATTTGTTGATTGTTATGGGTTTATTAGAGAACGGTTTTTCAAAGTTATTAGTGTTGTAGACACTTGTTCTCAAACTTTGAAAAATGAGATATCCAAAGTTCTTGCTCAATATGATCTTCAGGTAGAAAACATGCGTGGCCAAGGATATGATGGTGCTAGCAACATGCGGGGTGAATTTAATGGTTTACAAGCTTTGTTTCGTGAAGAGTGTCCATCTGCATATTATGTGCATTGCTTTGCTCATCGCTTACAATTGACTTTAAATGCTGCAGCTAAAGGGGTGCATGATATTTGGGAATTTTTCTCTACTCTGAACTTCATTGTAAATTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

315

Amino Acids

35.39

Weight (kDa)

6.96

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 60 - 265 3.2e-53 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AccI GTMKAC 2 cut(s) 458, 669
AciI CCGC 1 cut(s) 778
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 748
AcsI RAATTY 8 cut(s) 124, 373, 391, 471, 519, 785, 908, 937
AcuI CTGAAG 1 cut(s) 713
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 5 cut(s) 379, 422, 476, 652, 691
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 2 cut(s) 803, 884
AluI AGCT 2 cut(s) 803, 884
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 1 cut(s) 15
AoxI GGCC 1 cut(s) 748
ApeKI GCWGC 3 cut(s) 179, 878, 881
ApoI RAATTY 8 cut(s) 124, 373, 391, 471, 519, 785, 908, 937
AseI ATTAAT 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 794
AsuNHI GCTAGC 1 cut(s) 767
BalI TGGCCA 1 cut(s) 750
BbvI GCAGC 3 cut(s) 166, 865, 893
BccI CCATC 4 cut(s) 73, 220, 755, 832
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 563
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 3 cut(s) 170, 557, 768
BfmI CTRYAG 2 cut(s) 291, 879
BfuI GTATCC 1 cut(s) 563
BisI GCNGC 3 cut(s) 180, 879, 882
BlsI GCNGC 3 cut(s) 181, 880, 883
Bme1390I CCNGG 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 4 cut(s) 166, 529, 565, 587
BmtI GCTAGC 1 cut(s) 771
BpmI CTGGAG 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 319, 751
BsaXI ACNNNNNCTCC 4 cut(s) 85, 91, 115, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 841
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 319, 751
BseGI GGATG 2 cut(s) 329, 359
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMI GCAATG 1 cut(s) 841
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 3 cut(s) 166, 865, 893
BshFI GGCC 1 cut(s) 750
BsiSI CCGG 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 750
Bsp143I GATC 2 cut(s) 7, 724
BspACI CCGC 1 cut(s) 778
BspANI GGCC 1 cut(s) 750
BspCNI CTCAG 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 883
BspOI GCTAGC 1 cut(s) 771
BspPI GGATC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 841
BssECI CCNNGG 2 cut(s) 319, 751
BssMI GATC 2 cut(s) 7, 724
BssNAI GTATAC 1 cut(s) 459
BssT1I CCWWGG 2 cut(s) 319, 751
Bst1107I GTATAC 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 3 cut(s) 27, 246, 645
Bst6I CTCTTC 1 cut(s) 810
BstAPI GCANNNNNTGC 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 769
BstDEI CTNAG 4 cut(s) 120, 203, 216, 430
BstF5I GGATG 2 cut(s) 329, 359
BstKTI GATC 2 cut(s) 10, 727
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 7, 724
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 2 cut(s) 745, 778
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 2 cut(s) 291, 879
BstV1I GCAGC 3 cut(s) 166, 865, 893
BstZ17I GTATAC 1 cut(s) 459
BsuI GTATCC 1 cut(s) 563
BsuRI GGCC 1 cut(s) 750
BtgZI GCGATG 1 cut(s) 839
BtsCI GGATG 2 cut(s) 329, 359
Cac8I GCNNGC 1 cut(s) 769
CviAII CATG 4 cut(s) 45, 742, 775, 896
CviJI RGCY 6 cut(s) 280, 314, 599, 750, 803, 884
CviKI_1 RGCY 6 cut(s) 280, 314, 599, 750, 803, 884
DdeI CTNAG 4 cut(s) 120, 203, 216, 430
DpnI GATC 2 cut(s) 9, 726
DpnII GATC 2 cut(s) 7, 724
DraI TTTAAA 1 cut(s) 873
EaeI YGGCCR 1 cut(s) 748
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Eco130I CCWWGG 2 cut(s) 319, 751
Eco32I GATATC 1 cut(s) 702
Eco57I CTGAAG 1 cut(s) 713
EcoRI GAATTC 2 cut(s) 124, 391
EcoRII CCWGG 1 cut(s) 442
EcoRV GATATC 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 319, 751
EcoT22I ATGCAT 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 319, 751
FaeI CATG 4 cut(s) 48, 745, 778, 899
FatI CATG 4 cut(s) 44, 741, 774, 895
FauI CCCGC 1 cut(s) 771
FblI GTMKAC 2 cut(s) 458, 669
Fnu4HI GCNGC 3 cut(s) 180, 879, 882
FokI GGATG 2 cut(s) 336, 346
Fsp4HI GCNGC 3 cut(s) 180, 879, 882
FspBI CTAG 3 cut(s) 170, 557, 768
GluI GCNGC 3 cut(s) 180, 879, 882
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 1 cut(s) 750
HapII CCGG 1 cut(s) 277
Hin1II CATG 4 cut(s) 48, 745, 778, 899
HindIII AAGCTT 1 cut(s) 801
HinfI GANTC 4 cut(s) 152, 273, 347, 356
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 794
Hpy166II GTNNAC 4 cut(s) 51, 459, 670, 797
Hpy188I TCNGA 1 cut(s) 924
Hpy188III TCNNGA 5 cut(s) 91, 467, 524, 812, 945
Hpy8I GTNNAC 4 cut(s) 51, 459, 670, 797
HpyCH4III ACNGT 3 cut(s) 27, 246, 645
HpyCH4V TGCA 6 cut(s) 383, 578, 830, 841, 881, 895
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 4 cut(s) 120, 203, 216, 430
Hsp92II CATG 4 cut(s) 48, 745, 778, 899
Kzo9I GATC 2 cut(s) 7, 724
LmnI GCTCC 2 cut(s) 445, 589
LpnPI CCDG 5 cut(s) 290, 429, 456, 480, 716
Lsp1109I GCAGC 3 cut(s) 166, 865, 893
LweI GCATC 4 cut(s) 166, 529, 565, 587
MaeI CTAG 3 cut(s) 170, 557, 768
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 9, 726
MboI GATC 2 cut(s) 7, 724
MboII GAAGA 5 cut(s) 185, 414, 599, 719, 827
MfeI CAATTG 1 cut(s) 863
MlsI TGGCCA 1 cut(s) 750
MluNI TGGCCA 1 cut(s) 750
MlyI GAGTC 1 cut(s) 267
MnlI CCTC 2 cut(s) 329, 520
Mox20I TGGCCA 1 cut(s) 750
Mph1103I ATGCAT 1 cut(s) 580
MscI TGGCCA 1 cut(s) 750
MseI TTAA 3 cut(s) 147, 789, 872
Msp20I TGGCCA 1 cut(s) 750
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 444
MunI CAATTG 1 cut(s) 863
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 575
NdeII GATC 2 cut(s) 7, 724
NheI GCTAGC 1 cut(s) 767
NlaIII CATG 4 cut(s) 48, 745, 778, 899
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 2 cut(s) 745, 778
PfeI GAWTC 3 cut(s) 152, 347, 356
PflMI CCANNNNNTGG 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 3 cut(s) 181, 880, 883
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PshBI ATTAAT 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PstI CTGCAG 1 cut(s) 883
SaqAI TTAA 3 cut(s) 147, 789, 872
SatI GCNGC 3 cut(s) 180, 879, 882
Sau3AI GATC 2 cut(s) 7, 724
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 444
SetI ASST 6 cut(s) 163, 308, 510, 735, 805, 886
SfaNI GCATC 4 cut(s) 166, 529, 565, 587
SfcI CTRYAG 2 cut(s) 291, 879
SsiI CCGC 1 cut(s) 778
SspI AATATT 2 cut(s) 37, 493
SspMI CTAG 3 cut(s) 170, 557, 768
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 2 cut(s) 319, 751
TaaI ACNGT 3 cut(s) 27, 246, 645
TaqI TCGA 1 cut(s) 610
TfiI GAWTC 3 cut(s) 152, 347, 356
Tru1I TTAA 3 cut(s) 147, 789, 872
Tru9I TTAA 3 cut(s) 147, 789, 872
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 3 cut(s) 179, 878, 881
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 7 cut(s) 33, 99, 348, 360, 422, 579, 919
TspGWI ACGGA 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 71
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 8 cut(s) 124, 373, 391, 471, 519, 785, 908, 937
XceI RCATGY 2 cut(s) 745, 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 758
XmiI GTMKAC 2 cut(s) 458, 669
XspI CTAG 3 cut(s) 170, 557, 768
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.