FvH4_4g00181

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000122
Physical Location & Seq
Forward (+)
198875 .. 208588
9714 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00181.t1

Sequence Viewer

Length: 435 bp
ATGGAAGATGAGTTTCTTGATGATTCAATGGTTCTTTACATTGAAAGAGAATATGCTGAGAGCATTGATAATGATTCTGTGATTTCTGAGTTTGAAGTGAGCGGGCCTCGCAGGGAACTTGGGGGACTTGTTTACTATGGACACCCGAAGAGAACTCACTGCAAGTCGCTTCTAGGCCATTCTCAGTCGTCAAGGCAAAAGACTGCTATGAGGGCTGAAGCACCGCATAGCTATCGTGGACCTCGATTGAAGAACGGCGAGGTCGCTCAATTTGGGAGAGGCGAATCGGCAAGGTTGATCAGTTTGGGAGAGGGGAAACAGCAAGCGCCTTCGACGCATAGTTCCGCCTTGACCAAGACCGCCTTAGACTCGCCTGCAACGCCTCGGCGGCGCCTTGACCGCCTAGGCGGCTGGCCGCCTAACCTGAACGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

145

Amino Acids

15.98

Weight (kDa)

7.92

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 390
AccBSI CCGCTC 1 cut(s) 102
AciI CCGC 8 cut(s) 102, 224, 345, 360, 388, 400, 408, 416
AcoI YGGCCR 1 cut(s) 413
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 391
AgsI TTSAA 4 cut(s) 27, 44, 95, 250
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
AoxI GGCC 3 cut(s) 104, 175, 413
AspA2I CCTAGG 1 cut(s) 403
AspLEI GCGC 2 cut(s) 328, 393
AspS9I GGNCC 2 cut(s) 104, 239
AvaII GGWCC 1 cut(s) 239
AvrII CCTAGG 1 cut(s) 403
BanI GGYRCC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BclI TGATCA 1 cut(s) 297
BfaI CTAG 3 cut(s) 173, 404, 433
BfoI RGCGCY 2 cut(s) 329, 394
BglI GCCNNNNNGGC 2 cut(s) 388, 408
BisI GCNGC 3 cut(s) 389, 409, 416
BlnI CCTAGG 1 cut(s) 403
BlsI GCNGC 3 cut(s) 390, 410, 417
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 104, 239
BmiI GGNNCC 1 cut(s) 392
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BsaHI GRCGYC 1 cut(s) 391
BsaJI CCNNGG 2 cut(s) 383, 403
BseDI CCNNGG 2 cut(s) 383, 403
BseMII CTCAG 3 cut(s) 48, 78, 197
BshFI GGCC 3 cut(s) 106, 177, 415
BshNI GGYRCC 1 cut(s) 390
BslFI GGGAC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 3 cut(s) 106, 177, 415
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 8 cut(s) 102, 224, 345, 360, 388, 400, 408, 416
BspANI GGCC 3 cut(s) 106, 177, 415
BspCNI CTCAG 3 cut(s) 49, 79, 196
BspLI GGNNCC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 390
BsrBI CCGCTC 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 383, 403
BssMI GATC 1 cut(s) 297
BssNI GRCGYC 1 cut(s) 391
BssT1I CCWWGG 1 cut(s) 403
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 391
BstC8I GCNNGC 4 cut(s) 104, 324, 375, 413
BstDEI CTNAG 4 cut(s) 57, 87, 183, 364
BstH2I RGCGCY 2 cut(s) 329, 394
BstHHI GCGC 2 cut(s) 328, 393
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 7 cut(s) 108, 212, 334, 379, 388, 399, 408
BsuRI GGCC 3 cut(s) 106, 177, 415
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 4 cut(s) 104, 324, 375, 413
CfoI GCGC 2 cut(s) 328, 393
Cfr13I GGNCC 2 cut(s) 104, 239
CseI GACGC 1 cut(s) 343
CviJI RGCY 6 cut(s) 106, 177, 215, 231, 411, 415
CviKI_1 RGCY 6 cut(s) 106, 177, 215, 231, 411, 415
DdeI CTNAG 4 cut(s) 57, 87, 183, 364
DinI GGCGCC 1 cut(s) 392
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
EaeI YGGCCR 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 403
EgeI GGCGCC 1 cut(s) 392
EheI GGCGCC 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 403
FaiI YATR 5 cut(s) 54, 138, 209, 228, 339
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 138
FauI CCCGC 1 cut(s) 95
FbaI TGATCA 1 cut(s) 297
Fnu4HI GCNGC 3 cut(s) 389, 409, 416
Fsp4HI GCNGC 3 cut(s) 389, 409, 416
FspBI CTAG 3 cut(s) 173, 404, 433
GlaI GCGC 2 cut(s) 327, 392
GluI GCNGC 3 cut(s) 389, 409, 416
HaeII RGCGCY 2 cut(s) 329, 394
HaeIII GGCC 3 cut(s) 106, 177, 415
HgaI GACGC 1 cut(s) 343
HhaI GCGC 2 cut(s) 328, 393
Hin1I GRCGYC 1 cut(s) 391
Hin6I GCGC 2 cut(s) 326, 391
HinP1I GCGC 2 cut(s) 326, 391
HinfI GANTC 4 cut(s) 23, 74, 284, 368
Hpy166II GTNNAC 2 cut(s) 133, 239
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 2 cut(s) 133, 239
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 162, 377
HpyF10VI GCNNNNNNNGC 7 cut(s) 108, 212, 334, 379, 388, 399, 408
HpyF3I CTNAG 4 cut(s) 57, 87, 183, 364
Hsp92I GRCGYC 1 cut(s) 391
HspAI GCGC 2 cut(s) 326, 391
KasI GGCGCC 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 1 cut(s) 297
LpnPI CCDG 3 cut(s) 97, 387, 397
MaeI CTAG 3 cut(s) 173, 404, 433
MalI GATC 1 cut(s) 299
MbiI CCGCTC 1 cut(s) 102
MboI GATC 1 cut(s) 297
MboII GAAGA 3 cut(s) 17, 160, 262
MluCI AATT 1 cut(s) 269
Mly113I GGCGCC 1 cut(s) 391
MlyI GAGTC 1 cut(s) 362
MnlI CCTC 7 cut(s) 117, 204, 252, 253, 272, 304, 393
MwoI GCNNNNNNNGC 7 cut(s) 108, 212, 334, 379, 388, 399, 408
NarI GGCGCC 1 cut(s) 391
NdeII GATC 1 cut(s) 297
NlaIV GGNNCC 1 cut(s) 392
NmeAIII GCCGAG 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PfeI GAWTC 3 cut(s) 23, 74, 284
PkrI GCNGC 3 cut(s) 390, 410, 417
PleI GAGTC 1 cut(s) 362
PluTI GGCGCC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 2 cut(s) 104, 239
SatI GCNGC 3 cut(s) 389, 409, 416
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 2 cut(s) 104, 239
SchI GAGTC 1 cut(s) 362
SetI ASST 5 cut(s) 233, 244, 264, 296, 426
SfoI GGCGCC 1 cut(s) 392
SinI GGWCC 1 cut(s) 239
Sse9I AATT 1 cut(s) 269
SsiI CCGC 8 cut(s) 102, 224, 345, 360, 388, 400, 408, 416
SspDI GGCGCC 1 cut(s) 390
SspMI CTAG 3 cut(s) 173, 404, 433
StyI CCWWGG 1 cut(s) 403
TaqI TCGA 2 cut(s) 244, 332
TasI AATT 1 cut(s) 269
TauI GCSGC 3 cut(s) 391, 411, 418
TfiI GAWTC 3 cut(s) 23, 74, 284
TscAI CASTG 1 cut(s) 164
TspRI CASTG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 239
XmaJI CCTAGG 1 cut(s) 403
XspI CTAG 3 cut(s) 173, 404, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.