FvH4_3g23261

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000122
Physical Location & Seq
Forward (+)
16327223 .. 16328095
873 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23261.t1

Sequence Viewer

Length: 873 bp
ATGTTGTCAAATAACATTCGTGTTGGGGTGGAGATAAACTTGGCTGATCTTCCTTCAGATCCTAGATTACGAAAGAGTATTTCAGACTATGATTCAAACATTCGAGACCAAGTTCAAAGAGAATATCTTCAGAGTCCTTGTCAGCCTAAAGATCACAAATGTCTTAAGACTCCGTGTGGAGCTAAGGAACGAAGGTTCATAACAGATTGGTTCATTGATTTTCCTAACTGGTTGGAATATAGCATCGAGAAGGATGCTGCATTTTGTTTGTGCTGCTACCTATTCAAAACAAACAGCAGAGGACAAGCAGGCGGCGACGTTTTCACTAAAAATGGTTATCGAAATTGGAAGAAGAAAAGAAGGTTATATACTCATGTTGGAGACCTCAACAATGCTCATAACCAAGCTTTGAAGAAGTGTGAATACTTGATGAATGAAAGACAACATGTTCGAAACAGTATCCAGAAGAATGCTAAGCCATCCAGAACATCTTATCAAATTCGGCTCACTGCATCTGTCGATTGCAGACGGTTTCTTCTAAGACAAGGCCTTGCATTCCGGGGCCATGATGAATCTAATAATTCCAGCAATCAAGGTAACTTTCTTGAGCTTTTACAATTCCTTGCTGATCATGATGAGCAAGTTAGAGCTGTGGCATTGCATAATGCTCCTGAAAACCTCAAAATGACATCATCAATGATTCAAAAAGATATAGTAAATGCTGCTGCTGTTGAAACAATAAATGCCATAATTGCAGACATGGATAATGCATTGTTCTCTATTCTAGTTGATGAAGCTAGAGATGTTTCTGTAAAAGAGCAGATGGCTGTTATTTTTTGTTACGTGGATAAGAAAGGTTGTGTGATAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

291

Amino Acids

33.3

Weight (kDa)

8.61

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 106 - 289 7.1e-55 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 312
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 498
AcuI CTGAAG 2 cut(s) 39, 113
AflII CTTAAG 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 6 cut(s) 96, 116, 286, 412, 704, 734
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 5 cut(s) 182, 407, 610, 650, 797
AluI AGCT 5 cut(s) 182, 407, 610, 650, 797
Alw26I GTCTC 2 cut(s) 99, 375
AlwI GGATC 1 cut(s) 53
AoxI GGCC 2 cut(s) 547, 562
ApeKI GCWGC 4 cut(s) 257, 273, 722, 725
ApoI RAATTY 1 cut(s) 498
ArsI GACNNNNNNTTYG 2 cut(s) 432, 464
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 562
AsuC2I CCSGG 1 cut(s) 560
AsuII TTCGAA 1 cut(s) 451
BarI GAAGNNNNNNTAC 4 cut(s) 352, 384, 407, 439
BbvI GCAGC 4 cut(s) 244, 260, 709, 712
BccI CCATC 2 cut(s) 487, 817
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciVI GTATCC 1 cut(s) 470
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 2 cut(s) 99, 375
BfaI CTAG 3 cut(s) 63, 785, 798
BfrI CTTAAG 1 cut(s) 164
BfuI GTATCC 1 cut(s) 470
BisI GCNGC 5 cut(s) 258, 274, 313, 723, 726
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 5 cut(s) 259, 275, 314, 724, 727
Bme1390I CCNGG 1 cut(s) 560
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 1 cut(s) 563
BmrFI CCNGG 1 cut(s) 560
BmsI GCATC 3 cut(s) 244, 252, 521
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 474
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 1 cut(s) 560
BsaAI YACGTR 1 cut(s) 844
BsaI GGTCTC 2 cut(s) 99, 375
BsaJI CCNNGG 1 cut(s) 559
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 656
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 2 cut(s) 259, 479
BseMI GCAATG 1 cut(s) 656
BseNI ACTGG 1 cut(s) 233
BseXI GCAGC 4 cut(s) 244, 260, 709, 712
BshFI GGCC 2 cut(s) 549, 564
BsiSI CCGG 1 cut(s) 559
BsmAI GTCTC 2 cut(s) 99, 375
BsmI GAATGC 2 cut(s) 475, 554
BsnI GGCC 2 cut(s) 549, 564
Bso31I GGTCTC 2 cut(s) 99, 375
Bsp119I TTCGAA 1 cut(s) 451
Bsp143I GATC 4 cut(s) 46, 58, 151, 628
Bsp1720I GCTNAGC 1 cut(s) 474
BspACI CCGC 1 cut(s) 312
BspANI GGCC 2 cut(s) 549, 564
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 1 cut(s) 563
BspPI GGATC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 451
BspTI CTTAAG 1 cut(s) 164
BspTNI GGTCTC 2 cut(s) 99, 375
BsrDI GCAATG 1 cut(s) 656
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 4 cut(s) 46, 58, 151, 628
Bst4CI ACNGT 2 cut(s) 458, 531
BstAFI CTTAAG 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 844
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 3 cut(s) 183, 474, 539
BstF5I GGATG 2 cut(s) 259, 479
BstKTI GATC 4 cut(s) 49, 61, 154, 631
BstMAI GTCTC 2 cut(s) 99, 375
BstMBI GATC 4 cut(s) 46, 58, 151, 628
BstMWI GCNNNNNNNGC 1 cut(s) 752
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 558
BstV1I GCAGC 4 cut(s) 244, 260, 709, 712
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 2 cut(s) 549, 564
BtsCI GGATG 2 cut(s) 259, 479
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 310
CciI TCATGA 1 cut(s) 631
Cfr13I GGNCC 1 cut(s) 562
CviAII CATG 5 cut(s) 374, 446, 566, 632, 760
DdeI CTNAG 3 cut(s) 183, 474, 539
DpnI GATC 4 cut(s) 48, 60, 153, 630
DpnII GATC 4 cut(s) 46, 58, 151, 628
Eco147I AGGCCT 1 cut(s) 549
Eco31I GGTCTC 2 cut(s) 99, 375
Eco57I CTGAAG 2 cut(s) 39, 113
EcoT22I ATGCAT 1 cut(s) 772
FaeI CATG 5 cut(s) 377, 449, 569, 635, 763
FatI CATG 5 cut(s) 373, 445, 565, 631, 759
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 5 cut(s) 258, 274, 313, 723, 726
FokI GGATG 2 cut(s) 266, 466
Fsp4HI GCNGC 5 cut(s) 258, 274, 313, 723, 726
FspBI CTAG 3 cut(s) 63, 785, 798
GluI GCNGC 5 cut(s) 258, 274, 313, 723, 726
HaeIII GGCC 2 cut(s) 549, 564
HapII CCGG 1 cut(s) 559
Hin1II CATG 5 cut(s) 377, 449, 569, 635, 763
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 5 cut(s) 92, 133, 169, 572, 700
HpaII CCGG 1 cut(s) 559
Hpy188I TCNGA 3 cut(s) 58, 85, 132
Hpy188III TCNNGA 7 cut(s) 104, 247, 463, 483, 605, 632, 671
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 4 cut(s) 63, 186, 244, 354
HpyCH4III ACNGT 2 cut(s) 458, 531
HpyCH4IV ACGT 2 cut(s) 318, 843
HpyCH4V TGCA 7 cut(s) 260, 512, 525, 554, 661, 755, 770
HpyF10VI GCNNNNNNNGC 1 cut(s) 752
HpyF3I CTNAG 3 cut(s) 183, 474, 539
HpySE526I ACGT 2 cut(s) 318, 843
Hsp92II CATG 5 cut(s) 377, 449, 569, 635, 763
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 4 cut(s) 46, 58, 151, 628
LmnI GCTCC 2 cut(s) 179, 673
LpnPI CCDG 7 cut(s) 214, 294, 476, 496, 572, 598, 684
Lsp1109I GCAGC 4 cut(s) 244, 260, 709, 712
LweI GCATC 3 cut(s) 244, 252, 521
MaeI CTAG 3 cut(s) 63, 785, 798
MaeII ACGT 2 cut(s) 318, 843
MaeIII GTNAC 2 cut(s) 596, 839
MalI GATC 4 cut(s) 48, 60, 153, 630
MboI GATC 4 cut(s) 46, 58, 151, 628
MboII GAAGA 7 cut(s) 41, 119, 361, 364, 424, 478, 527
MflI RGATCY 1 cut(s) 58
MluCI AATT 5 cut(s) 343, 498, 580, 617, 750
MlyI GAGTC 2 cut(s) 142, 163
MmeI TCCRAC 2 cut(s) 213, 358
MnlI CCTC 3 cut(s) 293, 395, 689
Mph1103I ATGCAT 1 cut(s) 772
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 1 cut(s) 165
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 1 cut(s) 559
MspR9I CCNGG 1 cut(s) 560
Mva1269I GAATGC 2 cut(s) 475, 554
MwoI GCNNNNNNNGC 1 cut(s) 752
NciI CCSGG 1 cut(s) 560
NdeII GATC 4 cut(s) 46, 58, 151, 628
NlaIII CATG 5 cut(s) 377, 449, 569, 635, 763
NlaIV GGNNCC 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 1 cut(s) 449
NspV TTCGAA 1 cut(s) 451
PagI TCATGA 1 cut(s) 631
PceI AGGCCT 1 cut(s) 549
PciI ACATGT 1 cut(s) 445
PctI GAATGC 2 cut(s) 475, 554
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 92, 572, 700
PkrI GCNGC 5 cut(s) 259, 275, 314, 724, 727
PleI GAGTC 2 cut(s) 141, 163
PpsI GAGTC 2 cut(s) 141, 163
Ppu21I YACGTR 1 cut(s) 844
PscI ACATGT 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 563
PspPI GGNCC 1 cut(s) 562
PsuI RGATCY 1 cut(s) 58
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 5 cut(s) 258, 274, 313, 723, 726
Sau3AI GATC 4 cut(s) 46, 58, 151, 628
Sau96I GGNCC 1 cut(s) 562
SchI GAGTC 2 cut(s) 142, 163
ScrFI CCNGG 1 cut(s) 560
SfaNI GCATC 3 cut(s) 244, 252, 521
SfuI TTCGAA 1 cut(s) 451
SmlI CTYRAG 2 cut(s) 164, 605
SmoI CTYRAG 2 cut(s) 164, 605
Sse9I AATT 5 cut(s) 343, 498, 580, 617, 750
SseBI AGGCCT 1 cut(s) 549
SsiI CCGC 1 cut(s) 312
SspMI CTAG 3 cut(s) 63, 785, 798
StuI AGGCCT 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 558
TaaI ACNGT 2 cut(s) 458, 531
TaiI ACGT 2 cut(s) 321, 846
TaqI TCGA 5 cut(s) 103, 246, 340, 451, 519
TasI AATT 5 cut(s) 343, 498, 580, 617, 750
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 3 cut(s) 92, 572, 700
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 514
TseI GCWGC 4 cut(s) 257, 273, 722, 725
TspDTI ATGAA 6 cut(s) 187, 202, 446, 450, 585, 807
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 514
Vha464I CTTAAG 1 cut(s) 164
XapI RAATTY 1 cut(s) 498
XceI RCATGY 1 cut(s) 449
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 3 cut(s) 63, 785, 798
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.