Rw2G048450

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000122
Physical Location & Seq
Forward (+)
76034975 .. 76037404
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048450.1

Sequence Viewer

Length: 1848 bp
ATGTCAAATCATGAGCCAAAAGCGAAGCGATCAAAATTCATTGACTCATGGTTTAAAAGAACAAATGTTGAGTCTTCAAGTTCAAATGTGGTTTCTGAACCTTCCATATCCTCTCCAAATATTGATGTTGAACCCCAACCTTCCATTCCTGAACCACAAAATAATATCAACGCTCTTGAACGTGATCCTGGATTACGTTGTGCCATATGGAAATATCCAGTCAATGAGCGTGATAGTATTCGAAAAACCTATGTTTTGTTGGGTCCATTTCAACCTGAGTTAGAATTTCCATTCACTGAACAAGGGAGTCAACAACGTAGATTTCAGTTTTCTTGGTTCAAGGACAATCCATGGCTTGAATATTCAATTGCTCTTGATAGGGTGTATTGCTTCCCTTGTTTTCTATTTGACACTGAAGATTCTCAGCATACAGCATTCACCGTTGATGGGTTTAAGGCTTGGAAGAGGGTTTGTGGTAGTGATAATGTGTTGATGAAGCATGTAGGAGGCCTTAATTCTCCCCATCATGCTGCAATGCAAAAATGGGATTTATTAAGAAATCCTACCAAACAAATTGAAACAATTTTTCAGTCAAAATCTAGTAAGGATATAGAGGACAATCGATTGAGGCTTAAGGCTTCAATAGAAAGTGTTGAGAGAGTTGTTTTGGGAAATGCTCCCGGAAATGCCAAGTACATTAGTCCATCAATTCAAAAGCAACTTCTAAATATTCTTGGTAATAAAGTGAGGAACAAGATACGTGAAGAAGTTGGAGATTCCAAATATTGTATTCTTGTTGATGAAGCAGTAGATATATCTAGTAAGGAACAAATGTGTCCTTATGCTTATTATGTGCATTGTTTTGCTCACCGCTTGCAATTGTCATTGAATGCTACAGCTAAAGGGGTGCCGGAGATTTGGCAATTATTTTCAAGTTTAAGTTTAATTGTGAATTTTGTTGATTCTTCTGCTAAGCGTCATTCTGCATTAAAAGTTGTGAGAAAGGAAGAAATTGCAGATTTGGTAGCGTGTGGCCAACTTCAAACAGTTCTTTGTCAGACATTGCAGCGAAAATCTCTTGACTTCGTACATGCTATGAAGTTTGTTGGACATACAAAATCATTTCTTCAAGAGATGAGAGAAGAAGGCTGGGATGACTTGGTAAGAAATGTTGAAACTTTTTGTGAGAAACATGATATTGATATGCCTGATATGAATGCTCGTTATAAGGATGGTACAGGTCGTCGTTGCCAACAAAGAGATTTCATTACAGTTGAGCATCATTACCATATAGATGTCTTCAATGCTTTAGTTGATTTTCAGTTGAGCGAGTTGAATAGAAGATTCTCAGACCAAACATCTGAACTTCTTATACTTAGTTCAACCTTGGATCCTCGTGATAACTTCAGTAATTTTAAAACTGAAGGTGCATGCAATCTTGCAAAGAAGTATTATCCTGAAGATTTTGTTGATAGTGAAATGTTTGCTCTAGAATTAGAGTGTGCATATTATGAGAAGGATATGCGTAGTGATCCAAAGTTCCAGAATTTGGAATCCATTTCTGATTTGTGCAGAATGTTGGTTCAATCAAGGAAGTCAGAATTTTTCCCTATGCTTTATAGATTGATTTGTCTAGTTTTGACTATTCCTGTTTCTACGGCGACCACTGAAAGGGCATTTTCAGCTATGAACATCATTAAGAATAAACTTAGAAACAAGATGGAGGATGAGTTTCTTGGTGATTGTATGGTCCTTCACATTGAGAAAGAATATGCTGAATCTATTGACAATGAATCGGTGATCAAAGAGTTTGAAGCTTGTGGAACTCGTAGAGTTAGATTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

615

Amino Acids

71.1

Weight (kDa)

6.08

Isoelectric Point (pI)

58.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 216 - 287 1.6e-10 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 528 - 589 9.1e-11 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1227
AccB1I GGYRCC 1 cut(s) 907
AccB7I CCANNNNNTGG 1 cut(s) 1549
AciI CCGC 1 cut(s) 871
AclWI GGATC 4 cut(s) 179, 1385, 1398, 1526
AcoI YGGCCR 1 cut(s) 1033
AcsI RAATTY 5 cut(s) 35, 284, 952, 1546, 1601
AcuI CTGAAG 4 cut(s) 435, 1390, 1443, 1479
AfaI GTAC 3 cut(s) 695, 1089, 1237
AfiI CCNNNNNNNGG 3 cut(s) 447, 1549, 1671
AflII CTTAAG 1 cut(s) 632
AjnI CCWGG 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 3 cut(s) 899, 1685, 1817
AluI AGCT 3 cut(s) 899, 1685, 1817
AlwI GGATC 4 cut(s) 179, 1385, 1398, 1526
AoxI GGCC 2 cut(s) 508, 1033
ApeKI GCWGC 2 cut(s) 530, 1066
ApoI RAATTY 5 cut(s) 35, 284, 952, 1546, 1601
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspS9I GGNCC 2 cut(s) 263, 1750
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 4 cut(s) 430, 860, 1751, 1810
AsuII TTCGAA 1 cut(s) 241
AvaII GGWCC 2 cut(s) 263, 1750
BalI TGGCCA 1 cut(s) 1035
BamHI GGATCC 1 cut(s) 1390
BanI GGYRCC 1 cut(s) 907
BauI CACGAG 1 cut(s) 1395
BbsI GAAGAC 2 cut(s) 66, 1291
BbvI GCAGC 2 cut(s) 517, 1078
BccI CCATC 5 cut(s) 440, 531, 712, 1226, 1714
BceAI ACGGC 1 cut(s) 1674
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 1800
BcnI CCSGG 1 cut(s) 681
BfaI CTAG 4 cut(s) 600, 819, 1490, 1634
BfmI CTRYAG 1 cut(s) 894
BfrI CTTAAG 1 cut(s) 632
BisI GCNGC 2 cut(s) 531, 1067
BlpI GCTNAGC 1 cut(s) 972
BlsI GCNGC 2 cut(s) 532, 1068
Bme1390I CCNGG 2 cut(s) 189, 681
Bme18I GGWCC 2 cut(s) 263, 1750
BmgT120I GGNCC 2 cut(s) 263, 1750
BmiI GGNNCC 3 cut(s) 264, 909, 1392
BmrFI CCNGG 2 cut(s) 189, 681
BmsI GCATC 1 cut(s) 1288
BpiI GAAGAC 2 cut(s) 66, 1291
Bpu1102I GCTNAGC 1 cut(s) 972
Bpu14I TTCGAA 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 681
Bsa29I ATCGAT 1 cut(s) 622
BsaAI YACGTR 1 cut(s) 761
BsaJI CCNNGG 2 cut(s) 350, 1386
BsaXI ACNNNNNCTCC 2 cut(s) 1715, 1745
Bsc4I CCNNNNNNNGG 3 cut(s) 447, 1549, 1671
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 2 cut(s) 540, 1061
BseBI CCWGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 622
BseDI CCNNGG 2 cut(s) 350, 1386
BseGI GGATG 3 cut(s) 1159, 1237, 1732
BseLI CCNNNNNNNGG 3 cut(s) 447, 1549, 1671
BseMI GCAATG 2 cut(s) 540, 1061
BseMII CTCAG 3 cut(s) 267, 437, 1362
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 517, 1078
BseYI CCCAGC 1 cut(s) 1149
BsgI GTGCAG 1 cut(s) 1591
BshFI GGCC 2 cut(s) 510, 1035
BshNI GGYRCC 1 cut(s) 907
BshVI ATCGAT 1 cut(s) 622
BsiSI CCGG 2 cut(s) 681, 911
BslI CCNNNNNNNGG 3 cut(s) 447, 1549, 1671
BsmI GAATGC 3 cut(s) 434, 895, 1222
BsnI GGCC 2 cut(s) 510, 1035
Bsp119I TTCGAA 1 cut(s) 241
Bsp143I GATC 5 cut(s) 29, 184, 1390, 1531, 1800
Bsp1720I GCTNAGC 1 cut(s) 972
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 1 cut(s) 871
BspANI GGCC 2 cut(s) 510, 1035
BspCNI CTCAG 3 cut(s) 268, 436, 1361
BspDI ATCGAT 1 cut(s) 622
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 3 cut(s) 264, 909, 1392
BspPI GGATC 4 cut(s) 179, 1385, 1398, 1526
BspT104I TTCGAA 1 cut(s) 241
BspT107I GGYRCC 1 cut(s) 907
BspTI CTTAAG 1 cut(s) 632
BsrDI GCAATG 2 cut(s) 540, 1061
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 350, 1386
BssMI GATC 5 cut(s) 29, 184, 1390, 1531, 1800
BssSI CACGAG 1 cut(s) 1395
BssT1I CCWWGG 2 cut(s) 350, 1386
Bst2BI CACGAG 1 cut(s) 1395
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 3 cut(s) 442, 1048, 1273
Bst6I CTCTTC 1 cut(s) 458
BstAFI CTTAAG 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 761
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 875, 1432
BstDEI CTNAG 6 cut(s) 276, 423, 972, 1348, 1376, 1709
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 3 cut(s) 1159, 1237, 1732
BstKTI GATC 5 cut(s) 32, 187, 1393, 1534, 1803
BstMBI GATC 5 cut(s) 29, 184, 1390, 1531, 1800
BstMWI GCNNNNNNNGC 1 cut(s) 1682
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 3 cut(s) 503, 1094, 1434
BstSCI CCNGG 2 cut(s) 187, 679
BstSFI CTRYAG 1 cut(s) 894
BstV1I GCAGC 2 cut(s) 517, 1078
BstV2I GAAGAC 2 cut(s) 66, 1291
BstX2I RGATCY 1 cut(s) 1390
BstYI RGATCY 1 cut(s) 1390
Bsu15I ATCGAT 1 cut(s) 622
BsuRI GGCC 2 cut(s) 510, 1035
BsuTUI ATCGAT 1 cut(s) 622
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 3 cut(s) 1159, 1237, 1732
BtsIMutI CAGTG 3 cut(s) 294, 411, 1665
Cac8I GCNNGC 2 cut(s) 875, 1432
CciI TCATGA 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 263, 1750
ClaI ATCGAT 1 cut(s) 622
CseI GACGC 1 cut(s) 965
Csp6I GTAC 3 cut(s) 694, 1088, 1236
CviAII CATG 8 cut(s) 11, 48, 351, 500, 527, 1091, 1193, 1431
CviQI GTAC 3 cut(s) 694, 1088, 1236
DdeI CTNAG 6 cut(s) 276, 423, 972, 1348, 1376, 1709
DpnI GATC 5 cut(s) 31, 186, 1392, 1533, 1802
DpnII GATC 5 cut(s) 29, 184, 1390, 1531, 1800
DraI TTTAAA 2 cut(s) 55, 1417
EaeI YGGCCR 1 cut(s) 1033
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Eco130I CCWWGG 2 cut(s) 350, 1386
Eco147I AGGCCT 1 cut(s) 510
Eco47I GGWCC 2 cut(s) 263, 1750
Eco57I CTGAAG 4 cut(s) 435, 1390, 1443, 1479
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 350, 1386
ErhI CCWWGG 2 cut(s) 350, 1386
FaeI CATG 8 cut(s) 14, 51, 354, 503, 530, 1094, 1196, 1434
FatI CATG 8 cut(s) 10, 47, 350, 499, 526, 1090, 1192, 1430
FauNDI CATATG 1 cut(s) 206
FbaI TGATCA 1 cut(s) 1800
Fnu4HI GCNGC 2 cut(s) 531, 1067
FokI GGATG 3 cut(s) 1166, 1244, 1739
Fsp4HI GCNGC 2 cut(s) 531, 1067
FspBI CTAG 4 cut(s) 600, 819, 1490, 1634
GluI GCNGC 2 cut(s) 531, 1067
GsaI CCCAGC 1 cut(s) 1153
HaeIII GGCC 2 cut(s) 510, 1035
HapII CCGG 2 cut(s) 681, 911
HgaI GACGC 1 cut(s) 965
Hin1II CATG 8 cut(s) 14, 51, 354, 503, 530, 1094, 1196, 1434
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 1815
HpaII CCGG 2 cut(s) 681, 911
HphI GGTGA 4 cut(s) 430, 860, 1751, 1810
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 6 cut(s) 97, 1059, 1351, 1363, 1564, 1600
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 1 cut(s) 1248
HpyAV CCTTC 6 cut(s) 111, 150, 1139, 1418, 1510, 1763
HpyCH4III ACNGT 3 cut(s) 442, 1048, 1273
HpyCH4IV ACGT 4 cut(s) 181, 196, 316, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 1682
HpyF3I CTNAG 6 cut(s) 276, 423, 972, 1348, 1376, 1709
HpySE526I ACGT 4 cut(s) 181, 196, 316, 760
Hsp92II CATG 8 cut(s) 14, 51, 354, 503, 530, 1094, 1196, 1434
Ksp22I TGATCA 1 cut(s) 1800
Kzo9I GATC 5 cut(s) 29, 184, 1390, 1531, 1800
LmnI GCTCC 1 cut(s) 682
Lsp1109I GCAGC 2 cut(s) 517, 1078
LweI GCATC 1 cut(s) 1288
MaeI CTAG 4 cut(s) 600, 819, 1490, 1634
MaeII ACGT 4 cut(s) 181, 196, 316, 760
MalI GATC 5 cut(s) 31, 186, 1392, 1533, 1802
MboI GATC 5 cut(s) 29, 184, 1390, 1531, 1800
MfeI CAATTG 2 cut(s) 366, 878
MflI RGATCY 1 cut(s) 1390
MlsI TGGCCA 1 cut(s) 1035
MluNI TGGCCA 1 cut(s) 1035
MlyI GAGTC 3 cut(s) 38, 80, 316
MmeI TCCRAC 2 cut(s) 751, 1087
MnlI CCTC 8 cut(s) 121, 459, 500, 607, 621, 741, 1404, 1717
Mox20I TGGCCA 1 cut(s) 1035
MscI TGGCCA 1 cut(s) 1035
MslI CAYNNNNRTG 1 cut(s) 1293
Msp20I TGGCCA 1 cut(s) 1035
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 2 cut(s) 681, 911
MspR9I CCNGG 2 cut(s) 189, 681
MunI CAATTG 2 cut(s) 366, 878
Mva1269I GAATGC 3 cut(s) 434, 895, 1222
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 1682
NciI CCSGG 1 cut(s) 681
NcoI CCATGG 1 cut(s) 350
NdeI CATATG 1 cut(s) 206
NdeII GATC 5 cut(s) 29, 184, 1390, 1531, 1800
NlaIII CATG 8 cut(s) 14, 51, 354, 503, 530, 1094, 1196, 1434
NlaIV GGNNCC 3 cut(s) 264, 909, 1392
NspI RCATGY 3 cut(s) 503, 1094, 1434
NspV TTCGAA 1 cut(s) 241
PaeI GCATGC 1 cut(s) 1434
PagI TCATGA 1 cut(s) 10
PceI AGGCCT 1 cut(s) 510
PctI GAATGC 3 cut(s) 434, 895, 1222
PfeI GAWTC 7 cut(s) 419, 776, 962, 1344, 1553, 1778, 1793
PflMI CCANNNNNTGG 1 cut(s) 1549
PfoI TCCNGGA 2 cut(s) 187, 679
PkrI GCNGC 2 cut(s) 532, 1068
PleI GAGTC 3 cut(s) 38, 79, 315
PpsI GAGTC 3 cut(s) 38, 79, 315
Ppu21I YACGTR 1 cut(s) 761
PsiI TTATAA 1 cut(s) 1227
Psp6I CCWGG 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 1149
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 3 cut(s) 264, 909, 1392
PspPI GGNCC 2 cut(s) 263, 1750
PsrI GAACNNNNNNTAC 2 cut(s) 1356, 1388
PsuI RGATCY 1 cut(s) 1390
RsaI GTAC 3 cut(s) 695, 1089, 1237
RsaNI GTAC 3 cut(s) 694, 1088, 1236
RseI CAYNNNNRTG 1 cut(s) 1293
SatI GCNGC 2 cut(s) 531, 1067
Sau3AI GATC 5 cut(s) 29, 184, 1390, 1531, 1800
Sau96I GGNCC 2 cut(s) 263, 1750
SchI GAGTC 3 cut(s) 38, 80, 316
ScrFI CCNGG 2 cut(s) 189, 681
SfaNI GCATC 1 cut(s) 1288
SfcI CTRYAG 1 cut(s) 894
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 2 cut(s) 263, 1750
SmiMI CAYNNNNRTG 1 cut(s) 1293
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
SphI GCATGC 1 cut(s) 1434
SseBI AGGCCT 1 cut(s) 510
SsiI CCGC 1 cut(s) 871
SspI AATATT 4 cut(s) 121, 362, 730, 785
SspMI CTAG 4 cut(s) 600, 819, 1490, 1634
StuI AGGCCT 1 cut(s) 510
StyD4I CCNGG 2 cut(s) 187, 679
StyI CCWWGG 2 cut(s) 350, 1386
TaaI ACNGT 3 cut(s) 442, 1048, 1273
TaiI ACGT 4 cut(s) 184, 199, 319, 763
TaqI TCGA 2 cut(s) 241, 622
TatI WGTACW 1 cut(s) 693
TfiI GAWTC 7 cut(s) 419, 776, 962, 1344, 1553, 1778, 1793
TscAI CASTG 3 cut(s) 301, 418, 1672
TseI GCWGC 2 cut(s) 530, 1066
TspDTI ATGAA 8 cut(s) 28, 509, 816, 1112, 1229, 1255, 1703, 1806
TspRI CASTG 3 cut(s) 301, 418, 1672
Van91I CCANNNNNTGG 1 cut(s) 1549
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 2 cut(s) 263, 1750
XapI RAATTY 5 cut(s) 35, 284, 952, 1546, 1601
XbaI TCTAGA 1 cut(s) 1489
XceI RCATGY 3 cut(s) 503, 1094, 1434
XspI CTAG 4 cut(s) 600, 819, 1490, 1634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.