Rmu_sc0027801.1_g000002

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027801.1
OG0000122
Physical Location & Seq
Reverse (-)
542 .. 2156
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027801.1_g000002.1.cds

Sequence Viewer

Length: 885 bp
atgatcggacgccccccttgggctgattgcttcccatctcatcttatctggacggggctggcttttgccttctcttccaattctaggcggttgctgtatcttaatctgaatcaaggaataatgcagaactcctgtcccgaactcggcaacggtgatgccactagatatggcggcggtgttgatcttgggtccttggggtcagtggcggagccagttaaggacgagcttgttaactattatgatccgaatattcgagaccaagttcgaagagaatatctgcaaaggggtccttgtcagcccatagaacacaaatttgttaaaaccaattttggagctaccaaacgaaggtttatatctgcttggttcgatgattttcctaactggttggaatatagtatagacaaagatcgagcatattgtctgtgctgctacctatttaaagcaaatattggagatcaagcaggtggtgatgtctttactagtgatggttttcgaaattggaaaaagaaagaaagattatatgatcatgtcggagaccacagcagtgctcataatcaagctttgaagaagtgtgaagccttgatgaatgaaaatcaacacattcgaaatattatccacaagaatgctaagcaatccagaacaaattatcgaattcggctcactgcatcagttgattgcattcggtttcttctaagacaaggccttgcatttcgaggccatgatgagtcggacaattcaagcaatcagggtaactttcttcaactcttacaatttcttgctgatcatgatcaagaagttagagctgttgctttgaaaaatggtcctgaaaacctcaaaatgacatcacctatgattcagaaagacagtaaatgctgctgcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

294

Amino Acids

33.57

Weight (kDa)

8.58

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 452
Acc36I ACCTGC 1 cut(s) 452
AciI CCGC 4 cut(s) 88, 171, 174, 206
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 2 cut(s) 311, 651
AcyI GRCGYC 1 cut(s) 10
AfiI CCNNNNNNNGG 4 cut(s) 19, 84, 143, 345
AgsI TTSAA 4 cut(s) 565, 738, 761, 814
AhlI ACTAGT 1 cut(s) 479
AleI CACNNNNGTG 1 cut(s) 543
AluBI AGCT 4 cut(s) 226, 335, 560, 803
AluI AGCT 4 cut(s) 226, 335, 560, 803
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 2 cut(s) 249, 528
AlwI GGATC 1 cut(s) 236
AoxI GGCC 2 cut(s) 700, 715
ApeKI GCWGC 3 cut(s) 426, 873, 876
ApoI RAATTY 2 cut(s) 311, 651
AspS9I GGNCC 3 cut(s) 189, 287, 821
AsuHPI GGTGA 3 cut(s) 164, 479, 837
AsuII TTCGAA 3 cut(s) 265, 493, 604
AvaII GGWCC 3 cut(s) 189, 287, 821
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 3 cut(s) 413, 860, 863
BccI CCATC 2 cut(s) 43, 479
BclI TGATCA 3 cut(s) 523, 781, 787
BcoDI GTCTC 2 cut(s) 249, 528
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 3 cut(s) 84, 162, 480
BfmI CTRYAG 1 cut(s) 877
BfuAI ACCTGC 1 cut(s) 452
BisI GCNGC 4 cut(s) 172, 427, 874, 877
BlpI GCTNAGC 1 cut(s) 627
BlsI GCNGC 4 cut(s) 173, 428, 875, 878
Bme18I GGWCC 3 cut(s) 189, 287, 821
BmgT120I GGNCC 3 cut(s) 189, 287, 821
BmiI GGNNCC 3 cut(s) 190, 210, 288
BmsI GCATC 2 cut(s) 145, 674
Bpu1102I GCTNAGC 1 cut(s) 627
Bpu14I TTCGAA 3 cut(s) 265, 493, 604
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 10
BsaI GGTCTC 2 cut(s) 249, 528
BsaJI CCNNGG 2 cut(s) 17, 192
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 84, 143, 345
Bse1I ACTGG 2 cut(s) 212, 386
Bse8I GATNNNNATC 1 cut(s) 786
BseDI CCNNGG 2 cut(s) 17, 192
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 4 cut(s) 19, 84, 143, 345
BseNI ACTGG 2 cut(s) 212, 386
BseXI GCAGC 3 cut(s) 413, 860, 863
BshFI GGCC 2 cut(s) 702, 717
BsiHKAI GWGCWC 1 cut(s) 550
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 4 cut(s) 19, 84, 143, 345
BsmAI GTCTC 2 cut(s) 249, 528
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 2 cut(s) 628, 678
BsnI GGCC 2 cut(s) 702, 717
Bso31I GGTCTC 2 cut(s) 249, 528
Bsp119I TTCGAA 3 cut(s) 265, 493, 604
Bsp1286I GDGCHC 1 cut(s) 550
Bsp143I GATC 8 cut(s) 3, 181, 241, 406, 454, 523, 781, 787
Bsp1720I GCTNAGC 1 cut(s) 627
BspACI CCGC 4 cut(s) 88, 171, 174, 206
BspANI GGCC 2 cut(s) 702, 717
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 3 cut(s) 190, 210, 288
BspMAI CTGCAG 1 cut(s) 881
BspMI ACCTGC 1 cut(s) 452
BspPI GGATC 1 cut(s) 236
BspT104I TTCGAA 3 cut(s) 265, 493, 604
BspTNI GGTCTC 2 cut(s) 249, 528
BsrI ACTGG 2 cut(s) 212, 386
BssECI CCNNGG 2 cut(s) 17, 192
BssMI GATC 8 cut(s) 3, 181, 241, 406, 454, 523, 781, 787
BssNI GRCGYC 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 17, 192
Bst4CI ACNGT 2 cut(s) 152, 866
Bst6I CTCTTC 2 cut(s) 79, 262
BstACI GRCGYC 1 cut(s) 10
BstBI TTCGAA 3 cut(s) 265, 493, 604
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 627, 692
BstKTI GATC 8 cut(s) 6, 184, 244, 409, 457, 526, 784, 790
BstMAI GTCTC 2 cut(s) 249, 528
BstMBI GATC 8 cut(s) 3, 181, 241, 406, 454, 523, 781, 787
BstSFI CTRYAG 1 cut(s) 877
BstV1I GCAGC 3 cut(s) 413, 860, 863
BsuRI GGCC 2 cut(s) 702, 717
BtsI GCAGTG 2 cut(s) 550, 660
BtsIMutI CAGTG 3 cut(s) 207, 550, 660
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 1 cut(s) 60
CciI TCATGA 1 cut(s) 784
Cfr13I GGNCC 3 cut(s) 189, 287, 821
CseI GACGC 1 cut(s) 18
CviAII CATG 3 cut(s) 527, 719, 785
DdeI CTNAG 2 cut(s) 627, 692
DpnI GATC 8 cut(s) 5, 183, 243, 408, 456, 525, 783, 789
DpnII GATC 8 cut(s) 3, 181, 241, 406, 454, 523, 781, 787
DraI TTTAAA 1 cut(s) 439
Eam1104I CTCTTC 2 cut(s) 79, 262
EarI CTCTTC 2 cut(s) 79, 262
EciI GGCGGA 1 cut(s) 221
Eco130I CCWWGG 2 cut(s) 17, 192
Eco147I AGGCCT 1 cut(s) 702
Eco31I GGTCTC 2 cut(s) 249, 528
Eco47I GGWCC 3 cut(s) 189, 287, 821
EcoO109I RGGNCCY 2 cut(s) 189, 287
EcoRI GAATTC 1 cut(s) 651
EcoT14I CCWWGG 2 cut(s) 17, 192
ErhI CCWWGG 2 cut(s) 17, 192
FaeI CATG 3 cut(s) 530, 722, 788
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FaqI GGGAC 1 cut(s) 120
FatI CATG 3 cut(s) 526, 718, 784
FbaI TGATCA 3 cut(s) 523, 781, 787
Fnu4HI GCNGC 4 cut(s) 172, 427, 874, 877
Fsp4HI GCNGC 4 cut(s) 172, 427, 874, 877
FspBI CTAG 3 cut(s) 84, 162, 480
GluI GCNGC 4 cut(s) 172, 427, 874, 877
HaeIII GGCC 2 cut(s) 702, 717
HgaI GACGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 3 cut(s) 530, 722, 788
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 3 cut(s) 109, 725, 853
HpaI GTTAAC 1 cut(s) 232
HphI GGTGA 3 cut(s) 164, 479, 837
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 6 cut(s) 8, 108, 246, 533, 730, 858
Hpy188III TCNNGA 7 cut(s) 49, 137, 254, 636, 785, 791, 824
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 79, 339
HpyCH4III ACNGT 2 cut(s) 152, 866
HpyCH4V TGCA 6 cut(s) 124, 280, 665, 678, 707, 879
HpyF3I CTNAG 2 cut(s) 627, 692
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 3 cut(s) 530, 722, 788
Ksp22I TGATCA 3 cut(s) 523, 781, 787
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 8 cut(s) 3, 181, 241, 406, 454, 523, 781, 787
LmnI GCTCC 2 cut(s) 208, 332
LpnPI CCDG 9 cut(s) 34, 44, 145, 225, 367, 447, 649, 731, 837
Lsp1109I GCAGC 3 cut(s) 413, 860, 863
LweI GCATC 2 cut(s) 145, 674
MaeI CTAG 3 cut(s) 84, 162, 480
MaeIII GTNAC 1 cut(s) 749
MalI GATC 8 cut(s) 5, 183, 243, 408, 456, 525, 783, 789
MboI GATC 8 cut(s) 3, 181, 241, 406, 454, 523, 781, 787
MboII GAAGA 5 cut(s) 66, 279, 577, 680, 749
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 8 cut(s) 79, 311, 325, 496, 643, 651, 733, 770
MlyI GAGTC 1 cut(s) 734
MmeI TCCRAC 3 cut(s) 366, 511, 708
MnlI CCTC 2 cut(s) 707, 842
MseI TTAA 5 cut(s) 102, 216, 231, 318, 438
MslI CAYNNNNRTG 2 cut(s) 543, 621
Mva1269I GAATGC 2 cut(s) 628, 678
NdeII GATC 8 cut(s) 3, 181, 241, 406, 454, 523, 781, 787
NlaIII CATG 3 cut(s) 530, 722, 788
NlaIV GGNNCC 3 cut(s) 190, 210, 288
NmeAIII GCCGAG 1 cut(s) 123
NspV TTCGAA 3 cut(s) 265, 493, 604
OliI CACNNNNGTG 1 cut(s) 543
PagI TCATGA 1 cut(s) 784
PaqCI CACCTGC 1 cut(s) 452
PceI AGGCCT 1 cut(s) 702
PctI GAATGC 2 cut(s) 628, 678
PfeI GAWTC 2 cut(s) 109, 853
PkrI GCNGC 4 cut(s) 173, 428, 875, 878
PleI GAGTC 1 cut(s) 733
PpsI GAGTC 1 cut(s) 733
PpuMI RGGWCCY 2 cut(s) 189, 287
Psp5II RGGWCCY 2 cut(s) 189, 287
PspN4I GGNNCC 3 cut(s) 190, 210, 288
PspPI GGNCC 3 cut(s) 189, 287, 821
PspPPI RGGWCCY 2 cut(s) 189, 287
PstI CTGCAG 1 cut(s) 881
RseI CAYNNNNRTG 2 cut(s) 543, 621
SaqAI TTAA 5 cut(s) 102, 216, 231, 318, 438
SatI GCNGC 4 cut(s) 172, 427, 874, 877
Sau3AI GATC 8 cut(s) 3, 181, 241, 406, 454, 523, 781, 787
Sau96I GGNCC 3 cut(s) 189, 287, 821
SchI GAGTC 1 cut(s) 734
SduI GDGCHC 1 cut(s) 550
SetI ASST 9 cut(s) 228, 337, 350, 435, 466, 562, 805, 834, 850
SfaNI GCATC 2 cut(s) 145, 674
SfcI CTRYAG 1 cut(s) 877
SfuI TTCGAA 3 cut(s) 265, 493, 604
SinI GGWCC 3 cut(s) 189, 287, 821
SmiMI CAYNNNNRTG 2 cut(s) 543, 621
SpeI ACTAGT 1 cut(s) 479
Sse9I AATT 8 cut(s) 79, 311, 325, 496, 643, 651, 733, 770
SseBI AGGCCT 1 cut(s) 702
SsiI CCGC 4 cut(s) 88, 171, 174, 206
SspI AATATT 3 cut(s) 250, 448, 610
SspMI CTAG 3 cut(s) 84, 162, 480
StuI AGGCCT 1 cut(s) 702
StyI CCWWGG 2 cut(s) 17, 192
TaaI ACNGT 2 cut(s) 152, 866
TaqI TCGA 8 cut(s) 253, 265, 366, 409, 493, 604, 649, 712
TasI AATT 8 cut(s) 79, 311, 325, 496, 643, 651, 733, 770
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 109, 853
Tru1I TTAA 5 cut(s) 102, 216, 231, 318, 438
Tru9I TTAA 5 cut(s) 102, 216, 231, 318, 438
TscAI CASTG 3 cut(s) 207, 550, 667
TseI GCWGC 3 cut(s) 426, 873, 876
TspDTI ATGAA 2 cut(s) 599, 603
TspRI CASTG 3 cut(s) 207, 550, 667
VpaK11BI GGWCC 3 cut(s) 189, 287, 821
XapI RAATTY 2 cut(s) 311, 651
XspI CTAG 3 cut(s) 84, 162, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.