Rorug07G0270900

52 kDa repressor of the inhibitor of the protein kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000122
Physical Location & Seq
Forward (+)
25595818 .. 25596210
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0270900.1

Sequence Viewer

Length: 393 bp
ATGCGGATGGGCACTGAATTTGGCACTGACGAGTTCAGTGCCTCTTTCAATTTGGACTATTTTCTCTCGATTGCGGAGTTTCTCGGCCTCGCGTCCTCCGCCATCTTCTCAATCAGTTTCAAATTGAGTTCGACGGTTCCGGGATCAAATGACACAACTATTCTAAGGAACAGGGTTTTGGGCGGCAGAGCACTGGCGGTGGGGATTGGGGCATGGATTCATAGGCGGTACTGGAGGAGGTTGAGCAGGGAGTCAGGTAAGGGTGGGATGGAGGTGAATTTTTTTGAGAGGATTGACAAGTTGGAAGAGGATTTGAGGAGCTCGGCTACAATTATTTGGGTTTTGTCAAGGCAGCTTGAGAAATTGGGGATAAGGTTTCGGGTTAACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

130

Amino Acids

14.73

Weight (kDa)

9.96

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 92
AciI CCGC 6 cut(s) 4, 74, 99, 183, 197, 226
AclWI GGATC 1 cut(s) 151
AcsI RAATTY 2 cut(s) 17, 277
AfaI GTAC 1 cut(s) 230
AgsI TTSAA 2 cut(s) 49, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 321, 355
AluI AGCT 2 cut(s) 321, 355
Alw21I GWGCWC 2 cut(s) 193, 323
AlwI GGATC 1 cut(s) 151
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 352
ApoI RAATTY 2 cut(s) 17, 277
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 323
Bbv12I GWGCWC 2 cut(s) 193, 323
BbvI GCAGC 1 cut(s) 364
BccI CCATC 2 cut(s) 110, 262
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BcnI CCSGG 1 cut(s) 141
BisI GCNGC 2 cut(s) 184, 353
BlsI GCNGC 2 cut(s) 185, 354
Bme1390I CCNGG 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 198, 236
BseGI GGATG 2 cut(s) 12, 273
BseNI ACTGG 2 cut(s) 198, 236
BseRI GAGGAG 2 cut(s) 250, 331
BseSI GKGCMC 1 cut(s) 14
BseXI GCAGC 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 87
BsiHKAI GWGCWC 2 cut(s) 193, 323
BsiSI CCGG 1 cut(s) 140
BsnI GGCC 1 cut(s) 87
Bsp1286I GDGCHC 3 cut(s) 14, 193, 323
Bsp143I GATC 1 cut(s) 143
BspACI CCGC 6 cut(s) 4, 74, 99, 183, 197, 226
BspANI GGCC 1 cut(s) 87
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 1 cut(s) 151
BsrI ACTGG 2 cut(s) 198, 236
BssMI GATC 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 2 cut(s) 12, 273
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 14
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 2 cut(s) 12, 273
BtsIMutI CAGTG 4 cut(s) 12, 24, 43, 191
CseI GACGC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 229
CviAII CATG 1 cut(s) 213
CviJI RGCY 4 cut(s) 87, 321, 326, 355
CviKI_1 RGCY 4 cut(s) 87, 321, 326, 355
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 164
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 323
FaeI CATG 1 cut(s) 216
FaiI YATR 3 cut(s) 214, 222, 391
FatI CATG 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 184, 353
FokI GGATG 2 cut(s) 19, 280
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 184, 353
GluI GCNGC 2 cut(s) 184, 353
GsuI CTGGAG 1 cut(s) 253
HaeIII GGCC 1 cut(s) 87
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 81
Hin1II CATG 1 cut(s) 216
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 2 cut(s) 217, 251
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 385
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 385
Hpy99I CGWCG 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 1 cut(s) 216
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 6 cut(s) 153, 157, 179, 217, 232, 240
Lsp1109I GCAGC 1 cut(s) 364
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 2 cut(s) 97, 317
MhlI GDGCHC 3 cut(s) 14, 193, 323
MluCI AATT 6 cut(s) 17, 49, 122, 277, 330, 362
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 9 cut(s) 52, 98, 106, 228, 231, 265, 282, 301, 309
MseI TTAA 1 cut(s) 384
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 98
NciI CCSGG 1 cut(s) 141
NdeII GATC 1 cut(s) 143
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 138
NmeAIII GCCGAG 2 cut(s) 63, 302
PfeI GAWTC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 2 cut(s) 185, 354
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp124BI GAGCTC 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 138
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SacI GAGCTC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 2 cut(s) 184, 353
Sau3AI GATC 1 cut(s) 143
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 3 cut(s) 14, 193, 323
SetI ASST 7 cut(s) 242, 259, 276, 323, 357, 377, 390
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 6 cut(s) 17, 49, 122, 277, 330, 362
SsiI CCGC 6 cut(s) 4, 74, 99, 183, 197, 226
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 68, 131
TasI AATT 6 cut(s) 17, 49, 122, 277, 330, 362
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 4 cut(s) 19, 31, 43, 198
TseI GCWGC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 4 cut(s) 19, 31, 43, 198
XapI RAATTY 2 cut(s) 17, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.