Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Reverse (-)

27455026 .. 27456146

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0261400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCAAAGATTTCAACTCTAACTGGGATGTTTCTGGTGCTATGGCTGGGAATGTCGGTCGTGACTTGGGCTGCCGAGGATGAGAATTCCGGTGGTGGCAGGCCACTAACTGAGGAGGAGATAGGGGCATGGATAAATGTTCTGCGGGGAGCCGAGACTGCTCTTGAAGCTGATAAATATCAAACAGCTAGTGCCATGGTTGCAGGAGTTGCTGCCAGGTTAGATGCTACAGATTTGCCTGACGATGTGAAAGAAGCCAAGCTTCAAGAAATGATGAAAGCAATTGAGCAGGCAGTCGAAGAAGATAATAAAGCCAAAGCTGTAGCTCTCATTAACGCAATTGCAGCGGAGTTCGAACACCAACACGGAAATGCGCGAGGAAGAGGAATTCTGCAGAGGCAGTTACACCAAACTGAAAATTTGCACAGCGTCCAGCCGTTGCTAGCCAGCCGTTTGAAAGATGCCTTCACAGCTATTGAAAGACAGGAAATAGCCAAAGCTCAACGGATTCTCCGCGATTTTTACCATCTTCTTAAGGATAATAAGGAATTATGTAAGGACAAAAAAACACTAATATTTCTTCATGCCATCCACCAAACTGAGCAGTATATTAAACAAGATGCAAGATCAAAAGCTGAACAGACTCTCCAAGGAGCTGCCTTCGCTCTTGGAGTTGGAGTTGAAAATCAGCTACAAGAAGGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

235

Amino Acids

26.01

Weight (kDa)

5.65

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	376, 516
AciI	CCGC	3 cut(s)	145, 347, 514
AcsI	RAATTY	3 cut(s)	85, 387, 418
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	6 cut(s)	15, 167, 266, 457, 479, 683
AjnI	CCWGG	1 cut(s)	215
AloI	GAACNNNNNNTCC	2 cut(s)	630, 662
Alw26I	GTCTC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	4 cut(s)	71, 212, 344, 656
ApoI	RAATTY	3 cut(s)	85, 387, 418
AspLEI	GCGC	1 cut(s)	376
AsuII	TTCGAA	1 cut(s)	354
AsuNHI	GCTAGC	1 cut(s)	442
BbvI	GCAGC	4 cut(s)	58, 199, 356, 643
BccI	CCATC	2 cut(s)	534, 596
BceAI	ACGGC	2 cut(s)	421, 435
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	2 cut(s)	189, 443
BfmI	CTRYAG	3 cut(s)	228, 321, 392
BfrI	CTTAAG	1 cut(s)	533
BisI	GCNGC	4 cut(s)	72, 213, 345, 657
BlsI	GCNGC	4 cut(s)	73, 214, 346, 658
Bme1390I	CCNGG	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	217
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	3 cut(s)	214, 451, 610
BmtI	GCTAGC	1 cut(s)	446
BmuI	ACTGGG	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	75, 195, 649
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	6 cut(s)	495, 525, 630, 660, 663, 693
Bse1I	ACTGG	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	75, 195, 649
BseGI	GGATG	3 cut(s)	33, 85, 588
BseJI	GATNNNNATC	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	102, 591
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	128, 131
BseXI	GCAGC	4 cut(s)	58, 199, 356, 643
BseYI	CCCAGC	1 cut(s)	46
Bsh1236I	CGCG	2 cut(s)	376, 516
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	103
Bsp119I	TTCGAA	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	626
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	3 cut(s)	145, 347, 514
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	2 cut(s)	103, 592
BspFNI	CGCG	2 cut(s)	376, 516
BspLI	GGNNCC	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	396
BspOI	GCTAGC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	354
BspTI	CTTAAG	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	75, 195, 649
BssMI	GATC	1 cut(s)	626
BssT1I	CCWWGG	2 cut(s)	195, 649
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	376
BstAFI	CTTAAG	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	354
BstC8I	GCNNGC	4 cut(s)	101, 291, 444, 448
BstDEI	CTNAG	2 cut(s)	111, 600
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	33, 85, 588
BstFNI	CGCG	2 cut(s)	376, 516
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	1 cut(s)	629
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	626
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	7 cut(s)	158, 167, 200, 209, 344, 470, 662
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstSFI	CTRYAG	3 cut(s)	228, 321, 392
BstUI	CGCG	2 cut(s)	376, 516
BstV1I	GCAGC	4 cut(s)	58, 199, 356, 643
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	33, 85, 588
Cac8I	GCNNGC	4 cut(s)	101, 291, 444, 448
CfoI	GCGC	1 cut(s)	376
CseI	GACGC	1 cut(s)	418
CviAII	CATG	3 cut(s)	129, 196, 584
DdeI	CTNAG	2 cut(s)	111, 600
DpnI	GATC	1 cut(s)	628
DpnII	GATC	1 cut(s)	626
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	195, 649
EcoRI	GAATTC	2 cut(s)	85, 387
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	195, 649
ErhI	CCWWGG	2 cut(s)	195, 649
FaeI	CATG	3 cut(s)	132, 199, 587
FaiI	YATR	6 cut(s)	43, 130, 197, 553, 585, 609
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	3 cut(s)	128, 195, 583
FauI	CCCGC	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	72, 213, 345, 657
FokI	GGATG	3 cut(s)	40, 92, 575
Fsp4HI	GCNGC	4 cut(s)	72, 213, 345, 657
FspBI	CTAG	2 cut(s)	189, 443
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	4 cut(s)	72, 213, 345, 657
GsaI	CCCAGC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	132, 199, 587
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	2 cut(s)	508, 643
HpaII	CCGG	1 cut(s)	90
Hpy188III	TCNNGA	3 cut(s)	61, 164, 266
HpyAV	CCTTC	3 cut(s)	475, 670, 692
HpyCH4V	TGCA	5 cut(s)	203, 344, 394, 424, 623
HpyF10VI	GCNNNNNNNGC	7 cut(s)	158, 167, 200, 209, 344, 470, 662
HpyF3I	CTNAG	2 cut(s)	111, 600
Hsp92II	CATG	3 cut(s)	132, 199, 587
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	1 cut(s)	626
LmnI	GCTCC	2 cut(s)	149, 653
Lsp1109I	GCAGC	4 cut(s)	58, 199, 356, 643
LweI	GCATC	3 cut(s)	214, 451, 610
MaeI	CTAG	2 cut(s)	189, 443
MaeIII	GTNAC	2 cut(s)	61, 402
MalI	GATC	1 cut(s)	628
MboI	GATC	1 cut(s)	626
MboII	GAAGA	5 cut(s)	311, 314, 393, 521, 572
MfeI	CAATTG	2 cut(s)	282, 339
MluCI	AATT	6 cut(s)	85, 282, 339, 387, 418, 548
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	6 cut(s)	70, 106, 109, 371, 377, 390
MseI	TTAA	4 cut(s)	333, 534, 612, 706
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	217
MunI	CAATTG	2 cut(s)	282, 339
MvaI	CCWGG	1 cut(s)	217
MvnI	CGCG	2 cut(s)	376, 516
MwoI	GCNNNNNNNGC	7 cut(s)	158, 167, 200, 209, 344, 470, 662
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	1 cut(s)	626
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	3 cut(s)	132, 199, 587
NlaIV	GGNNCC	1 cut(s)	151
NmeAIII	GCCGAG	2 cut(s)	100, 178
NmuCI	GTSAC	1 cut(s)	61
NspV	TTCGAA	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	508
PkrI	GCNGC	4 cut(s)	73, 214, 346, 658
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	4 cut(s)	333, 534, 612, 706
SatI	GCNGC	4 cut(s)	72, 213, 345, 657
Sau3AI	GATC	1 cut(s)	626
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	1 cut(s)	217
SfaNI	GCATC	3 cut(s)	214, 451, 610
SfcI	CTRYAG	3 cut(s)	228, 321, 392
SfuI	TTCGAA	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	6 cut(s)	85, 282, 339, 387, 418, 548
SsiI	CCGC	3 cut(s)	145, 347, 514
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	2 cut(s)	189, 443
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	195, 649
TaqI	TCGA	2 cut(s)	297, 354
TaqII	GACCGA	1 cut(s)	46
TasI	AATT	6 cut(s)	85, 282, 339, 387, 418, 548
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	4 cut(s)	333, 534, 612, 706
Tru9I	TTAA	4 cut(s)	333, 534, 612, 706
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	4 cut(s)	71, 212, 344, 656
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	290, 572
TspGWI	ACGGA	2 cut(s)	381, 520
Vha464I	CTTAAG	1 cut(s)	533
XapI	RAATTY	3 cut(s)	85, 387, 418
XspI	CTAG	2 cut(s)	189, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.