Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001942

Physical Location & Seq

Genomic Coordinates Reverse (-)

22186972 .. 22189304

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0136800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCTTGTCTCAGTTGCTGCGTCTCTTTTTCCATGACTGCTTCATTGAGGTCGGCCAACTATGCCTCTTTGGTGACTGATCAGCTATCTTTGGTGGAATTACACATGGCTGGACTAGGACTTCCTGATCTTGATGCATGGTACATGATTGAAACAATAGCTGAGAAGAACAACATTGGATACACACAATTTATAAAGCTGAGGGGGTTATTGTCGCATGTTCAACAACTACGAATTGGTTACTGGGGAATCAGTTCTTTCAAGGCCCAATCCATGTCTCATGGATTAGCATCTCCACGTTCAAAAGATGCTGCAGTTGAGAGTCAGCAACCTGCCGAGGCCTCCGGTGTTGGGAGGAGCTGGGTTCAGAGCATGTTCAGCAGGGATAATTCAACCAGATTAAACTCTTTCAGTCGTGTTCGCAGATGGACTTCTGATGGTGGCTCTCCAGCTACAAATGAAAATGGGACATCTCGTAAGCGAGAATTATCTGCAGCTGGACAGAAGAAAACCCAAACCAATGTTCGAGTACGTAGAGGCCATACTGGCCCTATCACTGCTCTACATTGTGTAACAAGGAGGGAAGTTTGGGATCTAGTGGGTGACCGTGAAGACGCAGGTTTCTTCATCAGTGGGAGCAGACTGCACGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

217

Amino Acids

23.87

Weight (kDa)

9.69

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001942)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005767.1_g000020
rosa_rugosa	Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_sc0005767.1_g000020

rosa_rugosa

Rorug01G0066000 Rorug02G0124200 Rorug02G0138200 Rorug02G0185600 Rorug02G0257700 Rorug02G0261400 Rorug02G0270200 Rorug02G0288300 Rorug02G0292400 Rorug03G0123000 Rorug03G0264500 Rorug03G0272400 Rorug03G0276800 Rorug03G0295500 Rorug03G0345600 Rorug03G0355500 Rorug03G0362800.1 Rorug04G0050800 Rorug04G0062200 Rorug04G0099000 Rorug04G0134600 Rorug04G0136800 Rorug04G0142900 Rorug05G0138800 Rorug05G0173900 Rorug05G0221000 Rorug05G0240700 Rorug05G0243200 Rorug05G0246000 Rorug05G0256000.1 Rorug05G0261900 Rorug05G0268700 Rorug05G0317800 Rorug05G0451600 Rorug05G0539600 Rorug05G0539900 Rorug06G0016600 Rorug06G0053900 Rorug06G0065100 Rorug06G0079600 Rorug06G0093200 Rorug06G0243100 Rorug07G0151000.1 Rorug07G0190200 Rorug07G0286200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
Acc36I	ACCTGC	2 cut(s)	340, 608
AclWI	GGATC	1 cut(s)	600
AcoI	YGGCCR	1 cut(s)	54
AfaI	GTAC	2 cut(s)	143, 531
AfiI	CCNNNNNNNGG	1 cut(s)	351
AgsI	TTSAA	5 cut(s)	152, 224, 262, 303, 393
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	6 cut(s)	85, 161, 199, 360, 452, 497
AluI	AGCT	6 cut(s)	85, 161, 199, 360, 452, 497
Alw26I	GTCTC	3 cut(s)	14, 28, 282
AlwI	GGATC	1 cut(s)	600
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	5 cut(s)	54, 264, 339, 538, 547
ApeKI	GCWGC	3 cut(s)	18, 311, 494
Asp700I	GAANNNNTTC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	265, 548
AsuHPI	GGTGA	2 cut(s)	85, 614
BbsI	GAAGAC	1 cut(s)	618
BbvCI	CCTCAGC	1 cut(s)	200
BbvI	GCAGC	3 cut(s)	5, 298, 506
BccI	CCATC	2 cut(s)	420, 431
BciVI	GTATCC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	3 cut(s)	14, 28, 282
BfaI	CTAG	2 cut(s)	116, 596
BfmI	CTRYAG	2 cut(s)	312, 492
BfuAI	ACCTGC	2 cut(s)	340, 608
BfuI	GTATCC	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	546
BisI	GCNGC	3 cut(s)	19, 312, 495
BlsI	GCNGC	3 cut(s)	20, 313, 496
BmgT120I	GGNCC	2 cut(s)	265, 548
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	3 cut(s)	124, 298, 299
BmuI	ACTGGG	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	618
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	248, 550
Bse8I	GATNNNNATC	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	336
BseJI	GATNNNNATC	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMII	CTCAG	3 cut(s)	25, 153, 191
BseNI	ACTGG	2 cut(s)	248, 550
BseRI	GAGGAG	1 cut(s)	370
BseXI	GCAGC	3 cut(s)	5, 298, 506
BseYI	CCCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	629
BshFI	GGCC	5 cut(s)	56, 266, 341, 540, 549
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	3 cut(s)	14, 28, 282
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	5 cut(s)	56, 266, 341, 540, 549
Bsp143I	GATC	3 cut(s)	79, 127, 592
BspANI	GGCC	5 cut(s)	56, 266, 341, 540, 549
BspCNI	CTCAG	3 cut(s)	24, 154, 192
BspMAI	CTGCAG	2 cut(s)	316, 496
BspMI	ACCTGC	2 cut(s)	340, 608
BspPI	GGATC	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	248, 550
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	3 cut(s)	79, 127, 592
Bst4CI	ACNGT	2 cut(s)	608, 650
BstBAI	YACGTR	1 cut(s)	533
BstDEI	CTNAG	3 cut(s)	11, 162, 200
BstEII	GGTNACC	1 cut(s)	602
BstKTI	GATC	3 cut(s)	82, 130, 595
BstMAI	GTCTC	3 cut(s)	14, 28, 282
BstMBI	GATC	3 cut(s)	79, 127, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 378, 546
BstNSI	RCATGY	2 cut(s)	221, 376
BstPI	GGTNACC	1 cut(s)	602
BstSFI	CTRYAG	2 cut(s)	312, 492
BstSNI	TACGTA	1 cut(s)	533
BstV1I	GCAGC	3 cut(s)	5, 298, 506
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	5 cut(s)	56, 266, 341, 540, 549
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	555, 637
BveI	ACCTGC	2 cut(s)	340, 608
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	265, 548
CseI	GACGC	2 cut(s)	10, 623
Csp6I	GTAC	2 cut(s)	142, 530
CviAII	CATG	8 cut(s)	34, 106, 138, 145, 218, 274, 281, 373
CviQI	GTAC	2 cut(s)	142, 530
DdeI	CTNAG	3 cut(s)	11, 162, 200
DpnI	GATC	3 cut(s)	81, 129, 594
DpnII	GATC	3 cut(s)	79, 127, 592
EaeI	YGGCCR	1 cut(s)	54
Eco105I	TACGTA	1 cut(s)	533
Eco147I	AGGCCT	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	602
EcoT22I	ATGCAT	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	8 cut(s)	37, 109, 141, 148, 221, 277, 284, 376
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	8 cut(s)	33, 105, 137, 144, 217, 273, 280, 372
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	19, 312, 495
Fsp4HI	GCNGC	3 cut(s)	19, 312, 495
FspBI	CTAG	2 cut(s)	116, 596
GluI	GCNGC	3 cut(s)	19, 312, 495
GsaI	CCCAGC	1 cut(s)	364
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	5 cut(s)	56, 266, 341, 540, 549
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	2 cut(s)	10, 623
Hin1II	CATG	8 cut(s)	37, 109, 141, 148, 221, 277, 284, 376
HinfI	GANTC	2 cut(s)	249, 322
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	85, 614
Hpy188I	TCNGA	2 cut(s)	369, 436
Hpy188III	TCNNGA	2 cut(s)	125, 131
HpyCH4III	ACNGT	2 cut(s)	608, 650
HpyCH4IV	ACGT	2 cut(s)	298, 532
HpyCH4V	TGCA	4 cut(s)	137, 314, 494, 646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 378, 546
HpyF3I	CTNAG	3 cut(s)	11, 162, 200
HpySE526I	ACGT	2 cut(s)	298, 532
Hsp92II	CATG	8 cut(s)	37, 109, 141, 148, 221, 277, 284, 376
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	79, 127, 592
LmnI	GCTCC	2 cut(s)	357, 636
Lsp1109I	GCAGC	3 cut(s)	5, 298, 506
LweI	GCATC	3 cut(s)	124, 298, 299
MaeI	CTAG	2 cut(s)	116, 596
MaeII	ACGT	2 cut(s)	298, 532
MaeIII	GTNAC	4 cut(s)	73, 239, 571, 602
MalI	GATC	3 cut(s)	81, 129, 594
MboI	GATC	3 cut(s)	79, 127, 592
MboII	GAAGA	4 cut(s)	178, 517, 616, 623
MflI	RGATCY	1 cut(s)	592
MluCI	AATT	5 cut(s)	98, 188, 234, 388, 485
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	8 cut(s)	42, 76, 195, 331, 348, 352, 530, 573
Mph1103I	ATGCAT	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	253
MseI	TTAA	2 cut(s)	401, 652
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	62, 378, 546
NdeII	GATC	3 cut(s)	79, 127, 592
NlaIII	CATG	8 cut(s)	37, 109, 141, 148, 221, 277, 284, 376
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	2 cut(s)	73, 602
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	2 cut(s)	221, 376
PceI	AGGCCT	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	20, 313, 496
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
Ppu21I	YACGTR	1 cut(s)	533
PsiI	TTATAA	1 cut(s)	194
PspEI	GGTNACC	1 cut(s)	602
PspFI	CCCAGC	1 cut(s)	360
PspPI	GGNCC	2 cut(s)	265, 548
PstI	CTGCAG	2 cut(s)	316, 496
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	2 cut(s)	143, 531
RsaNI	GTAC	2 cut(s)	142, 530
SaqAI	TTAA	2 cut(s)	401, 652
SatI	GCNGC	3 cut(s)	19, 312, 495
Sau3AI	GATC	3 cut(s)	79, 127, 592
Sau96I	GGNCC	2 cut(s)	265, 548
SchI	GAGTC	1 cut(s)	331
SfaNI	GCATC	3 cut(s)	124, 298, 299
SfcI	CTRYAG	2 cut(s)	312, 492
SfiI	GGCCNNNNNGGCC	1 cut(s)	546
SnaBI	TACGTA	1 cut(s)	533
Sse9I	AATT	5 cut(s)	98, 188, 234, 388, 485
SseBI	AGGCCT	1 cut(s)	341
SspMI	CTAG	2 cut(s)	116, 596
StuI	AGGCCT	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	608, 650
TaiI	ACGT	2 cut(s)	301, 535
TaqI	TCGA	1 cut(s)	526
TasI	AATT	5 cut(s)	98, 188, 234, 388, 485
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	2 cut(s)	401, 652
Tru9I	TTAA	2 cut(s)	401, 652
TscAI	CASTG	2 cut(s)	562, 637
TseFI	GTSAC	2 cut(s)	73, 602
TseI	GCWGC	3 cut(s)	18, 311, 494
Tsp45I	GTSAC	2 cut(s)	73, 602
TspDTI	ATGAA	3 cut(s)	33, 474, 616
TspRI	CASTG	2 cut(s)	562, 637
XceI	RCATGY	2 cut(s)	221, 376
XmnI	GAANNNNTTC	1 cut(s)	253
XspI	CTAG	2 cut(s)	116, 596
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.