Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002332

Physical Location & Seq

Genomic Coordinates Reverse (-)

17507386 .. 17510997

Gene Structure 3612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1197100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTGAATCAGCCTTTGTTGTTTCCGCCGGGTACTCTCACTTTTGTGGTGAAGAACAAGAAAGAGTCCTTCAAGATTGAAGAAGGAGATGTGATTAGAGTTCCAGGTGGGGCTACCACCTACTTAATTAACGATCATAGTAGTGAACATCTAGGCCTTGTTCAGCTCATTCGGCCAGTCAACATACCTGACCTATTTGAGACCCCAAGAGAGCAGTTAGAGAAGGCCTTAGGACAGCAGAGGCCGGAGGGAATGATTATAAAAGCCTCAAAAGAGCAACTCAAGGCATTGAGTAAACAAGATACATCATGGTGGCGCAAACCAGTCCCTTGGTGGTCGTCTGAGGACACTGATTTAAAATTCAACCTGCAAAGCCAGAAGCCTCTGCATTCCAATAACTATGGCAAGTTCTATGAGGCTTCCCCTCAGGAGTTCAAGCAGCTTCTGGACGTGAATGTCTCAGTCGTTATCGTTGAGATCAACTCGGAAACTATGATGGTGCCACACTACAATTCCAAAGCAACATATTTGATGATGGTGGTAAGTGGAACGGGATGGTTTGAAATGGCATCCCCACAGTTCACACTCCCAGAGAGTGAAGAAGAGATTGAGTACCAAGAAGACCAGGGTGAACAGAGTGGAATGTACACCAAGTTGAGTGGAAAACTATCACTCGGTGATGTCTTTGTGGTTCCAGCAGGTCGTCCTGTTGTTTTTGTTTCCCGAAACAATGATGAGGGCAACAACCAAAATCAGAATCTGAGAATTGTGGGATTCGGAATCAATGCCCCAAACAACATTAGGAACTTCCTTGCAGGTAAACGAGTCGATTCAGACACAACATTACTTGGGTGCCAAGAGGACAACATAATGAAGATGATGGAAAGTGAGGCTAAGCAGCTGACATTTGCGAAAGAAATGGAACAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0030312 GO:0031410 GO:0031982 GO:0033095 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 Vicilin_N

Protein Analysis

311

Amino Acids

35.16

Weight (kDa)

5.08

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	121 - 272	1.3e-20	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22640
fragaria_vesca	FvH4_2g23190 FvH4_4g15931 FvH4_4g15931
malus_domestica	MD03G1261200.v1.1 MD11G1140200.v1.1 MD11G1281600.v1.1 MD13G1196800.v1.1 MD16G1197100.v1.1 MD16G1197200.v1.1
prunus_persica	Prupe.1G017700_v2.0.a1 Prupe.1G018000_v2.0.a1 Prupe.8G237500_v2.0.a1
pyrus_communis	pycom09g17330 pycom11g24970 pycom13g16920 pycom13g16930 pycom16g16590 pycom16g16620
rosa_chinensis	RchiOBHm_Chr4g0415511 RchiOBHm_Chr6g0290441
rosa_laevigata	RLG00000008067 RLG00000012215
rosa_multiflora	Rmu_sc0002890.1_g000006 Rmu_sc0007265.1_g000001 Rmu_sc0007625.1_g000002 Rmu_sc0020894.1_g000005 Rmu_sc0020894.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359290 Rroxscaffold_7G00177060
rosa_rugosa	Rorug04G0134600 Rorug06G0212700
rosa_samantha	Rh4AG195500 Rh4BG194300 Rh4CG206400 Rh4DG193300 Rh6AG322900 Rh6BG330300 Rh6CG336400 Rh6DG323300
rosa_wichuraiana	Rw4G016650 Rw6G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc36I	ACCTGC	3 cut(s)	375, 689, 806
AccB1I	GGYRCC	2 cut(s)	499, 852
AciI	CCGC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	359
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	3 cut(s)	34, 614, 647
AgsI	TTSAA	5 cut(s)	73, 80, 364, 436, 563
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	103, 624
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	166, 442, 901
AluI	AGCT	3 cut(s)	166, 442, 901
Alw26I	GTCTC	2 cut(s)	194, 463
AlwNI	CAGNNNCTG	2 cut(s)	445, 760
AoxI	GGCC	4 cut(s)	154, 173, 225, 242
ApeKI	GCWGC	2 cut(s)	439, 898
ApoI	RAATTY	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	318
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	3 cut(s)	61, 641, 689
AxyI	CCTNAGG	2 cut(s)	229, 426
BanI	GGYRCC	2 cut(s)	499, 852
BbsI	GAAGAC	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	451, 910
BccI	CCATC	4 cut(s)	490, 529, 549, 874
BciT130I	CCWGG	2 cut(s)	105, 626
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	194, 463
BfaI	CTAG	1 cut(s)	152
BfuAI	ACCTGC	3 cut(s)	375, 689, 806
BisI	GCNGC	2 cut(s)	440, 899
BlpI	GCTNAGC	1 cut(s)	894
BlsI	GCNGC	2 cut(s)	441, 900
Bme1390I	CCNGG	3 cut(s)	30, 105, 626
BmgBI	CACGTC	1 cut(s)	451
BmiI	GGNNCC	3 cut(s)	501, 693, 854
BmrFI	CCNGG	3 cut(s)	30, 105, 626
BmsI	GCATC	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	627
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
Bpu1102I	GCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	329, 625
Bse1I	ACTGG	2 cut(s)	176, 323
Bse21I	CCTNAGG	2 cut(s)	229, 426
BseBI	CCWGG	2 cut(s)	105, 626
BseDI	CCNNGG	2 cut(s)	329, 625
BseGI	GGATG	2 cut(s)	560, 569
BseMII	CTCAG	4 cut(s)	333, 440, 474, 752
BseNI	ACTGG	2 cut(s)	176, 323
BseXI	GCAGC	2 cut(s)	451, 910
BshFI	GGCC	4 cut(s)	156, 175, 227, 244
BshNI	GGYRCC	2 cut(s)	499, 852
BsiSI	CCGG	2 cut(s)	29, 245
BslFI	GGGAC	1 cut(s)	311
BsmAI	GTCTC	2 cut(s)	194, 463
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	4 cut(s)	156, 175, 227, 244
Bso31I	GGTCTC	1 cut(s)	194
Bsp1407I	TGTACA	1 cut(s)	645
Bsp143I	GATC	2 cut(s)	133, 477
Bsp1720I	GCTNAGC	1 cut(s)	894
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	4 cut(s)	156, 175, 227, 244
BspCNI	CTCAG	4 cut(s)	334, 439, 473, 753
BspLI	GGNNCC	3 cut(s)	501, 693, 854
BspMI	ACCTGC	3 cut(s)	375, 689, 806
BspT107I	GGYRCC	2 cut(s)	499, 852
BspTNI	GGTCTC	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	176, 323
BssECI	CCNNGG	2 cut(s)	329, 625
BssMI	GATC	2 cut(s)	133, 477
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	2 cut(s)	105, 626
Bst4CI	ACNGT	2 cut(s)	579, 927
Bst6I	CTCTTC	1 cut(s)	597
BstAUI	TGTACA	1 cut(s)	645
BstDEI	CTNAG	6 cut(s)	229, 342, 426, 460, 761, 894
BstF5I	GGATG	2 cut(s)	560, 569
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	2 cut(s)	136, 480
BstMAI	GTCTC	2 cut(s)	194, 463
BstMBI	GATC	2 cut(s)	133, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 172
BstNI	CCWGG	2 cut(s)	105, 626
BstSCI	CCNGG	3 cut(s)	28, 103, 624
BstV1I	GCAGC	2 cut(s)	451, 910
BstV2I	GAAGAC	1 cut(s)	627
BstXI	CCANNNNNNTGG	1 cut(s)	330
Bsu36I	CCTNAGG	2 cut(s)	229, 426
BsuRI	GGCC	4 cut(s)	156, 175, 227, 244
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	2 cut(s)	560, 569
BtsIMutI	CAGTG	1 cut(s)	348
BveI	ACCTGC	3 cut(s)	375, 689, 806
CaiI	CAGNNNCTG	2 cut(s)	445, 760
CfoI	GCGC	1 cut(s)	318
Csp6I	GTAC	3 cut(s)	33, 613, 646
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	1 cut(s)	309
CviQI	GTAC	3 cut(s)	33, 613, 646
DdeI	CTNAG	6 cut(s)	229, 342, 426, 460, 761, 894
DpnI	GATC	2 cut(s)	135, 479
DpnII	GATC	2 cut(s)	133, 477
DraI	TTTAAA	1 cut(s)	357
DraIII	CACNNNGTG	1 cut(s)	677
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
EciI	GGCGGA	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	329
Eco147I	AGGCCT	2 cut(s)	156, 227
Eco31I	GGTCTC	1 cut(s)	194
Eco81I	CCTNAGG	2 cut(s)	229, 426
EcoRII	CCWGG	2 cut(s)	103, 624
EcoT14I	CCWWGG	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	1 cut(s)	312
FaiI	YATR	9 cut(s)	138, 185, 260, 310, 402, 414, 494, 526, 869
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	440, 899
FokI	GGATG	2 cut(s)	556, 567
Fsp4HI	GCNGC	2 cut(s)	440, 899
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	2 cut(s)	440, 899
HaeIII	GGCC	4 cut(s)	156, 175, 227, 244
HapII	CCGG	2 cut(s)	29, 245
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	7 cut(s)	7, 65, 757, 774, 780, 825, 830
HpaII	CCGG	2 cut(s)	29, 245
HphI	GGTGA	3 cut(s)	61, 641, 689
Hpy166II	GTNNAC	7 cut(s)	146, 181, 296, 582, 632, 648, 821
Hpy188I	TCNGA	6 cut(s)	343, 487, 756, 762, 779, 835
Hpy188III	TCNNGA	4 cut(s)	73, 428, 446, 723
Hpy8I	GTNNAC	7 cut(s)	146, 181, 296, 582, 632, 648, 821
HpyAV	CCTTC	3 cut(s)	77, 79, 217
HpyCH4III	ACNGT	2 cut(s)	579, 927
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	370, 388, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 172
HpyF3I	CTNAG	6 cut(s)	229, 342, 426, 460, 761, 894
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	312
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	133, 477
Lsp1109I	GCAGC	2 cut(s)	451, 910
LweI	GCATC	1 cut(s)	578
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	450
MalI	GATC	2 cut(s)	135, 479
MboI	GATC	2 cut(s)	133, 477
MboII	GAAGA	6 cut(s)	64, 92, 611, 614, 632, 886
MluCI	AATT	4 cut(s)	126, 359, 511, 765
MlyI	GAGTC	2 cut(s)	74, 834
MseI	TTAA	3 cut(s)	125, 129, 356
MslI	CAYNNNNRTG	3 cut(s)	44, 141, 310
MspA1I	CMGCKG	1 cut(s)	901
MspI	CCGG	2 cut(s)	29, 245
MspR9I	CCNGG	3 cut(s)	30, 105, 626
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	2 cut(s)	105, 626
MwoI	GCNNNNNNNGC	2 cut(s)	10, 172
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	133, 477
NlaIII	CATG	1 cut(s)	312
NlaIV	GGNNCC	3 cut(s)	501, 693, 854
OliI	CACNNNNGTG	1 cut(s)	44
PacI	TTAATTAA	1 cut(s)	129
PceI	AGGCCT	2 cut(s)	156, 227
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	5 cut(s)	7, 757, 774, 780, 830
PkrI	GCNGC	2 cut(s)	441, 900
PleI	GAGTC	2 cut(s)	73, 833
PpsI	GAGTC	2 cut(s)	73, 833
PsiI	TTATAA	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	103, 624
PspGI	CCWGG	2 cut(s)	103, 624
PspN4I	GGNNCC	3 cut(s)	501, 693, 854
PstNI	CAGNNNCTG	2 cut(s)	445, 760
PvuII	CAGCTG	1 cut(s)	901
RsaI	GTAC	3 cut(s)	34, 614, 647
RsaNI	GTAC	3 cut(s)	33, 613, 646
RseI	CAYNNNNRTG	3 cut(s)	44, 141, 310
SaqAI	TTAA	3 cut(s)	125, 129, 356
SatI	GCNGC	2 cut(s)	440, 899
Sau3AI	GATC	2 cut(s)	133, 477
SchI	GAGTC	2 cut(s)	74, 834
ScrFI	CCNGG	3 cut(s)	30, 105, 626
SfaNI	GCATC	1 cut(s)	578
SmiMI	CAYNNNNRTG	3 cut(s)	44, 141, 310
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	4 cut(s)	126, 359, 511, 765
SseBI	AGGCCT	2 cut(s)	156, 227
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	152
StuI	AGGCCT	2 cut(s)	156, 227
StyD4I	CCNGG	3 cut(s)	28, 103, 624
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	2 cut(s)	579, 927
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	1 cut(s)	828
TasI	AATT	4 cut(s)	126, 359, 511, 765
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	5 cut(s)	7, 757, 774, 780, 830
Tru1I	TTAA	3 cut(s)	125, 129, 356
Tru9I	TTAA	3 cut(s)	125, 129, 356
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	2 cut(s)	439, 898
TspDTI	ATGAA	1 cut(s)	887
TspRI	CASTG	1 cut(s)	355
XapI	RAATTY	1 cut(s)	359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.