Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002332

Physical Location & Seq

Genomic Coordinates Reverse (-)

12651047 .. 12652436

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGAGCCCCAAAGGAGCAACTTGAGGCATTGAGTCAACGTCCTTCTTCAGCCAGGCGTGAAGGACGCCGACAGTCTCAGGGTCCGTTCAATCTGAGACAACAAACACCTGTGCACTCCAACAACTATGGCCAGTTCTTTGAGGCTCGCCCTGAAGAATTCAATCAGTTCCAGGACATGGATGTCTCAGTCAGTTGCATAGAGATGAACCAACAAACTATGATGGTGCCACACTTTAATTCGGAAGCTACATTCTTGATGTACGTTGTGGAAGGAAATGTACGTGTCGAAATGGCGTGCCCCCACTTGGCAAGCCAAATGCAAGGCCAAGAGATGATGGAACAACAAGAGCAGGGAGAGCACAGTGGAAGTTTCACGAAGGTCGCTGCTCAGCTGTCACCTGGTGATGCTTTCGTTGTCCCAGCTGGTCATCCTGTTGCCTTTGTTGCCCAGAACAACAATGGCAACCAAAACCAGAACATCCGAATCCTGGGATTCGGACTCAATGCCCAAAACAACATGAGGAACTTCCTTGCAGGGCAAAAGGATAACATAATGCAGCAGATGGATAGGGAGGCTAAGCAGCTAGCATTTGGGCAAGAGATGGAAAGAATCTTTGGCGAGCAGCAGGAATCTTACTTTGTGCCAACTAAGAAGGGAAGAGGGAGAAGCCATCCGTTGTCTTCAACTTTGGAGTTTGCTGGCGTAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0030312 GO:0031410 GO:0031982 GO:0033095 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 Vicilin_N

Protein Analysis

238

Amino Acids

26.76

Weight (kDa)

5.89

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22640
fragaria_vesca	FvH4_2g23190 FvH4_4g15931 FvH4_4g15931
malus_domestica	MD03G1261200.v1.1 MD11G1140200.v1.1 MD11G1281600.v1.1 MD13G1196800.v1.1 MD16G1197100.v1.1 MD16G1197200.v1.1
prunus_persica	Prupe.1G017700_v2.0.a1 Prupe.1G018000_v2.0.a1 Prupe.8G237500_v2.0.a1
pyrus_communis	pycom09g17330 pycom11g24970 pycom13g16920 pycom13g16930 pycom16g16590 pycom16g16620
rosa_chinensis	RchiOBHm_Chr4g0415511 RchiOBHm_Chr6g0290441
rosa_laevigata	RLG00000008067 RLG00000012215
rosa_multiflora	Rmu_sc0002890.1_g000006 Rmu_sc0007265.1_g000001 Rmu_sc0007625.1_g000002 Rmu_sc0020894.1_g000005 Rmu_sc0020894.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359290 Rroxscaffold_7G00177060
rosa_rugosa	Rorug04G0134600 Rorug06G0212700
rosa_samantha	Rh4AG195500 Rh4BG194300 Rh4CG206400 Rh4DG193300 Rh6AG322900 Rh6BG330300 Rh6CG336400 Rh6DG323300
rosa_wichuraiana	Rw4G016650 Rw6G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	2 cut(s)	33, 174
AcyI	GRCGYC	1 cut(s)	67
AdeI	CACNNNGTG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	263, 282
AfiI	CCNNNNNNNGG	3 cut(s)	178, 307, 490
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	91, 163, 687
AjnI	CCWGG	4 cut(s)	53, 171, 400, 489
AjuI	GAANNNNNNNTTGG	2 cut(s)	600, 632
AluBI	AGCT	4 cut(s)	248, 394, 425, 586
AluI	AGCT	4 cut(s)	248, 394, 425, 586
Alw21I	GWGCWC	2 cut(s)	117, 363
Alw26I	GTCTC	3 cut(s)	81, 91, 190
Alw44I	GTGCAC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	130, 325
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	4 cut(s)	386, 559, 583, 625
ApoI	RAATTY	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	390, 416
AsuNHI	GCTAGC	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	83
BaeGI	GKGCMC	2 cut(s)	117, 302
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	10
BarI	GAAGNNNNNNTAC	2 cut(s)	264, 296
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	2 cut(s)	117, 363
BbvI	GCAGC	4 cut(s)	373, 571, 595, 637
BccI	CCATC	5 cut(s)	217, 331, 559, 598, 681
BciT130I	CCWGG	4 cut(s)	55, 173, 402, 491
BcoDI	GTCTC	3 cut(s)	81, 91, 190
BfaI	CTAG	1 cut(s)	587
BisI	GCNGC	4 cut(s)	387, 560, 584, 626
BlpI	GCTNAGC	2 cut(s)	390, 579
BlsI	GCNGC	4 cut(s)	388, 561, 585, 627
Bme1390I	CCNGG	4 cut(s)	55, 173, 402, 491
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	84, 228
BmrFI	CCNGG	4 cut(s)	55, 173, 402, 491
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	590
BpiI	GAAGAC	1 cut(s)	675
Bpu1102I	GCTNAGC	2 cut(s)	390, 579
BpuEI	CTTGAG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 307, 490
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	4 cut(s)	55, 173, 402, 491
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	4 cut(s)	187, 430, 480, 673
BseLI	CCNNNNNNNGG	3 cut(s)	178, 307, 490
BseMII	CTCAG	4 cut(s)	86, 92, 201, 404
BseNI	ACTGG	1 cut(s)	133
BseSI	GKGCMC	2 cut(s)	117, 302
BseXI	GCAGC	4 cut(s)	373, 571, 595, 637
BseYI	CCCAGC	1 cut(s)	421
BshFI	GGCC	2 cut(s)	132, 327
BshNI	GGYRCC	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	117, 363
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	3 cut(s)	178, 307, 490
BsmAI	GTCTC	3 cut(s)	81, 91, 190
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	132, 327
Bsp1286I	GDGCHC	4 cut(s)	10, 117, 302, 363
Bsp1720I	GCTNAGC	2 cut(s)	390, 579
BspANI	GGCC	2 cut(s)	132, 327
BspCNI	CTCAG	4 cut(s)	87, 91, 200, 403
BspLI	GGNNCC	2 cut(s)	84, 228
BspOI	GCTAGC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	490
BssNI	GRCGYC	1 cut(s)	67
Bst2UI	CCWGG	4 cut(s)	55, 173, 402, 491
Bst4CI	ACNGT	2 cut(s)	75, 365
Bst6I	CTCTTC	1 cut(s)	655
BstACI	GRCGYC	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	6 cut(s)	148, 298, 313, 588, 623, 703
BstDEI	CTNAG	6 cut(s)	78, 95, 187, 390, 579, 651
BstF5I	GGATG	4 cut(s)	187, 430, 480, 673
BstMAI	GTCTC	3 cut(s)	81, 91, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 446
BstNI	CCWGG	4 cut(s)	55, 173, 402, 491
BstSCI	CCNGG	4 cut(s)	53, 171, 400, 489
BstSLI	GKGCMC	2 cut(s)	117, 302
BstV1I	GCAGC	4 cut(s)	373, 571, 595, 637
BstV2I	GAAGAC	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	132, 327
BtsCI	GGATG	4 cut(s)	187, 430, 480, 673
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	6 cut(s)	148, 298, 313, 588, 623, 703
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	1 cut(s)	75
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	262, 281
CviAII	CATG	2 cut(s)	178, 520
CviQI	GTAC	2 cut(s)	262, 281
DdeI	CTNAG	6 cut(s)	78, 95, 187, 390, 579, 651
DraIII	CACNNNGTG	1 cut(s)	404
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	655
EarI	CTCTTC	1 cut(s)	655
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	2 cut(s)	33, 174
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	4 cut(s)	53, 171, 400, 489
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	2 cut(s)	181, 523
FaiI	YATR	6 cut(s)	129, 179, 200, 221, 521, 554
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	2 cut(s)	177, 519
Fnu4HI	GCNGC	4 cut(s)	387, 560, 584, 626
FokI	GGATG	4 cut(s)	194, 417, 467, 660
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	4 cut(s)	387, 560, 584, 626
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	4 cut(s)	387, 560, 584, 626
GsaI	CCCAGC	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	132, 327
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	181, 523
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HinfI	GANTC	6 cut(s)	34, 486, 495, 501, 612, 632
HphI	GGTGA	2 cut(s)	390, 416
Hpy166II	GTNNAC	2 cut(s)	38, 115
Hpy188I	TCNGA	4 cut(s)	96, 244, 485, 500
Hpy188III	TCNNGA	2 cut(s)	256, 376
Hpy8I	GTNNAC	2 cut(s)	38, 115
HpyAV	CCTTC	5 cut(s)	54, 56, 266, 373, 649
HpyCH4III	ACNGT	2 cut(s)	75, 365
HpyCH4IV	ACGT	3 cut(s)	40, 264, 283
HpyCH4V	TGCA	5 cut(s)	115, 198, 322, 536, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 446
HpyF3I	CTNAG	6 cut(s)	78, 95, 187, 390, 579, 651
HpySE526I	ACGT	3 cut(s)	40, 264, 283
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	181, 523
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	4 cut(s)	373, 571, 595, 637
LweI	GCATC	1 cut(s)	397
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	3 cut(s)	40, 264, 283
MaeIII	GTNAC	1 cut(s)	396
MboII	GAAGA	4 cut(s)	39, 167, 672, 675
MhlI	GDGCHC	4 cut(s)	10, 117, 302, 363
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	2 cut(s)	158, 238
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	43, 495
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	5 cut(s)	19, 136, 516, 568, 656
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	2 cut(s)	394, 425
MspR9I	CCNGG	4 cut(s)	55, 173, 402, 491
MvaI	CCWGG	4 cut(s)	55, 173, 402, 491
MwoI	GCNNNNNNNGC	2 cut(s)	358, 446
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	2 cut(s)	181, 523
NlaIV	GGNNCC	2 cut(s)	84, 228
NmuCI	GTSAC	1 cut(s)	396
PfeI	GAWTC	4 cut(s)	486, 495, 612, 632
PflMI	CCANNNNNTGG	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	4 cut(s)	388, 561, 585, 627
PleI	GAGTC	2 cut(s)	42, 495
PpsI	GAGTC	2 cut(s)	42, 495
Ppu21I	YACGTR	1 cut(s)	284
Psp6I	CCWGG	4 cut(s)	53, 171, 400, 489
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	4 cut(s)	53, 171, 400, 489
PspN4I	GGNNCC	2 cut(s)	84, 228
PspPI	GGNCC	1 cut(s)	83
PvuII	CAGCTG	2 cut(s)	394, 425
RsaI	GTAC	2 cut(s)	263, 282
RsaNI	GTAC	2 cut(s)	262, 281
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	4 cut(s)	387, 560, 584, 626
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	2 cut(s)	43, 495
ScrFI	CCNGG	4 cut(s)	55, 173, 402, 491
SduI	GDGCHC	4 cut(s)	10, 117, 302, 363
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	158, 238
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	4 cut(s)	53, 171, 400, 489
TaaI	ACNGT	2 cut(s)	75, 365
TaiI	ACGT	3 cut(s)	43, 267, 286
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	158, 238
TfiI	GAWTC	4 cut(s)	486, 495, 612, 632
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	396
TseI	GCWGC	4 cut(s)	386, 559, 583, 625
Tsp45I	GTSAC	1 cut(s)	396
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	2 cut(s)	75, 666
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.