AT3G22640

Cupin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
8011724 .. 8013941
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22640.1

Sequence Viewer

Length: 1461 bp
ATGGCAATAACCAACAAATTAATCATAACACTTCTTCTCCTTATCTCCATAGCTGTCGTCCACTGCTTATCCTTCCGTGTGGAGATCGACGAGTTCGAGCCACCACAGCAAGGAGAACAAGAAGGTCCCCGTCGCCGTCCTGGTGGTGGCTCTGGCGAGGGATGGGAGGAAGAGTCGACGAATCATCCATACCACTTCAGGAAGCGGAGTTTCAGTGATTGGTTCCAGTCAAAGGAAGGTTTTGTGAGAGTGCTGCCTAAGTTCACAAAACATGCACCGGCTCTCTTCCGAGGAATCGAGAACTACAGATTCTCGTTGGTGGAGATGGAGCCAACAACTTTCTTTGTGCCTCACCATTTGGATGCCGATGCTGTTTTTATAGTCCTACAAGGTAAAGGAGTGATCGAGTTTGTGACGGATAAAACAAAAGAATCGTTCCACATAACTAAAGGTGATGTGGTAAGAATCCCTTCTGGTGTCACCAACTTTATCACCAACACTAACCAGACGGTTCCTCTCCGCCTCGCCCAGATCACCGTCCCTGTCAACAATCCCGGCAACTACAAGGATTACTTCCCTGCTGCATCCCAATTTCAGCAATCCTACTTCAATGGGTTTACCAAAGAAGTCCTCTCTACCAGTTTCAACGTGCCGGAAGAATTGCTAGGGAGATTGGTTACGAGATCAAAAGAAATTGGTCAAGGGATTATCCGAAGAATTTCTCCAGACCAAATCAAGGAACTTGCTGAGCACGCTACATCTCCTTCAAACAAACACAAAGCCAAAAAAGAAAAGGAGGAAGACAAAGACCTAAGAACGTTGTGGACTCCTTTCAATCTCTTTGCAATAGATCCAATCTACTCCAACGACTTTGGTCATTTCCACGAGGCACATCCTAAGAATTATAATCAACTGCAAGACCTTCACATAGCCGCCGCTTGGGCTAACATGACACAGGGATCCTTGTTCCTTCCTCATTTTAACTCTAAGACCACATTTGTAACGTTTGTGGAGAATGGTTGTGCCCGCTTCGAGATGGCTACTCCTTATAAATTCCAAAGAGGGCAACAACAATGGCCAGGACAAGGACAAGAAGAAGAAGAAGATATGAGTGAAAACGTACACAAAGTTGTGTCACGAGTGTGTAAAGGCGAAGTTTTTATCGTTCCGGCAGGTCATCCATTCACTATACTCTCGCAAGATCAAGACTTTATCGCGGTAGGGTTTGGTATTTATGCGACCAACAGCAAAAGAACGTTCCTTGCAGGGGAAGAGAATTTGCTGAGCAACCTCAACCCGGCGGCAACTAGGGTAACCTTTGGTGTTGGAAGTAAAGTCGCGGAGAAACTGTTCACGAGCCAAAACTATTCCTACTTTGCACCTACGAGTCGTAGCCAACAACAAATTCCAGAGAAACACAAGCCATCGTTTCAATCAATCTTAGACTTTGCTGGTTTTTGA

Protein Analysis

486

Amino Acids

55.06

Weight (kDa)

6.64

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 106 - 218 2.9e-09 Cupin
Cupin_1 PF00190 278 - 446 6.1e-27 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 906, 1050
Acc36I ACCTGC 1 cut(s) 1163
AccI GTMKAC 1 cut(s) 176
AccII CGCG 2 cut(s) 1217, 1340
AciI CCGC 8 cut(s) 205, 520, 933, 936, 1027, 1217, 1301, 1340
AclI AACGTT 3 cut(s) 818, 1004, 1256
AclWI GGATC 3 cut(s) 845, 954, 967
AcoI YGGCCR 1 cut(s) 1076
AcsI RAATTY 4 cut(s) 717, 1052, 1276, 1404
AcuI CTGAAG 1 cut(s) 181
AfaI GTAC 1 cut(s) 1122
AfiI CCNNNNNNNGG 8 cut(s) 110, 146, 232, 736, 939, 1085, 1267, 1297
AgsI TTSAA 5 cut(s) 610, 646, 768, 835, 1433
AjnI CCWGG 2 cut(s) 139, 1078
AjuI GAANNNNNNNTTGG 2 cut(s) 1389, 1421
AleI CACNNNNGTG 1 cut(s) 1141
AloI GAACNNNNNNTCC 2 cut(s) 1334, 1366
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 753
AlwI GGATC 3 cut(s) 845, 954, 967
AoxI GGCC 1 cut(s) 1076
ApeKI GCWGC 2 cut(s) 253, 581
ApoI RAATTY 4 cut(s) 717, 1052, 1276, 1404
AseI ATTAAT 1 cut(s) 20
Asp700I GAANNNNTTC 3 cut(s) 469, 718, 1349
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 555, 1298
AsuHPI GGTGA 5 cut(s) 344, 464, 472, 484, 526
AvaII GGWCC 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 1027
BalI TGGCCA 1 cut(s) 1078
BamHI GGATCC 1 cut(s) 959
BauI CACGAG 3 cut(s) 884, 1137, 1354
BbsI GAAGAC 1 cut(s) 807
Bbv12I GWGCWC 1 cut(s) 753
BbvI GCAGC 2 cut(s) 240, 568
BccI CCATC 4 cut(s) 156, 319, 1030, 1432
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 2 cut(s) 141, 1080
BcnI CCSGG 2 cut(s) 555, 1298
BfaI CTAG 2 cut(s) 665, 1308
BfmI CTRYAG 1 cut(s) 304
BfuAI ACCTGC 1 cut(s) 1163
BglI GCCNNNNNGGC 1 cut(s) 941
BisI GCNGC 5 cut(s) 254, 582, 933, 936, 1302
BlpI GCTNAGC 2 cut(s) 747, 1283
BlsI GCNGC 5 cut(s) 255, 583, 934, 937, 1303
Bme1390I CCNGG 4 cut(s) 141, 555, 1080, 1298
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 5 cut(s) 127, 224, 330, 513, 961
BmrFI CCNGG 4 cut(s) 141, 555, 1080, 1298
BmsI GCATC 3 cut(s) 352, 358, 593
BoxI GACNNNNGTC 1 cut(s) 873
BpiI GAAGAC 1 cut(s) 807
BpmI CTGGAG 1 cut(s) 708
Bpu1102I GCTNAGC 2 cut(s) 747, 1283
BpuMI CCSGG 2 cut(s) 555, 1298
BsaJI CCNNGG 1 cut(s) 289
BsaXI ACNNNNNCTCC 8 cut(s) 21, 51, 158, 188, 199, 229, 1334, 1364
Bsc4I CCNNNNNNNGG 8 cut(s) 110, 146, 232, 736, 939, 1085, 1267, 1297
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 226, 639
BseBI CCWGG 2 cut(s) 141, 1080
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 6 cut(s) 167, 184, 367, 584, 892, 1177
BseLI CCNNNNNNNGG 8 cut(s) 110, 146, 232, 736, 939, 1085, 1267, 1297
BseMII CTCAG 2 cut(s) 738, 1274
BseNI ACTGG 2 cut(s) 226, 639
BseSI GKGCMC 1 cut(s) 1027
BseXI GCAGC 2 cut(s) 240, 568
Bsh1236I CGCG 2 cut(s) 1217, 1340
BshFI GGCC 1 cut(s) 1078
BsiHKAI GWGCWC 1 cut(s) 753
BsiSI CCGG 5 cut(s) 278, 555, 653, 1169, 1298
BslFI GGGAC 2 cut(s) 111, 524
BslI CCNNNNNNNGG 8 cut(s) 110, 146, 232, 736, 939, 1085, 1267, 1297
BsmFI GGGAC 2 cut(s) 111, 524
BsnI GGCC 1 cut(s) 1078
Bsp1286I GDGCHC 2 cut(s) 753, 1027
Bsp143I GATC 7 cut(s) 84, 402, 531, 683, 850, 959, 1201
Bsp1720I GCTNAGC 2 cut(s) 747, 1283
BspACI CCGC 8 cut(s) 205, 520, 933, 936, 1027, 1217, 1301, 1340
BspANI GGCC 1 cut(s) 1078
BspCNI CTCAG 2 cut(s) 739, 1275
BspFNI CGCG 2 cut(s) 1217, 1340
BspLI GGNNCC 5 cut(s) 127, 224, 330, 513, 961
BspMI ACCTGC 1 cut(s) 1163
BspPI GGATC 3 cut(s) 845, 954, 967
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 226, 639
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 7 cut(s) 84, 402, 531, 683, 850, 959, 1201
BssSI CACGAG 3 cut(s) 884, 1137, 1354
Bst2BI CACGAG 3 cut(s) 884, 1137, 1354
Bst2UI CCWGG 2 cut(s) 141, 1080
Bst4CI ACNGT 3 cut(s) 511, 538, 1350
Bst6I CTCTTC 3 cut(s) 165, 290, 1266
BstC8I GCNNGC 2 cut(s) 753, 1027
BstDEI CTNAG 7 cut(s) 258, 747, 812, 897, 987, 1283, 1441
BstEII GGTNACC 1 cut(s) 1312
BstF5I GGATG 6 cut(s) 167, 184, 367, 584, 892, 1177
BstFNI CGCG 2 cut(s) 1217, 1340
BstKTI GATC 7 cut(s) 87, 405, 534, 686, 853, 962, 1204
BstMBI GATC 7 cut(s) 84, 402, 531, 683, 850, 959, 1201
BstMWI GCNNNNNNNGC 3 cut(s) 106, 752, 941
BstNI CCWGG 2 cut(s) 141, 1080
BstNSI RCATGY 1 cut(s) 275
BstPAI GACNNNNGTC 1 cut(s) 873
BstPI GGTNACC 1 cut(s) 1312
BstSCI CCNGG 4 cut(s) 139, 553, 1078, 1296
BstSFI CTRYAG 1 cut(s) 304
BstSLI GKGCMC 1 cut(s) 1027
BstUI CGCG 2 cut(s) 1217, 1340
BstV1I GCAGC 2 cut(s) 240, 568
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 2 cut(s) 850, 959
BstYI RGATCY 2 cut(s) 850, 959
BsuRI GGCC 1 cut(s) 1078
BtsCI GGATG 6 cut(s) 167, 184, 367, 584, 892, 1177
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 61, 220
BveI ACCTGC 1 cut(s) 1163
Cac8I GCNNGC 2 cut(s) 753, 1027
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 1121
CviAII CATG 2 cut(s) 272, 949
CviQI GTAC 1 cut(s) 1121
DdeI CTNAG 7 cut(s) 258, 747, 812, 897, 987, 1283, 1441
DpnI GATC 7 cut(s) 86, 404, 533, 685, 852, 961, 1203
DpnII GATC 7 cut(s) 84, 402, 531, 683, 850, 959, 1201
EaeI YGGCCR 1 cut(s) 1076
Eam1104I CTCTTC 3 cut(s) 165, 290, 1266
EarI CTCTTC 3 cut(s) 165, 290, 1266
EciI GGCGGA 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 181
Eco91I GGTNACC 1 cut(s) 1312
EcoO109I RGGNCCY 1 cut(s) 125
EcoO65I GGTNACC 1 cut(s) 1312
EcoRII CCWGG 2 cut(s) 139, 1078
FaeI CATG 2 cut(s) 275, 952
FalI AAGNNNNNCTT 4 cut(s) 454, 486, 557, 589
FaqI GGGAC 2 cut(s) 111, 524
FatI CATG 2 cut(s) 271, 948
FauI CCCGC 1 cut(s) 1034
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 5 cut(s) 254, 582, 933, 936, 1302
FokI GGATG 6 cut(s) 171, 174, 374, 571, 879, 1164
Fsp4HI GCNGC 5 cut(s) 254, 582, 933, 936, 1302
FspBI CTAG 2 cut(s) 665, 1308
GluI GCNGC 5 cut(s) 254, 582, 933, 936, 1302
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 1 cut(s) 1078
HapII CCGG 5 cut(s) 278, 555, 653, 1169, 1298
Hin1II CATG 2 cut(s) 275, 952
HincII GTYRAC 2 cut(s) 177, 547
HindII GTYRAC 2 cut(s) 177, 547
HinfI GANTC 8 cut(s) 173, 181, 294, 309, 431, 465, 826, 1387
HpaII CCGG 5 cut(s) 278, 555, 653, 1169, 1298
HphI GGTGA 5 cut(s) 344, 464, 472, 484, 526
Hpy166II GTNNAC 8 cut(s) 61, 177, 264, 547, 618, 825, 1123, 1353
Hpy188I TCNGA 2 cut(s) 290, 713
Hpy188III TCNNGA 8 cut(s) 199, 298, 725, 1033, 1137, 1205, 1354, 1409
Hpy8I GTNNAC 8 cut(s) 61, 177, 264, 547, 618, 825, 1123, 1353
Hpy99I CGWCG 3 cut(s) 92, 135, 181
HpyAV CCTTC 7 cut(s) 82, 116, 230, 480, 774, 932, 980
HpyCH4III ACNGT 3 cut(s) 511, 538, 1350
HpyCH4IV ACGT 5 cut(s) 648, 818, 1004, 1119, 1256
HpyCH4V TGCA 6 cut(s) 275, 584, 845, 916, 1265, 1379
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 752, 941
HpyF3I CTNAG 7 cut(s) 258, 747, 812, 897, 987, 1283, 1441
HpySE526I ACGT 5 cut(s) 648, 818, 1004, 1119, 1256
Hsp92II CATG 2 cut(s) 275, 952
Kzo9I GATC 7 cut(s) 84, 402, 531, 683, 850, 959, 1201
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 2 cut(s) 240, 568
LweI GCATC 3 cut(s) 352, 358, 593
MaeI CTAG 2 cut(s) 665, 1308
MaeII ACGT 5 cut(s) 648, 818, 1004, 1119, 1256
MaeIII GTNAC 6 cut(s) 412, 478, 676, 1000, 1134, 1312
MalI GATC 7 cut(s) 86, 404, 533, 685, 852, 961, 1203
MboI GATC 7 cut(s) 84, 402, 531, 683, 850, 959, 1201
MflI RGATCY 2 cut(s) 850, 959
MhlI GDGCHC 2 cut(s) 753, 1027
MlsI TGGCCA 1 cut(s) 1078
MluCI AATT 9 cut(s) 17, 590, 659, 693, 717, 901, 1052, 1276, 1404
MluNI TGGCCA 1 cut(s) 1078
MlyI GAGTC 3 cut(s) 182, 820, 1396
MmeI TCCRAC 2 cut(s) 888, 1306
Mox20I TGGCCA 1 cut(s) 1078
MroXI GAANNNNTTC 3 cut(s) 469, 718, 1349
MscI TGGCCA 1 cut(s) 1078
MseI TTAA 2 cut(s) 20, 981
MslI CAYNNNNRTG 2 cut(s) 360, 1141
Msp20I TGGCCA 1 cut(s) 1078
MspI CCGG 5 cut(s) 278, 555, 653, 1169, 1298
MspR9I CCNGG 4 cut(s) 141, 555, 1080, 1298
MvaI CCWGG 2 cut(s) 141, 1080
MvnI CGCG 2 cut(s) 1217, 1340
MwoI GCNNNNNNNGC 3 cut(s) 106, 752, 941
NciI CCSGG 2 cut(s) 555, 1298
NdeII GATC 7 cut(s) 84, 402, 531, 683, 850, 959, 1201
NlaIII CATG 2 cut(s) 275, 952
NlaIV GGNNCC 5 cut(s) 127, 224, 330, 513, 961
NmuCI GTSAC 3 cut(s) 412, 478, 1134
NspI RCATGY 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 1141
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdmI GAANNNNTTC 3 cut(s) 469, 718, 1349
PfeI GAWTC 5 cut(s) 181, 294, 309, 431, 465
PkrI GCNGC 5 cut(s) 255, 583, 934, 937, 1303
PleI GAGTC 3 cut(s) 181, 820, 1395
PpsI GAGTC 3 cut(s) 181, 820, 1395
PpuMI RGGWCCY 1 cut(s) 125
PshAI GACNNNNGTC 1 cut(s) 873
PshBI ATTAAT 1 cut(s) 20
PsiI TTATAA 2 cut(s) 906, 1050
Psp1406I AACGTT 3 cut(s) 818, 1004, 1256
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 139, 1078
PspEI GGTNACC 1 cut(s) 1312
PspGI CCWGG 2 cut(s) 139, 1078
PspN4I GGNNCC 5 cut(s) 127, 224, 330, 513, 961
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PsuI RGATCY 2 cut(s) 850, 959
RsaI GTAC 1 cut(s) 1122
RsaNI GTAC 1 cut(s) 1121
RseI CAYNNNNRTG 2 cut(s) 360, 1141
SalI GTCGAC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 20, 981
SatI GCNGC 5 cut(s) 254, 582, 933, 936, 1302
Sau3AI GATC 7 cut(s) 84, 402, 531, 683, 850, 959, 1201
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 3 cut(s) 182, 820, 1396
ScrFI CCNGG 4 cut(s) 141, 555, 1080, 1298
SduI GDGCHC 2 cut(s) 753, 1027
SfaNI GCATC 3 cut(s) 352, 358, 593
SfcI CTRYAG 1 cut(s) 304
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 360, 1141
Sse9I AATT 9 cut(s) 17, 590, 659, 693, 717, 901, 1052, 1276, 1404
SsiI CCGC 8 cut(s) 205, 520, 933, 936, 1027, 1217, 1301, 1340
SspMI CTAG 2 cut(s) 665, 1308
StyD4I CCNGG 4 cut(s) 139, 553, 1078, 1296
TaaI ACNGT 3 cut(s) 511, 538, 1350
TaiI ACGT 5 cut(s) 651, 821, 1007, 1122, 1259
TaqI TCGA 6 cut(s) 87, 96, 176, 297, 405, 1032
TasI AATT 9 cut(s) 17, 590, 659, 693, 717, 901, 1052, 1276, 1404
TauI GCSGC 3 cut(s) 935, 938, 1304
TfiI GAWTC 5 cut(s) 181, 294, 309, 431, 465
Tru1I TTAA 2 cut(s) 20, 981
Tru9I TTAA 2 cut(s) 20, 981
TscAI CASTG 2 cut(s) 68, 220
TseFI GTSAC 3 cut(s) 412, 478, 1134
TseI GCWGC 2 cut(s) 253, 581
Tsp45I GTSAC 3 cut(s) 412, 478, 1134
TspGWI ACGGA 2 cut(s) 65, 431
TspRI CASTG 2 cut(s) 68, 220
VpaK11BI GGWCC 1 cut(s) 125
VspI ATTAAT 1 cut(s) 20
XapI RAATTY 4 cut(s) 717, 1052, 1276, 1404
XceI RCATGY 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 176
XmnI GAANNNNTTC 3 cut(s) 469, 718, 1349
XspI CTAG 2 cut(s) 665, 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.