Cupin
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22640 |
| fragaria_vesca | FvH4_2g23190 FvH4_4g15931 FvH4_4g15931 |
| malus_domestica | MD03G1261200.v1.1 MD11G1140200.v1.1 MD11G1281600.v1.1 MD13G1196800.v1.1 MD16G1197100.v1.1 MD16G1197200.v1.1 |
| prunus_persica | Prupe.1G017700_v2.0.a1 Prupe.1G018000_v2.0.a1 Prupe.8G237500_v2.0.a1 |
| pyrus_communis | pycom09g17330 pycom11g24970 pycom13g16920 pycom13g16930 pycom16g16590 pycom16g16620 |
| rosa_chinensis | RchiOBHm_Chr4g0415511 RchiOBHm_Chr6g0290441 |
| rosa_laevigata | RLG00000008067 RLG00000012215 |
| rosa_multiflora | Rmu_sc0002890.1_g000006 Rmu_sc0007265.1_g000001 Rmu_sc0007625.1_g000002 Rmu_sc0020894.1_g000005 Rmu_sc0020894.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00359290 Rroxscaffold_7G00177060 |
| rosa_rugosa | Rorug04G0134600 Rorug06G0212700 |
| rosa_samantha | Rh4AG195500 Rh4BG194300 Rh4CG206400 Rh4DG193300 Rh6AG322900 Rh6BG330300 Rh6CG336400 Rh6DG323300 |
| rosa_wichuraiana | Rw4G016650 Rw6G027990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 906, 1050 |
| Acc36I | ACCTGC | 1 cut(s) | 1163 |
| AccI | GTMKAC | 1 cut(s) | 176 |
| AccII | CGCG | 2 cut(s) | 1217, 1340 |
| AciI | CCGC | 8 cut(s) | 205, 520, 933, 936, 1027, 1217, 1301, 1340 |
| AclI | AACGTT | 3 cut(s) | 818, 1004, 1256 |
| AclWI | GGATC | 3 cut(s) | 845, 954, 967 |
| AcoI | YGGCCR | 1 cut(s) | 1076 |
| AcsI | RAATTY | 4 cut(s) | 717, 1052, 1276, 1404 |
| AcuI | CTGAAG | 1 cut(s) | 181 |
| AfaI | GTAC | 1 cut(s) | 1122 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 110, 146, 232, 736, 939, 1085, 1267, 1297 |
| AgsI | TTSAA | 5 cut(s) | 610, 646, 768, 835, 1433 |
| AjnI | CCWGG | 2 cut(s) | 139, 1078 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1389, 1421 |
| AleI | CACNNNNGTG | 1 cut(s) | 1141 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1334, 1366 |
| AluBI | AGCT | 1 cut(s) | 53 |
| AluI | AGCT | 1 cut(s) | 53 |
| Alw21I | GWGCWC | 1 cut(s) | 753 |
| AlwI | GGATC | 3 cut(s) | 845, 954, 967 |
| AoxI | GGCC | 1 cut(s) | 1076 |
| ApeKI | GCWGC | 2 cut(s) | 253, 581 |
| ApoI | RAATTY | 4 cut(s) | 717, 1052, 1276, 1404 |
| AseI | ATTAAT | 1 cut(s) | 20 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 469, 718, 1349 |
| AspS9I | GGNCC | 1 cut(s) | 125 |
| AsuC2I | CCSGG | 2 cut(s) | 555, 1298 |
| AsuHPI | GGTGA | 5 cut(s) | 344, 464, 472, 484, 526 |
| AvaII | GGWCC | 1 cut(s) | 125 |
| BaeGI | GKGCMC | 1 cut(s) | 1027 |
| BalI | TGGCCA | 1 cut(s) | 1078 |
| BamHI | GGATCC | 1 cut(s) | 959 |
| BauI | CACGAG | 3 cut(s) | 884, 1137, 1354 |
| BbsI | GAAGAC | 1 cut(s) | 807 |
| Bbv12I | GWGCWC | 1 cut(s) | 753 |
| BbvI | GCAGC | 2 cut(s) | 240, 568 |
| BccI | CCATC | 4 cut(s) | 156, 319, 1030, 1432 |
| BceAI | ACGGC | 1 cut(s) | 120 |
| BciT130I | CCWGG | 2 cut(s) | 141, 1080 |
| BcnI | CCSGG | 2 cut(s) | 555, 1298 |
| BfaI | CTAG | 2 cut(s) | 665, 1308 |
| BfmI | CTRYAG | 1 cut(s) | 304 |
| BfuAI | ACCTGC | 1 cut(s) | 1163 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 941 |
| BisI | GCNGC | 5 cut(s) | 254, 582, 933, 936, 1302 |
| BlpI | GCTNAGC | 2 cut(s) | 747, 1283 |
| BlsI | GCNGC | 5 cut(s) | 255, 583, 934, 937, 1303 |
| Bme1390I | CCNGG | 4 cut(s) | 141, 555, 1080, 1298 |
| Bme18I | GGWCC | 1 cut(s) | 125 |
| BmgT120I | GGNCC | 1 cut(s) | 125 |
| BmiI | GGNNCC | 5 cut(s) | 127, 224, 330, 513, 961 |
| BmrFI | CCNGG | 4 cut(s) | 141, 555, 1080, 1298 |
| BmsI | GCATC | 3 cut(s) | 352, 358, 593 |
| BoxI | GACNNNNGTC | 1 cut(s) | 873 |
| BpiI | GAAGAC | 1 cut(s) | 807 |
| BpmI | CTGGAG | 1 cut(s) | 708 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 747, 1283 |
| BpuMI | CCSGG | 2 cut(s) | 555, 1298 |
| BsaJI | CCNNGG | 1 cut(s) | 289 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 21, 51, 158, 188, 199, 229, 1334, 1364 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 110, 146, 232, 736, 939, 1085, 1267, 1297 |
| Bse118I | RCCGGY | 1 cut(s) | 277 |
| Bse1I | ACTGG | 2 cut(s) | 226, 639 |
| BseBI | CCWGG | 2 cut(s) | 141, 1080 |
| BseDI | CCNNGG | 1 cut(s) | 289 |
| BseGI | GGATG | 6 cut(s) | 167, 184, 367, 584, 892, 1177 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 110, 146, 232, 736, 939, 1085, 1267, 1297 |
| BseMII | CTCAG | 2 cut(s) | 738, 1274 |
| BseNI | ACTGG | 2 cut(s) | 226, 639 |
| BseSI | GKGCMC | 1 cut(s) | 1027 |
| BseXI | GCAGC | 2 cut(s) | 240, 568 |
| Bsh1236I | CGCG | 2 cut(s) | 1217, 1340 |
| BshFI | GGCC | 1 cut(s) | 1078 |
| BsiHKAI | GWGCWC | 1 cut(s) | 753 |
| BsiSI | CCGG | 5 cut(s) | 278, 555, 653, 1169, 1298 |
| BslFI | GGGAC | 2 cut(s) | 111, 524 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 110, 146, 232, 736, 939, 1085, 1267, 1297 |
| BsmFI | GGGAC | 2 cut(s) | 111, 524 |
| BsnI | GGCC | 1 cut(s) | 1078 |
| Bsp1286I | GDGCHC | 2 cut(s) | 753, 1027 |
| Bsp143I | GATC | 7 cut(s) | 84, 402, 531, 683, 850, 959, 1201 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 747, 1283 |
| BspACI | CCGC | 8 cut(s) | 205, 520, 933, 936, 1027, 1217, 1301, 1340 |
| BspANI | GGCC | 1 cut(s) | 1078 |
| BspCNI | CTCAG | 2 cut(s) | 739, 1275 |
| BspFNI | CGCG | 2 cut(s) | 1217, 1340 |
| BspLI | GGNNCC | 5 cut(s) | 127, 224, 330, 513, 961 |
| BspMI | ACCTGC | 1 cut(s) | 1163 |
| BspPI | GGATC | 3 cut(s) | 845, 954, 967 |
| BsrFI | RCCGGY | 1 cut(s) | 277 |
| BsrI | ACTGG | 2 cut(s) | 226, 639 |
| BssAI | RCCGGY | 1 cut(s) | 277 |
| BssECI | CCNNGG | 1 cut(s) | 289 |
| BssMI | GATC | 7 cut(s) | 84, 402, 531, 683, 850, 959, 1201 |
| BssSI | CACGAG | 3 cut(s) | 884, 1137, 1354 |
| Bst2BI | CACGAG | 3 cut(s) | 884, 1137, 1354 |
| Bst2UI | CCWGG | 2 cut(s) | 141, 1080 |
| Bst4CI | ACNGT | 3 cut(s) | 511, 538, 1350 |
| Bst6I | CTCTTC | 3 cut(s) | 165, 290, 1266 |
| BstC8I | GCNNGC | 2 cut(s) | 753, 1027 |
| BstDEI | CTNAG | 7 cut(s) | 258, 747, 812, 897, 987, 1283, 1441 |
| BstEII | GGTNACC | 1 cut(s) | 1312 |
| BstF5I | GGATG | 6 cut(s) | 167, 184, 367, 584, 892, 1177 |
| BstFNI | CGCG | 2 cut(s) | 1217, 1340 |
| BstKTI | GATC | 7 cut(s) | 87, 405, 534, 686, 853, 962, 1204 |
| BstMBI | GATC | 7 cut(s) | 84, 402, 531, 683, 850, 959, 1201 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 106, 752, 941 |
| BstNI | CCWGG | 2 cut(s) | 141, 1080 |
| BstNSI | RCATGY | 1 cut(s) | 275 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 873 |
| BstPI | GGTNACC | 1 cut(s) | 1312 |
| BstSCI | CCNGG | 4 cut(s) | 139, 553, 1078, 1296 |
| BstSFI | CTRYAG | 1 cut(s) | 304 |
| BstSLI | GKGCMC | 1 cut(s) | 1027 |
| BstUI | CGCG | 2 cut(s) | 1217, 1340 |
| BstV1I | GCAGC | 2 cut(s) | 240, 568 |
| BstV2I | GAAGAC | 1 cut(s) | 807 |
| BstX2I | RGATCY | 2 cut(s) | 850, 959 |
| BstYI | RGATCY | 2 cut(s) | 850, 959 |
| BsuRI | GGCC | 1 cut(s) | 1078 |
| BtsCI | GGATG | 6 cut(s) | 167, 184, 367, 584, 892, 1177 |
| BtsI | GCAGTG | 1 cut(s) | 61 |
| BtsIMutI | CAGTG | 2 cut(s) | 61, 220 |
| BveI | ACCTGC | 1 cut(s) | 1163 |
| Cac8I | GCNNGC | 2 cut(s) | 753, 1027 |
| Cfr10I | RCCGGY | 1 cut(s) | 277 |
| Cfr13I | GGNCC | 1 cut(s) | 125 |
| Csp6I | GTAC | 1 cut(s) | 1121 |
| CviAII | CATG | 2 cut(s) | 272, 949 |
| CviQI | GTAC | 1 cut(s) | 1121 |
| DdeI | CTNAG | 7 cut(s) | 258, 747, 812, 897, 987, 1283, 1441 |
| DpnI | GATC | 7 cut(s) | 86, 404, 533, 685, 852, 961, 1203 |
| DpnII | GATC | 7 cut(s) | 84, 402, 531, 683, 850, 959, 1201 |
| EaeI | YGGCCR | 1 cut(s) | 1076 |
| Eam1104I | CTCTTC | 3 cut(s) | 165, 290, 1266 |
| EarI | CTCTTC | 3 cut(s) | 165, 290, 1266 |
| EciI | GGCGGA | 1 cut(s) | 509 |
| Eco47I | GGWCC | 1 cut(s) | 125 |
| Eco57I | CTGAAG | 1 cut(s) | 181 |
| Eco91I | GGTNACC | 1 cut(s) | 1312 |
| EcoO109I | RGGNCCY | 1 cut(s) | 125 |
| EcoO65I | GGTNACC | 1 cut(s) | 1312 |
| EcoRII | CCWGG | 2 cut(s) | 139, 1078 |
| FaeI | CATG | 2 cut(s) | 275, 952 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 454, 486, 557, 589 |
| FaqI | GGGAC | 2 cut(s) | 111, 524 |
| FatI | CATG | 2 cut(s) | 271, 948 |
| FauI | CCCGC | 1 cut(s) | 1034 |
| FblI | GTMKAC | 1 cut(s) | 176 |
| Fnu4HI | GCNGC | 5 cut(s) | 254, 582, 933, 936, 1302 |
| FokI | GGATG | 6 cut(s) | 171, 174, 374, 571, 879, 1164 |
| Fsp4HI | GCNGC | 5 cut(s) | 254, 582, 933, 936, 1302 |
| FspBI | CTAG | 2 cut(s) | 665, 1308 |
| GluI | GCNGC | 5 cut(s) | 254, 582, 933, 936, 1302 |
| GsuI | CTGGAG | 1 cut(s) | 708 |
| HaeIII | GGCC | 1 cut(s) | 1078 |
| HapII | CCGG | 5 cut(s) | 278, 555, 653, 1169, 1298 |
| Hin1II | CATG | 2 cut(s) | 275, 952 |
| HincII | GTYRAC | 2 cut(s) | 177, 547 |
| HindII | GTYRAC | 2 cut(s) | 177, 547 |
| HinfI | GANTC | 8 cut(s) | 173, 181, 294, 309, 431, 465, 826, 1387 |
| HpaII | CCGG | 5 cut(s) | 278, 555, 653, 1169, 1298 |
| HphI | GGTGA | 5 cut(s) | 344, 464, 472, 484, 526 |
| Hpy166II | GTNNAC | 8 cut(s) | 61, 177, 264, 547, 618, 825, 1123, 1353 |
| Hpy188I | TCNGA | 2 cut(s) | 290, 713 |
| Hpy188III | TCNNGA | 8 cut(s) | 199, 298, 725, 1033, 1137, 1205, 1354, 1409 |
| Hpy8I | GTNNAC | 8 cut(s) | 61, 177, 264, 547, 618, 825, 1123, 1353 |
| Hpy99I | CGWCG | 3 cut(s) | 92, 135, 181 |
| HpyAV | CCTTC | 7 cut(s) | 82, 116, 230, 480, 774, 932, 980 |
| HpyCH4III | ACNGT | 3 cut(s) | 511, 538, 1350 |
| HpyCH4IV | ACGT | 5 cut(s) | 648, 818, 1004, 1119, 1256 |
| HpyCH4V | TGCA | 6 cut(s) | 275, 584, 845, 916, 1265, 1379 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 106, 752, 941 |
| HpyF3I | CTNAG | 7 cut(s) | 258, 747, 812, 897, 987, 1283, 1441 |
| HpySE526I | ACGT | 5 cut(s) | 648, 818, 1004, 1119, 1256 |
| Hsp92II | CATG | 2 cut(s) | 275, 952 |
| Kzo9I | GATC | 7 cut(s) | 84, 402, 531, 683, 850, 959, 1201 |
| LmnI | GCTCC | 1 cut(s) | 328 |
| Lsp1109I | GCAGC | 2 cut(s) | 240, 568 |
| LweI | GCATC | 3 cut(s) | 352, 358, 593 |
| MaeI | CTAG | 2 cut(s) | 665, 1308 |
| MaeII | ACGT | 5 cut(s) | 648, 818, 1004, 1119, 1256 |
| MaeIII | GTNAC | 6 cut(s) | 412, 478, 676, 1000, 1134, 1312 |
| MalI | GATC | 7 cut(s) | 86, 404, 533, 685, 852, 961, 1203 |
| MboI | GATC | 7 cut(s) | 84, 402, 531, 683, 850, 959, 1201 |
| MflI | RGATCY | 2 cut(s) | 850, 959 |
| MhlI | GDGCHC | 2 cut(s) | 753, 1027 |
| MlsI | TGGCCA | 1 cut(s) | 1078 |
| MluCI | AATT | 9 cut(s) | 17, 590, 659, 693, 717, 901, 1052, 1276, 1404 |
| MluNI | TGGCCA | 1 cut(s) | 1078 |
| MlyI | GAGTC | 3 cut(s) | 182, 820, 1396 |
| MmeI | TCCRAC | 2 cut(s) | 888, 1306 |
| Mox20I | TGGCCA | 1 cut(s) | 1078 |
| MroXI | GAANNNNTTC | 3 cut(s) | 469, 718, 1349 |
| MscI | TGGCCA | 1 cut(s) | 1078 |
| MseI | TTAA | 2 cut(s) | 20, 981 |
| MslI | CAYNNNNRTG | 2 cut(s) | 360, 1141 |
| Msp20I | TGGCCA | 1 cut(s) | 1078 |
| MspI | CCGG | 5 cut(s) | 278, 555, 653, 1169, 1298 |
| MspR9I | CCNGG | 4 cut(s) | 141, 555, 1080, 1298 |
| MvaI | CCWGG | 2 cut(s) | 141, 1080 |
| MvnI | CGCG | 2 cut(s) | 1217, 1340 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 106, 752, 941 |
| NciI | CCSGG | 2 cut(s) | 555, 1298 |
| NdeII | GATC | 7 cut(s) | 84, 402, 531, 683, 850, 959, 1201 |
| NlaIII | CATG | 2 cut(s) | 275, 952 |
| NlaIV | GGNNCC | 5 cut(s) | 127, 224, 330, 513, 961 |
| NmuCI | GTSAC | 3 cut(s) | 412, 478, 1134 |
| NspI | RCATGY | 1 cut(s) | 275 |
| OliI | CACNNNNGTG | 1 cut(s) | 1141 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 93 |
| PdmI | GAANNNNTTC | 3 cut(s) | 469, 718, 1349 |
| PfeI | GAWTC | 5 cut(s) | 181, 294, 309, 431, 465 |
| PkrI | GCNGC | 5 cut(s) | 255, 583, 934, 937, 1303 |
| PleI | GAGTC | 3 cut(s) | 181, 820, 1395 |
| PpsI | GAGTC | 3 cut(s) | 181, 820, 1395 |
| PpuMI | RGGWCCY | 1 cut(s) | 125 |
| PshAI | GACNNNNGTC | 1 cut(s) | 873 |
| PshBI | ATTAAT | 1 cut(s) | 20 |
| PsiI | TTATAA | 2 cut(s) | 906, 1050 |
| Psp1406I | AACGTT | 3 cut(s) | 818, 1004, 1256 |
| Psp5II | RGGWCCY | 1 cut(s) | 125 |
| Psp6I | CCWGG | 2 cut(s) | 139, 1078 |
| PspEI | GGTNACC | 1 cut(s) | 1312 |
| PspGI | CCWGG | 2 cut(s) | 139, 1078 |
| PspN4I | GGNNCC | 5 cut(s) | 127, 224, 330, 513, 961 |
| PspPI | GGNCC | 1 cut(s) | 125 |
| PspPPI | RGGWCCY | 1 cut(s) | 125 |
| PsuI | RGATCY | 2 cut(s) | 850, 959 |
| RsaI | GTAC | 1 cut(s) | 1122 |
| RsaNI | GTAC | 1 cut(s) | 1121 |
| RseI | CAYNNNNRTG | 2 cut(s) | 360, 1141 |
| SalI | GTCGAC | 1 cut(s) | 175 |
| SaqAI | TTAA | 2 cut(s) | 20, 981 |
| SatI | GCNGC | 5 cut(s) | 254, 582, 933, 936, 1302 |
| Sau3AI | GATC | 7 cut(s) | 84, 402, 531, 683, 850, 959, 1201 |
| Sau96I | GGNCC | 1 cut(s) | 125 |
| SchI | GAGTC | 3 cut(s) | 182, 820, 1396 |
| ScrFI | CCNGG | 4 cut(s) | 141, 555, 1080, 1298 |
| SduI | GDGCHC | 2 cut(s) | 753, 1027 |
| SfaNI | GCATC | 3 cut(s) | 352, 358, 593 |
| SfcI | CTRYAG | 1 cut(s) | 304 |
| SinI | GGWCC | 1 cut(s) | 125 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 360, 1141 |
| Sse9I | AATT | 9 cut(s) | 17, 590, 659, 693, 717, 901, 1052, 1276, 1404 |
| SsiI | CCGC | 8 cut(s) | 205, 520, 933, 936, 1027, 1217, 1301, 1340 |
| SspMI | CTAG | 2 cut(s) | 665, 1308 |
| StyD4I | CCNGG | 4 cut(s) | 139, 553, 1078, 1296 |
| TaaI | ACNGT | 3 cut(s) | 511, 538, 1350 |
| TaiI | ACGT | 5 cut(s) | 651, 821, 1007, 1122, 1259 |
| TaqI | TCGA | 6 cut(s) | 87, 96, 176, 297, 405, 1032 |
| TasI | AATT | 9 cut(s) | 17, 590, 659, 693, 717, 901, 1052, 1276, 1404 |
| TauI | GCSGC | 3 cut(s) | 935, 938, 1304 |
| TfiI | GAWTC | 5 cut(s) | 181, 294, 309, 431, 465 |
| Tru1I | TTAA | 2 cut(s) | 20, 981 |
| Tru9I | TTAA | 2 cut(s) | 20, 981 |
| TscAI | CASTG | 2 cut(s) | 68, 220 |
| TseFI | GTSAC | 3 cut(s) | 412, 478, 1134 |
| TseI | GCWGC | 2 cut(s) | 253, 581 |
| Tsp45I | GTSAC | 3 cut(s) | 412, 478, 1134 |
| TspGWI | ACGGA | 2 cut(s) | 65, 431 |
| TspRI | CASTG | 2 cut(s) | 68, 220 |
| VpaK11BI | GGWCC | 1 cut(s) | 125 |
| VspI | ATTAAT | 1 cut(s) | 20 |
| XapI | RAATTY | 4 cut(s) | 717, 1052, 1276, 1404 |
| XceI | RCATGY | 1 cut(s) | 275 |
| XmiI | GTMKAC | 1 cut(s) | 176 |
| XmnI | GAANNNNTTC | 3 cut(s) | 469, 718, 1349 |
| XspI | CTAG | 2 cut(s) | 665, 1308 |