Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020894.1

Orthogroup ID

OG0002332

Physical Location & Seq

Genomic Coordinates Reverse (-)

26875 .. 28546

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020894.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgtttcagcaaaaattcaggtctcaagaaggtgggatgtatgttcttgagaggtttaccaagaatgaaaataagcttcttcgcggcattaggaactaccgattagccatcatcgaggccaagcccaacactttcgtcctcccacaccattgtgatgctgaatctattttcgttgttatcaatggacgttgcacctgtacaatgttgatgcaagacaacaaagagtcattcaacatggaaatgggtgatgtcctcagagttcctgcaggggctaccgtctaccttgttaacaacaacaatgatcagactctaagaattgcaaagctcaagcagccagtcaacactcctggacgatttgaggaattcttccctgcaagttctcaagacctagactcatacttaaacgttttcagcgatgacattcttgaatcagccttcaatcaacagcagaagaggcaaggcatggtaatgagggcatcaccacaacaactccaggcattgagtcagcacgcttcttcacccaggagcaaaggccgtcagtctggcaagggtccattcaatcttcgaaaccaaaagcccatccaggccaacgagttcggcaaattattcgaagctcgccctgagaagttcgatcaactccaggacatggatgtctcagtcacttgcgttgaagtcaacaatgaagctatgatgctgccacactacaattctaaagcaatattcgtggtgctggttgtggaaggaagcggacgggtcgagatggcatgcccacacatggcaagccagagccaaatgggtgaggaagaagtagaacaacaaggagaacagatgaaggtcacagctgatgtatcagagggtgatgttttcgttatcccagcaggtcatcccattgccatagttgcccaaaaccaacaattgaaaatgttgggatttggaatcaatgcccaaaacaacaagaggaacttcattgcagggagagaggctaacccgattagggagatggagagagaggctaagcaactgaccttcgggcaagagatggagcagatcatcaacagacagagggaatcttatttcgccccgacagggcagagccagcagcagagaggaggcacagacgagcccttatcttcaattttggcatttgcaggcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0030312 GO:0031410 GO:0031982 GO:0033095 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 Vicilin_N

Protein Analysis

385

Amino Acids

43.38

Weight (kDa)

5.97

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22640
fragaria_vesca	FvH4_2g23190 FvH4_4g15931 FvH4_4g15931
malus_domestica	MD03G1261200.v1.1 MD11G1140200.v1.1 MD11G1281600.v1.1 MD13G1196800.v1.1 MD16G1197100.v1.1 MD16G1197200.v1.1
prunus_persica	Prupe.1G017700_v2.0.a1 Prupe.1G018000_v2.0.a1 Prupe.8G237500_v2.0.a1
pyrus_communis	pycom09g17330 pycom11g24970 pycom13g16920 pycom13g16930 pycom16g16590 pycom16g16620
rosa_chinensis	RchiOBHm_Chr4g0415511 RchiOBHm_Chr6g0290441
rosa_laevigata	RLG00000008067 RLG00000012215
rosa_multiflora	Rmu_sc0002890.1_g000006 Rmu_sc0007265.1_g000001 Rmu_sc0007625.1_g000002 Rmu_sc0020894.1_g000005 Rmu_sc0020894.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359290 Rroxscaffold_7G00177060
rosa_rugosa	Rorug04G0134600 Rorug06G0212700
rosa_samantha	Rh4AG195500 Rh4BG194300 Rh4CG206400 Rh4DG193300 Rh6AG322900 Rh6BG330300 Rh6CG336400 Rh6DG323300
rosa_wichuraiana	Rw4G016650 Rw6G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	650
Acc36I	ACCTGC	1 cut(s)	869
AccB7I	CCANNNNNTGG	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	84
AciI	CCGC	2 cut(s)	84, 747
AclI	AACGTT	1 cut(s)	405
AcsI	RAATTY	2 cut(s)	14, 362
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	4 cut(s)	646, 775, 994, 1086
AgsI	TTSAA	7 cut(s)	232, 428, 439, 559, 671, 919, 1134
AjnI	CCWGG	5 cut(s)	346, 492, 521, 582, 639
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	5 cut(s)	76, 325, 614, 686, 842
AluI	AGCT	5 cut(s)	76, 325, 614, 686, 842
Alw26I	GTCTC	2 cut(s)	27, 658
AoxI	GGCC	3 cut(s)	117, 532, 585
ApeKI	GCWGC	3 cut(s)	331, 694, 1099
ApoI	RAATTY	2 cut(s)	14, 362
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	5 cut(s)	257, 471, 510, 809, 869
AsuII	TTCGAA	2 cut(s)	565, 609
AvaII	GGWCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	1125
BbvI	GCAGC	3 cut(s)	343, 681, 1111
BccI	CCATC	5 cut(s)	116, 587, 754, 994, 1033
BceAI	ACGGC	1 cut(s)	519
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	5 cut(s)	348, 494, 523, 584, 641
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	27, 658
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	869
BisI	GCNGC	4 cut(s)	85, 332, 695, 1100
BlpI	GCTNAGC	1 cut(s)	1014
BlsI	GCNGC	4 cut(s)	86, 333, 696, 1101
Bme1390I	CCNGG	5 cut(s)	348, 494, 523, 584, 641
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	5 cut(s)	348, 494, 523, 584, 641
BmsI	GCATC	4 cut(s)	145, 198, 485, 681
BpmI	CTGGAG	2 cut(s)	476, 623
Bpu1102I	GCTNAGC	1 cut(s)	1014
Bpu14I	TTCGAA	2 cut(s)	565, 609
BpuEI	CTTGAG	4 cut(s)	9, 68, 311, 366
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	521
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	4 cut(s)	646, 775, 994, 1086
Bse1I	ACTGG	1 cut(s)	335
Bse3DI	GCAATG	2 cut(s)	888, 966
BseBI	CCWGG	5 cut(s)	348, 494, 523, 584, 641
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	4 cut(s)	42, 579, 655, 883
BseLI	CCNNNNNNNGG	4 cut(s)	646, 775, 994, 1086
BseMI	GCAATG	2 cut(s)	888, 966
BseMII	CTCAG	3 cut(s)	268, 612, 669
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	1122
BseXI	GCAGC	3 cut(s)	343, 681, 1111
BseYI	CCCAGC	1 cut(s)	874
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	119, 534, 587
BslI	CCNNNNNNNGG	4 cut(s)	646, 775, 994, 1086
BsmAI	GTCTC	2 cut(s)	27, 658
BsnI	GGCC	3 cut(s)	119, 534, 587
Bso31I	GGTCTC	1 cut(s)	27
Bsp119I	TTCGAA	2 cut(s)	565, 609
Bsp1286I	GDGCHC	1 cut(s)	1125
Bsp1407I	TGTACA	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	301, 631, 1047
Bsp1720I	GCTNAGC	1 cut(s)	1014
BspACI	CCGC	2 cut(s)	84, 747
BspANI	GGCC	3 cut(s)	119, 534, 587
BspCNI	CTCAG	3 cut(s)	267, 613, 668
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	552
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	869
BspT104I	TTCGAA	2 cut(s)	565, 609
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	2 cut(s)	888, 966
BsrGI	TGTACA	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	3 cut(s)	301, 631, 1047
Bst2UI	CCWGG	5 cut(s)	348, 494, 523, 584, 641
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	197
BstBI	TTCGAA	2 cut(s)	565, 609
BstC8I	GCNNGC	6 cut(s)	510, 616, 766, 781, 1097, 1150
BstDEI	CTNAG	5 cut(s)	254, 311, 621, 655, 1014
BstF5I	GGATG	4 cut(s)	42, 579, 655, 883
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	304, 634, 1050
BstMAI	GTCTC	2 cut(s)	27, 658
BstMBI	GATC	3 cut(s)	301, 631, 1047
BstMWI	GCNNNNNNNGC	4 cut(s)	331, 454, 899, 1096
BstNI	CCWGG	5 cut(s)	348, 494, 523, 584, 641
BstNSI	RCATGY	1 cut(s)	768
BstSCI	CCNGG	5 cut(s)	346, 492, 521, 582, 639
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	343, 681, 1111
BsuRI	GGCC	3 cut(s)	119, 534, 587
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	4 cut(s)	42, 579, 655, 883
BveI	ACCTGC	1 cut(s)	869
Cac8I	GCNNGC	6 cut(s)	510, 616, 766, 781, 1097, 1150
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	198
CspCI	CAANNNNNGTGG	2 cut(s)	705, 740
CviAII	CATG	5 cut(s)	235, 463, 646, 765, 775
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	5 cut(s)	254, 311, 621, 655, 1014
DpnI	GATC	3 cut(s)	303, 633, 1049
DpnII	GATC	3 cut(s)	301, 631, 1047
DrdI	GACNNNNNNGTC	1 cut(s)	650
DseDI	GACNNNNNNGTC	1 cut(s)	650
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	1125
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	362
EcoRII	CCWGG	5 cut(s)	346, 492, 521, 582, 639
EcoT38I	GRGCYC	1 cut(s)	1125
FaeI	CATG	5 cut(s)	238, 466, 649, 768, 778
FaiI	YATR	9 cut(s)	42, 236, 397, 464, 647, 689, 766, 776, 896
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FatI	CATG	5 cut(s)	234, 462, 645, 764, 774
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	85, 332, 695, 1100
FokI	GGATG	4 cut(s)	49, 566, 662, 870
FriOI	GRGCYC	1 cut(s)	1125
Fsp4HI	GCNGC	4 cut(s)	85, 332, 695, 1100
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	4 cut(s)	85, 332, 695, 1100
GsaI	CCCAGC	1 cut(s)	878
GsuI	CTGGAG	2 cut(s)	476, 623
HaeIII	GGCC	3 cut(s)	119, 534, 587
Hin1II	CATG	5 cut(s)	238, 466, 649, 768, 778
HincII	GTYRAC	3 cut(s)	289, 340, 676
HindII	GTYRAC	3 cut(s)	289, 340, 676
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	8 cut(s)	161, 224, 307, 392, 428, 502, 936, 1067
HpaI	GTTAAC	1 cut(s)	289
HphI	GGTGA	5 cut(s)	257, 471, 510, 809, 869
Hpy166II	GTNNAC	5 cut(s)	57, 280, 289, 340, 676
Hpy188I	TCNGA	3 cut(s)	257, 306, 853
Hpy188III	TCNNGA	5 cut(s)	26, 47, 383, 425, 757
Hpy8I	GTNNAC	5 cut(s)	57, 280, 289, 340, 676
HpyAV	CCTTC	5 cut(s)	23, 445, 734, 826, 1036
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	187, 405
HpyCH4V	TGCA	7 cut(s)	192, 211, 266, 320, 374, 971, 1148
HpyF10VI	GCNNNNNNNGC	4 cut(s)	331, 454, 899, 1096
HpyF3I	CTNAG	5 cut(s)	254, 311, 621, 655, 1014
HpySE526I	ACGT	2 cut(s)	187, 405
Hsp92II	CATG	5 cut(s)	238, 466, 649, 768, 778
Ksp22I	TGATCA	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	301, 631, 1047
LmnI	GCTCC	2 cut(s)	525, 1042
Lsp1109I	GCAGC	3 cut(s)	343, 681, 1111
LweI	GCATC	4 cut(s)	145, 198, 485, 681
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	2 cut(s)	187, 405
MaeIII	GTNAC	2 cut(s)	658, 835
MalI	GATC	3 cut(s)	303, 633, 1049
MboI	GATC	3 cut(s)	301, 631, 1047
MboII	GAAGA	7 cut(s)	71, 358, 463, 507, 554, 815, 1122
MfeI	CAATTG	1 cut(s)	914
MhlI	GDGCHC	1 cut(s)	1125
MluCI	AATT	7 cut(s)	14, 315, 362, 602, 706, 914, 1134
MlyI	GAGTC	4 cut(s)	233, 301, 386, 511
MseI	TTAA	3 cut(s)	288, 401, 1156
MslI	CAYNNNNRTG	4 cut(s)	150, 153, 239, 467
MspA1I	CMGCKG	1 cut(s)	842
MspR9I	CCNGG	5 cut(s)	348, 494, 523, 584, 641
MunI	CAATTG	1 cut(s)	914
MvaI	CCWGG	5 cut(s)	348, 494, 523, 584, 641
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	4 cut(s)	331, 454, 899, 1096
NdeII	GATC	3 cut(s)	301, 631, 1047
NlaIII	CATG	5 cut(s)	238, 466, 649, 768, 778
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	2 cut(s)	658, 835
NspI	RCATGY	1 cut(s)	768
NspV	TTCGAA	2 cut(s)	565, 609
OliI	CACNNNNGTG	1 cut(s)	150
PaeI	GCATGC	1 cut(s)	768
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	161, 428, 936, 1067
PflMI	CCANNNNNTGG	1 cut(s)	646
PfoI	TCCNGGA	2 cut(s)	346, 639
PkrI	GCNGC	4 cut(s)	86, 333, 696, 1101
PleI	GAGTC	4 cut(s)	232, 301, 386, 510
PpsI	GAGTC	4 cut(s)	232, 301, 386, 510
Psp1406I	AACGTT	1 cut(s)	405
Psp6I	CCWGG	5 cut(s)	346, 492, 521, 582, 639
PspFI	CCCAGC	1 cut(s)	874
PspGI	CCWGG	5 cut(s)	346, 492, 521, 582, 639
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	4 cut(s)	150, 153, 239, 467
SaqAI	TTAA	3 cut(s)	288, 401, 1156
SatI	GCNGC	4 cut(s)	85, 332, 695, 1100
Sau3AI	GATC	3 cut(s)	301, 631, 1047
Sau96I	GGNCC	1 cut(s)	551
SbfI	CCTGCAGG	1 cut(s)	268
SchI	GAGTC	4 cut(s)	233, 301, 386, 511
ScrFI	CCNGG	5 cut(s)	348, 494, 523, 584, 641
SdaI	CCTGCAGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	1125
SfaNI	GCATC	4 cut(s)	145, 198, 485, 681
SfcI	CTRYAG	1 cut(s)	264
SfuI	TTCGAA	2 cut(s)	565, 609
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	4 cut(s)	150, 153, 239, 467
SmlI	CTYRAG	4 cut(s)	24, 47, 326, 381
SmoI	CTYRAG	4 cut(s)	24, 47, 326, 381
SphI	GCATGC	1 cut(s)	768
Sse8387I	CCTGCAGG	1 cut(s)	268
Sse9I	AATT	7 cut(s)	14, 315, 362, 602, 706, 914, 1134
SsiI	CCGC	2 cut(s)	84, 747
SspI	AATATT	1 cut(s)	720
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	5 cut(s)	346, 492, 521, 582, 639
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	2 cut(s)	190, 408
TaqI	TCGA	5 cut(s)	114, 565, 609, 630, 756
TasI	AATT	7 cut(s)	14, 315, 362, 602, 706, 914, 1134
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	4 cut(s)	161, 428, 936, 1067
Tru1I	TTAA	3 cut(s)	288, 401, 1156
Tru9I	TTAA	3 cut(s)	288, 401, 1156
TseFI	GTSAC	2 cut(s)	658, 835
TseI	GCWGC	3 cut(s)	331, 694, 1099
Tsp45I	GTSAC	2 cut(s)	658, 835
TspDTI	ATGAA	4 cut(s)	81, 696, 845, 955
Van91I	CCANNNNNTGG	1 cut(s)	646
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	2 cut(s)	14, 362
XceI	RCATGY	1 cut(s)	768
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.