Prupe.8G237300_v2.0.a1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016085
Physical Location & Seq
Reverse (-)
20955842 .. 20957155
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G237300.1

Sequence Viewer

Length: 447 bp
ATGTCCGCCAAACGCTCCCGCATTGTTCACTCGTCGAGCTCCGGCGACACCGGCCTCCTTCCGCCGCGGTCGGCCGAGTCCTCCGATTCCTGGCTCCGCGTCCGTACGGCTTTCGGTAATGGCGCGAAGGCTCTGAAGCCGTCGCCGGAAGCTGTGCAGTCTCCGCCGTCGGTTCTGACGATGTCGTCGCCGGAGATTGTGACGATGGGACGCGAGGCGCAGGTCGATAAGTTCCTTGACCACTGCTACTTTTGTCGCCGGAGGCTCCCTCACAATGAGGACGTGTTCATGTGCGGCCCCTTTCGTGCATTTTGTTCCCCAGAGTGCCGTGACCAACAAGTTGACCTGGACAAGATAGCAGAGCAACCAAAGCAAGTACCTGTTCAACCAGTTAGAACAATGTACAGCATGACCAGCAATGTCAATGGATCGAAACCAACTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

149

Amino Acids

16.36

Weight (kDa)

8.93

Isoelectric Point (pI)

77.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016085)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63230 AT3G63230
fragaria_vesca FvH4_2g23180 FvH4_2g23180
prunus_persica Prupe.8G237300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0290431
rosa_laevigata RLG00000012219
rosa_roxburghii Rroxscaffold_7G00177070
rosa_rugosa Rorug06G0212700 Rorug06G0212700
rosa_samantha Rh6AG322700 Rh6BG330200 Rh6CG336300 Rh6DG323100
rosa_wichuraiana Rw6G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 184
Acc36I ACCTGC 1 cut(s) 211
AccII CGCG 4 cut(s) 67, 99, 125, 213
AciI CCGC 8 cut(s) 6, 19, 62, 65, 67, 97, 164, 294
AclWI GGATC 1 cut(s) 436
AcoI YGGCCR 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 3 cut(s) 106, 378, 404
AfiI CCNNNNNNNGG 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 1 cut(s) 386
AhlI ACTAGT 1 cut(s) 440
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 2 cut(s) 89, 345
AluBI AGCT 2 cut(s) 39, 152
AluI AGCT 2 cut(s) 39, 152
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 1 cut(s) 436
AoxI GGCC 3 cut(s) 52, 72, 295
AspLEI GCGC 2 cut(s) 125, 220
AspS9I GGNCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 41
BccI CCATC 1 cut(s) 199
BceAI ACGGC 4 cut(s) 123, 124, 151, 312
BciT130I CCWGG 2 cut(s) 91, 347
BcoDI GTCTC 1 cut(s) 165
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 1 cut(s) 441
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 2 cut(s) 65, 295
BlsI GCNGC 2 cut(s) 66, 296
Bme1390I CCNGG 2 cut(s) 91, 347
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 3 cut(s) 95, 266, 298
BmrFI CCNGG 2 cut(s) 91, 347
BplI GAGNNNNNCTC 2 cut(s) 253, 285
BsaJI CCNNGG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 424
BseBI CCWGG 2 cut(s) 91, 347
BseDI CCNNGG 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 389
BseX3I CGGCCG 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 4 cut(s) 67, 99, 125, 213
Bsh1285I CGRYCG 2 cut(s) 71, 75
BshFI GGCC 3 cut(s) 54, 74, 297
BsiEI CGRYCG 2 cut(s) 71, 75
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 5 cut(s) 42, 51, 146, 191, 259
BsiWI CGTACG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 3 cut(s) 54, 74, 297
Bsp1286I GDGCHC 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 1 cut(s) 428
BspACI CCGC 8 cut(s) 6, 19, 62, 65, 67, 97, 164, 294
BspANI GGCC 3 cut(s) 54, 74, 297
BspFNI CGCG 4 cut(s) 67, 99, 125, 213
BspLI GGNNCC 3 cut(s) 95, 266, 298
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 91, 347
BstAUI TGTACA 1 cut(s) 402
BstDSI CCRYGG 1 cut(s) 65
BstFNI CGCG 4 cut(s) 67, 99, 125, 213
BstHHI GCGC 2 cut(s) 125, 220
BstKTI GATC 1 cut(s) 431
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 1 cut(s) 428
BstMCI CGRYCG 2 cut(s) 71, 75
BstMWI GCNNNNNNNGC 4 cut(s) 51, 163, 370, 414
BstNI CCWGG 2 cut(s) 91, 347
BstSCI CCNGG 2 cut(s) 89, 345
BstUI CGCG 4 cut(s) 67, 99, 125, 213
BstZI CGGCCG 1 cut(s) 72
BsuRI GGCC 3 cut(s) 54, 74, 297
BtgI CCRYGG 1 cut(s) 65
BtrI CACGTC 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 211
CfoI GCGC 2 cut(s) 125, 220
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 296
Cfr42I CCGCGG 1 cut(s) 68
CseI GACGC 2 cut(s) 88, 219
Csp6I GTAC 3 cut(s) 105, 377, 403
CviAII CATG 2 cut(s) 289, 409
CviQI GTAC 3 cut(s) 105, 377, 403
DpnI GATC 1 cut(s) 430
DpnII GATC 1 cut(s) 428
DrdI GACNNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 72
EagI CGGCCG 1 cut(s) 72
EciI GGCGGA 2 cut(s) 51, 153
Ecl136II GAGCTC 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 41
Eco52I CGGCCG 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 39
EcoRII CCWGG 2 cut(s) 89, 345
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 2 cut(s) 292, 412
FaiI YATR 2 cut(s) 290, 410
FaqI GGGAC 1 cut(s) 222
FatI CATG 2 cut(s) 288, 408
FauI CCCGC 1 cut(s) 26
Fnu4HI GCNGC 2 cut(s) 65, 295
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 65, 295
FspBI CTAG 1 cut(s) 441
GlaI GCGC 2 cut(s) 124, 219
GluI GCNGC 2 cut(s) 65, 295
HaeIII GGCC 3 cut(s) 54, 74, 297
HapII CCGG 5 cut(s) 42, 51, 146, 191, 259
HgaI GACGC 2 cut(s) 88, 219
HhaI GCGC 2 cut(s) 125, 220
Hin1II CATG 2 cut(s) 292, 412
Hin6I GCGC 2 cut(s) 123, 218
HinP1I GCGC 2 cut(s) 123, 218
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 2 cut(s) 77, 86
HpaII CCGG 5 cut(s) 42, 51, 146, 191, 259
Hpy166II GTNNAC 2 cut(s) 28, 343
Hpy188I TCNGA 3 cut(s) 85, 135, 177
Hpy8I GTNNAC 2 cut(s) 28, 343
Hpy99I CGWCG 4 cut(s) 37, 145, 172, 190
HpyAV CCTTC 2 cut(s) 68, 121
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 2 cut(s) 157, 308
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 163, 370, 414
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 2 cut(s) 292, 412
HspAI GCGC 2 cut(s) 123, 218
KspI CCGCGG 1 cut(s) 68
Kzo9I GATC 1 cut(s) 428
LmnI GCTCC 4 cut(s) 20, 44, 99, 270
MaeI CTAG 1 cut(s) 441
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 2 cut(s) 199, 329
MalI GATC 1 cut(s) 430
MboI GATC 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 41
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 6 cut(s) 65, 91, 208, 255, 271, 279
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 5 cut(s) 42, 51, 146, 191, 259
MspR9I CCNGG 2 cut(s) 91, 347
MvaI CCWGG 2 cut(s) 91, 347
MvnI CGCG 4 cut(s) 67, 99, 125, 213
MwoI GCNNNNNNNGC 4 cut(s) 51, 163, 370, 414
NdeII GATC 1 cut(s) 428
NlaIII CATG 2 cut(s) 292, 412
NlaIV GGNNCC 3 cut(s) 95, 266, 298
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 199, 329
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PfeI GAWTC 1 cut(s) 86
Pfl23II CGTACG 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 181
PkrI GCNGC 2 cut(s) 66, 296
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 89, 345
PspGI CCWGG 2 cut(s) 89, 345
PspLI CGTACG 1 cut(s) 104
PspN4I GGNNCC 3 cut(s) 95, 266, 298
PspPI GGNCC 1 cut(s) 296
PsyI GACNNNGTC 1 cut(s) 181
RsaI GTAC 3 cut(s) 106, 378, 404
RsaNI GTAC 3 cut(s) 105, 377, 403
SacI GAGCTC 1 cut(s) 41
SacII CCGCGG 1 cut(s) 68
SatI GCNGC 2 cut(s) 65, 295
Sau3AI GATC 1 cut(s) 428
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 91, 347
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 41, 154, 225, 285, 348, 382
Sfr303I CCGCGG 1 cut(s) 68
SgrBI CCGCGG 1 cut(s) 68
SpeI ACTAGT 1 cut(s) 440
SsiI CCGC 8 cut(s) 6, 19, 62, 65, 67, 97, 164, 294
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 89, 345
TaiI ACGT 1 cut(s) 285
TaqI TCGA 3 cut(s) 35, 225, 431
TatI WGTACW 1 cut(s) 402
TauI GCSGC 2 cut(s) 67, 297
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 2 cut(s) 199, 329
Tsp45I GTSAC 2 cut(s) 199, 329
TspDTI ATGAA 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 248
Tth111I GACNNNGTC 1 cut(s) 181
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.