FvH4_2g23180

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016085
Physical Location & Seq
Reverse (-)
19009107 .. 19010252
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23180.t1

Sequence Viewer

Length: 450 bp
ATGCCTACGCCGACACCGGCGAAGCGTTCCCGGATTTGCAACTCGCCGAGCTCCGGAGATACCGGCGTGATCCGCCAGCTCCCGCCGAAAGCGCCGGAGCCGTCCGATCGCCGCTGCGCTGCTTTCGGAATTGTCGCCAAGCCTGTGAAGCCGTCGCCGAAGGAAACGCACAGAGAGCAGCCATCGCCGGCGATTTTGATGGTGTCGTCGCCGGAGATTGTGAGAGGGGAGCCAGCGGCGGCGTGTGTCGATCAGTTCCTTGACGAATGCTACTTTTGCCAGAAGAAGATCCCTCAAAACAGTGATGTGTTCATGTACGGACTATTTGGTGCATTTTGTTCGGAAGTGTGCCGATTCCAGCAAATTTACAAGGACAAGGTAGCAGAGCAAGCACTTGTTAAATCGACTAGAACCGCCGTCACCGGTGCCAAGAGCAATGTGAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

150

Amino Acids

16.2

Weight (kDa)

9.03

Isoelectric Point (pI)

61.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 84 - 126 8.8e-15 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016085)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63230 AT3G63230
fragaria_vesca FvH4_2g23180 FvH4_2g23180
prunus_persica Prupe.8G237300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0290431
rosa_laevigata RLG00000012219
rosa_roxburghii Rroxscaffold_7G00177070
rosa_rugosa Rorug06G0212700 Rorug06G0212700
rosa_samantha Rh6AG322700 Rh6BG330200 Rh6CG336300 Rh6DG323100
rosa_wichuraiana Rw6G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 425
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 6 cut(s) 73, 83, 112, 236, 239, 414
AclWI GGATC 2 cut(s) 64, 283
AcsI RAATTY 1 cut(s) 363
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 53
AgeI ACCGGT 1 cut(s) 422
AluBI AGCT 2 cut(s) 51, 79
AluI AGCT 2 cut(s) 51, 79
Alw21I GWGCWC 1 cut(s) 53
AlwI GGATC 2 cut(s) 64, 283
Aor13HI TCCGGA 1 cut(s) 53
ApeKI GCWGC 3 cut(s) 114, 119, 178
ApoI RAATTY 1 cut(s) 363
AsiGI ACCGGT 1 cut(s) 422
AspLEI GCGC 2 cut(s) 94, 119
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 412
BaeI ACNNNNGTAYC 2 cut(s) 51, 84
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 3 cut(s) 101, 106, 190
BccI CCATC 2 cut(s) 190, 193
BceAI ACGGC 3 cut(s) 85, 136, 401
BcgI CGANNNNNNTGC 2 cut(s) 321, 355
BcnI CCSGG 1 cut(s) 31
BfaI CTAG 1 cut(s) 408
BfoI RGCGCY 1 cut(s) 95
BisI GCNGC 6 cut(s) 112, 115, 120, 179, 237, 240
BlsI GCNGC 6 cut(s) 113, 116, 121, 180, 238, 241
Bme1390I CCNGG 1 cut(s) 31
BmiI GGNNCC 3 cut(s) 99, 231, 427
BmrFI CCNGG 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 31
BsaWI WCCGGW 2 cut(s) 53, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 4 cut(s) 16, 62, 187, 422
Bse3DI GCAATG 1 cut(s) 442
BseAI TCCGGA 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 442
BseXI GCAGC 3 cut(s) 101, 106, 190
Bsh1285I CGRYCG 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 425
BshTI ACCGGT 1 cut(s) 422
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 8 cut(s) 17, 31, 54, 63, 95, 188, 212, 423
BslI CCNNNNNNNGG 1 cut(s) 53
BsmI GAATGC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 53
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 4 cut(s) 69, 106, 250, 288
BspACI CCGC 6 cut(s) 73, 83, 112, 236, 239, 414
BspEI TCCGGA 1 cut(s) 53
BspLI GGNNCC 3 cut(s) 99, 231, 427
BspPI GGATC 2 cut(s) 64, 283
BspT107I GGYRCC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 442
BsrFI RCCGGY 4 cut(s) 16, 62, 187, 422
BssAI RCCGGY 4 cut(s) 16, 62, 187, 422
BssMI GATC 4 cut(s) 69, 106, 250, 288
Bst4CI ACNGT 1 cut(s) 302
BstC8I GCNNGC 4 cut(s) 77, 189, 234, 390
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 2 cut(s) 94, 119
BstKTI GATC 4 cut(s) 72, 109, 253, 291
BstMBI GATC 4 cut(s) 69, 106, 250, 288
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 7 cut(s) 72, 91, 148, 175, 184, 276, 389
BstSCI CCNGG 1 cut(s) 29
BstV1I GCAGC 3 cut(s) 101, 106, 190
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BtgZI GCGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 4 cut(s) 77, 189, 234, 390
CfoI GCGC 2 cut(s) 94, 119
Cfr10I RCCGGY 4 cut(s) 16, 62, 187, 422
Csp6I GTAC 1 cut(s) 316
CspAI ACCGGT 1 cut(s) 422
CviAII CATG 1 cut(s) 313
CviJI RGCY 7 cut(s) 51, 79, 100, 142, 151, 181, 232
CviKI_1 RGCY 7 cut(s) 51, 79, 100, 142, 151, 181, 232
CviQI GTAC 1 cut(s) 316
DpnI GATC 4 cut(s) 71, 108, 252, 290
DpnII GATC 4 cut(s) 69, 106, 250, 288
EciI GGCGGA 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 1 cut(s) 316
FaiI YATR 1 cut(s) 314
FatI CATG 1 cut(s) 312
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 6 cut(s) 112, 115, 120, 179, 237, 240
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 6 cut(s) 112, 115, 120, 179, 237, 240
FspBI CTAG 1 cut(s) 408
GlaI GCGC 2 cut(s) 93, 118
GluI GCNGC 6 cut(s) 112, 115, 120, 179, 237, 240
HaeII RGCGCY 1 cut(s) 95
HapII CCGG 8 cut(s) 17, 31, 54, 63, 95, 188, 212, 423
HhaI GCGC 2 cut(s) 94, 119
Hin1II CATG 1 cut(s) 316
Hin6I GCGC 2 cut(s) 92, 117
HinP1I GCGC 2 cut(s) 92, 117
HinfI GANTC 1 cut(s) 354
HpaII CCGG 8 cut(s) 17, 31, 54, 63, 95, 188, 212, 423
HphI GGTGA 1 cut(s) 412
Hpy188I TCNGA 3 cut(s) 106, 128, 343
Hpy188III TCNNGA 1 cut(s) 54
Hpy99I CGWCG 2 cut(s) 157, 211
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 39, 332
HpyF10VI GCNNNNNNNGC 7 cut(s) 72, 91, 148, 175, 184, 276, 389
Hsp92II CATG 1 cut(s) 316
HspAI GCGC 2 cut(s) 92, 117
Kpn2I TCCGGA 1 cut(s) 53
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Kzo9I GATC 4 cut(s) 69, 106, 250, 288
LmnI GCTCC 4 cut(s) 56, 84, 97, 229
Lsp1109I GCAGC 3 cut(s) 101, 106, 190
MaeI CTAG 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 418
MalI GATC 4 cut(s) 71, 108, 252, 290
MboI GATC 4 cut(s) 69, 106, 250, 288
MboII GAAGA 2 cut(s) 295, 298
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 2 cut(s) 129, 363
MnlI CCTC 2 cut(s) 218, 303
MreI CGCCGGCG 1 cut(s) 187
MroI TCCGGA 1 cut(s) 53
MroNI GCCGGC 1 cut(s) 187
MseI TTAA 1 cut(s) 399
MspA1I CMGCKG 2 cut(s) 114, 236
MspI CCGG 8 cut(s) 17, 31, 54, 63, 95, 188, 212, 423
MspR9I CCNGG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 272
MwoI GCNNNNNNNGC 7 cut(s) 72, 91, 148, 175, 184, 276, 389
NaeI GCCGGC 1 cut(s) 189
NciI CCSGG 1 cut(s) 31
NdeII GATC 4 cut(s) 69, 106, 250, 288
NgoMIV GCCGGC 1 cut(s) 187
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 3 cut(s) 99, 231, 427
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 418
PctI GAATGC 1 cut(s) 272
PdiI GCCGGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 354
PfoI TCCNGGA 1 cut(s) 29
PinAI ACCGGT 1 cut(s) 422
PkrI GCNGC 6 cut(s) 113, 116, 121, 180, 238, 241
Ple19I CGATCG 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 53
PspN4I GGNNCC 3 cut(s) 99, 231, 427
PsuI RGATCY 1 cut(s) 288
PvuI CGATCG 1 cut(s) 109
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SacI GAGCTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 6 cut(s) 112, 115, 120, 179, 237, 240
Sau3AI GATC 4 cut(s) 69, 106, 250, 288
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 1 cut(s) 53
SetI ASST 3 cut(s) 53, 81, 381
SgrAI CRCCGGYG 3 cut(s) 16, 187, 422
Sse9I AATT 2 cut(s) 129, 363
SsiI CCGC 6 cut(s) 73, 83, 112, 236, 239, 414
SspMI CTAG 1 cut(s) 408
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 302
TaqI TCGA 2 cut(s) 249, 404
TasI AATT 2 cut(s) 129, 363
TauI GCSGC 3 cut(s) 114, 239, 242
TfiI GAWTC 1 cut(s) 354
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 3 cut(s) 114, 119, 178
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 301
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 307
XapI RAATTY 1 cut(s) 363
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.