RchiOBHm_Chr6g0290431

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016085
Physical Location & Seq
Reverse (-)
53447252 .. 53448085
834 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26057

Sequence Viewer

Length: 447 bp
ATGCCTACGCGGGCGAAGCGGACCAGGATTTGCAGCTCGCCTAGCTCCGGGGAGGCCGGCGTGATCCGCCAGCTCCCGCCGAAGGAGCCGGAGCAGTCCAATTGCCGGTTCGCGGCTTTCGGAAATGTTGTCAGTTCTGTGAAGCCATCGCGGGAGGAAGCACGTAGAGATCATGCTCGGCCGGCGATTCTGACGGTGTCGTCGCCGGAGATTGTTTTTATGGAGCCCGCGGCGGCGCAGGTTGATCAGTTCCTCGACGAATGCTACTTTTGCCAGAAGAGGATCCCTCAAAACGCTGATGTGTTCATGTACGGACTTTTTGGTGCATTCTGTTCGGAAGTGTGCCGTTTCCAGCAAATTTACAAGGACAAGGTAGCGGAGCAAGCACTTGTTAAATCAACTAGAACCGCCATCAACGGCACGAAGAGCAATGTGAATGGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

148

Amino Acids

16.4

Weight (kDa)

9.0

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 79 - 124 1.5e-15 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016085)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63230 AT3G63230
fragaria_vesca FvH4_2g23180 FvH4_2g23180
prunus_persica Prupe.8G237300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0290431
rosa_laevigata RLG00000012219
rosa_roxburghii Rroxscaffold_7G00177070
rosa_rugosa Rorug06G0212700 Rorug06G0212700
rosa_samantha Rh6AG322700 Rh6BG330200 Rh6CG336300 Rh6DG323100
rosa_wichuraiana Rw6G027980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 199
Acc36I ACCTGC 1 cut(s) 229
AccII CGCG 4 cut(s) 10, 113, 151, 230
AclWI GGATC 3 cut(s) 58, 277, 290
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 1 cut(s) 357
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 4 cut(s) 47, 82, 105, 112
AjnI CCWGG 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 3 cut(s) 36, 45, 73
AluI AGCT 3 cut(s) 36, 45, 73
AlwI GGATC 3 cut(s) 58, 277, 290
AoxI GGCC 2 cut(s) 54, 179
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 357
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 49
AvaII GGWCC 1 cut(s) 21
BamHI GGATCC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 45
BccI CCATC 2 cut(s) 154, 419
BceAI ACGGC 2 cut(s) 330, 433
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BciT130I CCWGG 1 cut(s) 25
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 1 cut(s) 49
BfaI CTAG 2 cut(s) 42, 402
BfuAI ACCTGC 1 cut(s) 229
BisI GCNGC 4 cut(s) 34, 114, 231, 234
BlsI GCNGC 4 cut(s) 35, 115, 232, 235
Bme1390I CCNGG 2 cut(s) 25, 49
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 3 cut(s) 87, 225, 284
BmrFI CCNGG 2 cut(s) 25, 49
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BpuMI CCSGG 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 48, 228
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 82, 105, 112
Bse118I RCCGGY 3 cut(s) 56, 105, 181
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 48, 228
BseLI CCNNNNNNNGG 4 cut(s) 47, 82, 105, 112
BseMI GCAATG 1 cut(s) 436
BseX3I CGGCCG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 45
Bsh1236I CGCG 4 cut(s) 10, 113, 151, 230
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 2 cut(s) 56, 181
BsiEI CGRYCG 1 cut(s) 182
BsiSI CCGG 6 cut(s) 48, 57, 89, 106, 182, 206
BslI CCNNNNNNNGG 4 cut(s) 47, 82, 105, 112
BsmI GAATGC 2 cut(s) 266, 326
BsnI GGCC 2 cut(s) 56, 181
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 4 cut(s) 63, 169, 244, 282
BspANI GGCC 2 cut(s) 56, 181
BspFNI CGCG 4 cut(s) 10, 113, 151, 230
BspHI TCATGA 1 cut(s) 443
BspLI GGNNCC 3 cut(s) 87, 225, 284
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 3 cut(s) 58, 277, 290
BspQI GCTCTTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 436
BsrFI RCCGGY 3 cut(s) 56, 105, 181
BssAI RCCGGY 3 cut(s) 56, 105, 181
BssECI CCNNGG 2 cut(s) 48, 228
BssMI GATC 4 cut(s) 63, 169, 244, 282
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 272, 419
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 7 cut(s) 12, 38, 58, 71, 183, 228, 384
BstDSI CCRYGG 1 cut(s) 228
BstFNI CGCG 4 cut(s) 10, 113, 151, 230
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 4 cut(s) 66, 172, 247, 285
BstMBI GATC 4 cut(s) 63, 169, 244, 282
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 8 cut(s) 16, 42, 66, 85, 182, 270, 383, 426
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 23, 47
BstUI CGCG 4 cut(s) 10, 113, 151, 230
BstV1I GCAGC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BstZI CGGCCG 1 cut(s) 179
BsuRI GGCC 2 cut(s) 56, 181
BtgI CCRYGG 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 7 cut(s) 12, 38, 58, 71, 183, 228, 384
CciI TCATGA 1 cut(s) 443
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 3 cut(s) 56, 105, 181
Cfr13I GGNCC 1 cut(s) 21
Cfr42I CCGCGG 1 cut(s) 231
Csp6I GTAC 1 cut(s) 310
CviAII CATG 3 cut(s) 173, 307, 444
CviQI GTAC 1 cut(s) 310
DpnI GATC 4 cut(s) 65, 171, 246, 284
DpnII GATC 4 cut(s) 63, 169, 244, 282
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 179
EagI CGGCCG 1 cut(s) 179
Eam1104I CTCTTC 2 cut(s) 272, 419
EarI CTCTTC 2 cut(s) 272, 419
EciI GGCGGA 1 cut(s) 56
EclXI CGGCCG 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 21
Eco52I CGGCCG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 3 cut(s) 176, 310, 447
FaiI YATR 4 cut(s) 174, 221, 308, 445
FatI CATG 3 cut(s) 172, 306, 443
FauI CCCGC 4 cut(s) 3, 84, 144, 235
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 4 cut(s) 34, 114, 231, 234
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 4 cut(s) 34, 114, 231, 234
FspBI CTAG 2 cut(s) 42, 402
GlaI GCGC 1 cut(s) 237
GluI GCNGC 4 cut(s) 34, 114, 231, 234
HaeIII GGCC 2 cut(s) 56, 181
HapII CCGG 6 cut(s) 48, 57, 89, 106, 182, 206
HhaI GCGC 1 cut(s) 238
Hin1II CATG 3 cut(s) 176, 310, 447
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 1 cut(s) 187
HpaII CCGG 6 cut(s) 48, 57, 89, 106, 182, 206
Hpy188I TCNGA 3 cut(s) 122, 192, 337
Hpy188III TCNNGA 1 cut(s) 444
Hpy99I CGWCG 2 cut(s) 205, 260
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 33, 326
HpyF10VI GCNNNNNNNGC 8 cut(s) 16, 42, 66, 85, 182, 270, 383, 426
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 3 cut(s) 176, 310, 447
HspAI GCGC 1 cut(s) 236
KroI GCCGGC 2 cut(s) 56, 181
KroNI GCCGGC 2 cut(s) 58, 183
Ksp22I TGATCA 1 cut(s) 244
KspI CCGCGG 1 cut(s) 231
Kzo9I GATC 4 cut(s) 63, 169, 244, 282
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 6 cut(s) 50, 78, 85, 91, 223, 379
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 2 cut(s) 42, 402
MaeII ACGT 1 cut(s) 163
MalI GATC 4 cut(s) 65, 171, 246, 284
MboI GATC 4 cut(s) 63, 169, 244, 282
MboII GAAGA 2 cut(s) 289, 436
MfeI CAATTG 1 cut(s) 100
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 2 cut(s) 100, 357
MnlI CCTC 5 cut(s) 46, 148, 263, 273, 297
MroNI GCCGGC 2 cut(s) 56, 181
MseI TTAA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 6 cut(s) 48, 57, 89, 106, 182, 206
MspR9I CCNGG 2 cut(s) 25, 49
MunI CAATTG 1 cut(s) 100
Mva1269I GAATGC 2 cut(s) 266, 326
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 4 cut(s) 10, 113, 151, 230
MwoI GCNNNNNNNGC 8 cut(s) 16, 42, 66, 85, 182, 270, 383, 426
NaeI GCCGGC 2 cut(s) 58, 183
NciI CCSGG 1 cut(s) 49
NdeII GATC 4 cut(s) 63, 169, 244, 282
NgoMIV GCCGGC 2 cut(s) 56, 181
NlaIII CATG 3 cut(s) 176, 310, 447
NlaIV GGNNCC 3 cut(s) 87, 225, 284
NmeAIII GCCGAG 1 cut(s) 157
PagI TCATGA 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 419
PctI GAATGC 2 cut(s) 266, 326
PdiI GCCGGC 2 cut(s) 58, 183
PfeI GAWTC 1 cut(s) 187
PflFI GACNNNGTC 1 cut(s) 196
PkrI GCNGC 4 cut(s) 35, 115, 232, 235
Ppu21I YACGTR 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 3 cut(s) 87, 225, 284
PspPI GGNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 196
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SacII CCGCGG 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 4 cut(s) 34, 114, 231, 234
Sau3AI GATC 4 cut(s) 63, 169, 244, 282
Sau96I GGNCC 1 cut(s) 21
ScrFI CCNGG 2 cut(s) 25, 49
SduI GDGCHC 1 cut(s) 228
SetI ASST 6 cut(s) 38, 47, 75, 166, 243, 375
Sfr303I CCGCGG 1 cut(s) 231
SgrBI CCGCGG 1 cut(s) 231
SinI GGWCC 1 cut(s) 21
Sse9I AATT 2 cut(s) 100, 357
SspMI CTAG 2 cut(s) 42, 402
StyD4I CCNGG 2 cut(s) 23, 47
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 100, 357
TauI GCSGC 3 cut(s) 116, 233, 236
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 1 cut(s) 295
TspGWI ACGGA 1 cut(s) 327
Tth111I GACNNNGTC 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 21
XapI RAATTY 1 cut(s) 357
XspI CTAG 2 cut(s) 42, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.