AT4G02500

xyloglucan 6-xylosyltransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
1101378 .. 1103612
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02500.1

Sequence Viewer

Length: 1386 bp
ATGATTGAGAGGTGTTTAGGAGCTTACCGGTGCCGGAGAATCCAAAGAGCTTTACGCCAATTAAAGGTAACGATTCTCTGTCTTCTTCTTACCGTTGTTGTCCTACGTAGCACAATCGGCGCCGGTAAATTCGGAACTCCGGAGCAAGATCTTGACGAGATCCGTCAACATTTCCACGCACGCAAACGAGGTGAGCCTCACCGTGTCCTCGAAGAAATTCAGACCGGAGGAGATTCTTCTTCCGGTGACGGTGGAGGTAATTCCGGTGGGAGTAATAACTACGAGACGTTTGACATCAACAAGATTTTCGTTGACGAAGGTGAAGAAGAGAAACCCGACCCGAATAAACCTTACACTCTCGGACCCAAGATATCAGATTGGGATGAGCAGAGATCTGATTGGTTAGCTAAGAACCCTAGCTTCCCTAATTTCATCGGACCTAACAAGCCACGTGTTCTTTTGGTGACTGGTTCGGCGCCAAAACCATGTGAGAATCCTGTCGGTGATCATTACCTCTTGAAATCGATCAAGAACAAGATCGATTACTGTAGGTTACATGGGATCGAGATCTTCTACAACATGGCTCTTCTCGATGCAGAGATGGCTGGTTTTTGGGCAAAGCTTCCATTGATTAGGAAGCTTTTGTTGTCACATCCTGAGATTGAGTTTCTTTGGTGGATGGATAGTGATGCTATGTTTACAGATATGGCTTTTGAGCTTCCATGGGAGAGGTATAAAGATTACAATCTGGTGATGCATGGATGGAATGAGATGGTTTATGATCAGAAGAATTGGATTGGGTTGAATACAGGGAGTTTCTTGCTTAGGAACAATCAATGGGCACTTGATTTGCTTGATACTTGGGCTCCCATGGGTCCTAAAGGGAAGATCCGTGAAGAAGCGGGTAAGGTTTTGACCCGTGAGCTCAAGGATAGACCGGTGTTCGAAGCTGATGATCAGTCTGCTATGGTTTATCTGTTGGCTACTCAGCGAGACGCTTGGGGCAATAAGGTGTACCTAGAAAGTGGATACTATCTTCACGGTTACTGGGGGATTCTTGTGGACAGATATGAAGAAATGATAGAAAACTACCACCCGGGTCTAGGAGATCACAGATGGCCATTGGTGACTCACTTTGTCGGTTGCAAACCGTGTGGGAAATTTGGTGATTACCCGGTGGAACGGTGTCTAAAACAAATGGACAGAGCCTTTAACTTTGGAGATAACCAGATTCTGCAAATCTATGGTTTCACTCACAAATCTTTGGCTAGTCGTAAAGTCAAGAGAGTGCGGAACGAGACTAGCAATCCGTTGGAGATGAAAGACGAGCTCGGGTTGCTTCATCCGGCGTTTAAGGCGGTTAAGGTACAAACCAATCAAGTTTGA

Protein Analysis

461

Amino Acids

53.09

Weight (kDa)

6.52

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 149 - 388 3.3e-67 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 30, 119, 475
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 3 cut(s) 902, 1291, 1358
AclWI GGATC 3 cut(s) 154, 569, 883
AcoI YGGCCR 1 cut(s) 1118
AcsI RAATTY 3 cut(s) 128, 216, 1160
AcvI CACGTG 1 cut(s) 452
AcyI GRCGYC 2 cut(s) 120, 476
AfaI GTAC 2 cut(s) 1016, 1368
AfiI CCNNNNNNNGG 2 cut(s) 64, 1103
AflIII ACRYGT 1 cut(s) 451
AgeI ACCGGT 2 cut(s) 27, 937
AgsI TTSAA 2 cut(s) 520, 805
Alw21I GWGCWC 2 cut(s) 927, 1332
Alw26I GTCTC 3 cut(s) 278, 987, 1292
AlwI GGATC 3 cut(s) 154, 569, 883
AlwNI CAGNNNCTG 1 cut(s) 1234
Ama87I CYCGRG 2 cut(s) 1096, 1331
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 1 cut(s) 1118
ApoI RAATTY 3 cut(s) 128, 216, 1160
AsiGI ACCGGT 2 cut(s) 27, 937
Asp700I GAANNNNTTC 1 cut(s) 216
AspLEI GCGC 2 cut(s) 122, 478
AspS9I GGNCC 3 cut(s) 362, 437, 875
AsuC2I CCSGG 3 cut(s) 1097, 1098, 1175
AsuHPI GGTGA 9 cut(s) 191, 203, 257, 332, 475, 515, 763, 1138, 1178
AsuII TTCGAA 1 cut(s) 945
AvaI CYCGRG 2 cut(s) 1096, 1331
AvaII GGWCC 3 cut(s) 362, 437, 875
BaeGI GKGCMC 1 cut(s) 844
BalI TGGCCA 1 cut(s) 1120
BanI GGYRCC 3 cut(s) 30, 119, 475
BanII GRGCYC 3 cut(s) 868, 927, 1332
BbrPI CACGTG 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 2 cut(s) 927, 1332
BccI CCATC 5 cut(s) 595, 673, 756, 766, 1110
BciVI GTATCC 1 cut(s) 1022
BclI TGATCA 3 cut(s) 505, 781, 955
BcnI CCSGG 3 cut(s) 1097, 1098, 1175
BcoDI GTCTC 3 cut(s) 278, 987, 1292
BfaI CTAG 5 cut(s) 417, 1019, 1103, 1269, 1302
BfmI CTRYAG 1 cut(s) 547
BfoI RGCGCY 2 cut(s) 123, 479
BfuI GTATCC 1 cut(s) 1022
BglII AGATCT 3 cut(s) 148, 392, 567
Bme1390I CCNGG 3 cut(s) 1097, 1098, 1175
Bme18I GGWCC 3 cut(s) 362, 437, 875
BmeT110I CYCGRG 2 cut(s) 1096, 1331
BmgT120I GGNCC 3 cut(s) 362, 437, 875
BmiI GGNNCC 6 cut(s) 32, 121, 364, 477, 867, 876
BmrFI CCNGG 3 cut(s) 1097, 1098, 1175
BmrI ACTGGG 1 cut(s) 1057
BmsI GCATC 3 cut(s) 583, 679, 744
BmuI ACTGGG 1 cut(s) 1057
BpiI GAAGAC 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 824
Bpu14I TTCGAA 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 3 cut(s) 1097, 1098, 1175
Bsa29I ATCGAT 2 cut(s) 524, 540
BsaAI YACGTR 2 cut(s) 107, 452
BsaBI GATNNNNATC 2 cut(s) 566, 744
BsaHI GRCGYC 2 cut(s) 120, 476
BsaJI CCNNGG 3 cut(s) 722, 870, 1096
BsaWI WCCGGW 6 cut(s) 27, 139, 224, 242, 263, 937
BsaXI ACNNNNNCTCC 2 cut(s) 850, 880
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 1103
Bse118I RCCGGY 3 cut(s) 27, 122, 937
Bse1I ACTGG 2 cut(s) 472, 1052
Bse8I GATNNNNATC 2 cut(s) 566, 744
BseAI TCCGGA 1 cut(s) 139
BseCI ATCGAT 2 cut(s) 524, 540
BseDI CCNNGG 3 cut(s) 722, 870, 1096
BseGI GGATG 5 cut(s) 388, 652, 684, 767, 1342
BseJI GATNNNNATC 2 cut(s) 566, 744
BseLI CCNNNNNNNGG 2 cut(s) 64, 1103
BseMII CTCAG 2 cut(s) 648, 1001
BseNI ACTGG 2 cut(s) 472, 1052
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 844
BshFI GGCC 1 cut(s) 1120
BshNI GGYRCC 3 cut(s) 30, 119, 475
BshTI ACCGGT 2 cut(s) 27, 937
BshVI ATCGAT 2 cut(s) 524, 540
BsiHKAI GWGCWC 2 cut(s) 927, 1332
BsiHKCI CYCGRG 2 cut(s) 1096, 1331
BslI CCNNNNNNNGG 2 cut(s) 64, 1103
BsmAI GTCTC 3 cut(s) 278, 987, 1292
BsmBI CGTCTC 2 cut(s) 278, 987
BsnI GGCC 1 cut(s) 1120
BsoBI CYCGRG 2 cut(s) 1096, 1331
Bsp119I TTCGAA 1 cut(s) 945
Bsp1286I GDGCHC 4 cut(s) 844, 868, 927, 1332
Bsp13I TCCGGA 1 cut(s) 139
Bsp19I CCATGG 2 cut(s) 722, 870
BspACI CCGC 3 cut(s) 902, 1291, 1358
BspANI GGCC 1 cut(s) 1120
BspCNI CTCAG 2 cut(s) 649, 1000
BspDI ATCGAT 2 cut(s) 524, 540
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 6 cut(s) 32, 121, 364, 477, 867, 876
BspPI GGATC 3 cut(s) 154, 569, 883
BspQI GCTCTTC 1 cut(s) 591
BspT104I TTCGAA 1 cut(s) 945
BspT107I GGYRCC 3 cut(s) 30, 119, 475
BsrFI RCCGGY 3 cut(s) 27, 122, 937
BsrI ACTGG 2 cut(s) 472, 1052
BssAI RCCGGY 3 cut(s) 27, 122, 937
BssECI CCNNGG 3 cut(s) 722, 870, 1096
BssNI GRCGYC 2 cut(s) 120, 476
BssT1I CCWWGG 2 cut(s) 722, 870
Bst4CI ACNGT 7 cut(s) 94, 203, 251, 548, 1043, 1152, 1185
Bst6I CTCTTC 2 cut(s) 321, 591
BstACI GRCGYC 2 cut(s) 120, 476
BstBAI YACGTR 2 cut(s) 107, 452
BstBI TTCGAA 1 cut(s) 945
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 4 cut(s) 408, 657, 824, 987
BstDSI CCRYGG 2 cut(s) 722, 870
BstF5I GGATG 5 cut(s) 388, 652, 684, 767, 1342
BstH2I RGCGCY 2 cut(s) 123, 479
BstHHI GCGC 2 cut(s) 122, 478
BstMAI GTCTC 3 cut(s) 278, 987, 1292
BstMWI GCNNNNNNNGC 4 cut(s) 117, 602, 1336, 1355
BstSCI CCNGG 3 cut(s) 1095, 1096, 1173
BstSFI CTRYAG 1 cut(s) 547
BstSLI GKGCMC 1 cut(s) 844
BstSNI TACGTA 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 5 cut(s) 148, 159, 392, 567, 888
BstYI RGATCY 5 cut(s) 148, 159, 392, 567, 888
Bsu15I ATCGAT 2 cut(s) 524, 540
BsuI GTATCC 1 cut(s) 1022
BsuRI GGCC 1 cut(s) 1120
BsuTUI ATCGAT 2 cut(s) 524, 540
BtgI CCRYGG 2 cut(s) 722, 870
BtsCI GGATG 5 cut(s) 388, 652, 684, 767, 1342
Cac8I GCNNGC 1 cut(s) 181
CaiI CAGNNNCTG 1 cut(s) 1234
CfoI GCGC 2 cut(s) 122, 478
Cfr10I RCCGGY 3 cut(s) 27, 122, 937
Cfr13I GGNCC 3 cut(s) 362, 437, 875
Cfr9I CCCGGG 1 cut(s) 1096
ClaI ATCGAT 2 cut(s) 524, 540
CseI GACGC 1 cut(s) 1004
Csp6I GTAC 2 cut(s) 1015, 1367
CspAI ACCGGT 2 cut(s) 27, 937
CspCI CAANNNNNGTGG 2 cut(s) 1135, 1170
CviAII CATG 6 cut(s) 486, 557, 580, 723, 758, 871
CviQI GTAC 2 cut(s) 1015, 1367
DdeI CTNAG 4 cut(s) 408, 657, 824, 987
DinI GGCGCC 2 cut(s) 121, 477
EaeI YGGCCR 1 cut(s) 1118
Eam1104I CTCTTC 2 cut(s) 321, 591
EarI CTCTTC 2 cut(s) 321, 591
Ecl136II GAGCTC 2 cut(s) 925, 1330
Eco105I TACGTA 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 722, 870
Eco24I GRGCYC 3 cut(s) 868, 927, 1332
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 3 cut(s) 362, 437, 875
Eco53kI GAGCTC 2 cut(s) 925, 1330
Eco72I CACGTG 1 cut(s) 452
Eco88I CYCGRG 2 cut(s) 1096, 1331
EcoICRI GAGCTC 2 cut(s) 925, 1330
EcoO109I RGGNCCY 1 cut(s) 875
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 722, 870
EcoT22I ATGCAT 1 cut(s) 759
EcoT38I GRGCYC 3 cut(s) 868, 927, 1332
EgeI GGCGCC 2 cut(s) 121, 477
EheI GGCGCC 2 cut(s) 121, 477
ErhI CCWWGG 2 cut(s) 722, 870
Esp3I CGTCTC 2 cut(s) 278, 987
FaeI CATG 6 cut(s) 489, 560, 583, 726, 761, 874
FatI CATG 6 cut(s) 485, 556, 579, 722, 757, 870
FauI CCCGC 1 cut(s) 895
FbaI TGATCA 3 cut(s) 505, 781, 955
FokI GGATG 5 cut(s) 395, 639, 691, 774, 1329
FriOI GRGCYC 3 cut(s) 868, 927, 1332
FspBI CTAG 5 cut(s) 417, 1019, 1103, 1269, 1302
GlaI GCGC 2 cut(s) 121, 477
HaeII RGCGCY 2 cut(s) 123, 479
HaeIII GGCC 1 cut(s) 1120
HgaI GACGC 1 cut(s) 1004
HhaI GCGC 2 cut(s) 122, 478
Hin1I GRCGYC 2 cut(s) 120, 476
Hin1II CATG 6 cut(s) 489, 560, 583, 726, 761, 874
Hin6I GCGC 2 cut(s) 120, 476
HinP1I GCGC 2 cut(s) 120, 476
HincII GTYRAC 2 cut(s) 167, 313
HindII GTYRAC 2 cut(s) 167, 313
HindIII AAGCTT 2 cut(s) 620, 638
HinfI GANTC 7 cut(s) 39, 73, 233, 493, 1054, 1129, 1231
HphI GGTGA 9 cut(s) 191, 203, 257, 332, 475, 515, 763, 1138, 1178
Hpy166II GTNNAC 5 cut(s) 167, 313, 699, 1015, 1063
Hpy188I TCNGA 7 cut(s) 134, 222, 362, 376, 397, 437, 786
Hpy188III TCNNGA 8 cut(s) 140, 152, 517, 529, 565, 590, 656, 1282
Hpy8I GTNNAC 5 cut(s) 167, 313, 699, 1015, 1063
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 7 cut(s) 94, 203, 251, 548, 1043, 1152, 1185
HpyCH4IV ACGT 3 cut(s) 106, 287, 451
HpyCH4V TGCA 4 cut(s) 596, 757, 1146, 1237
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 602, 1336, 1355
HpyF3I CTNAG 4 cut(s) 408, 657, 824, 987
HpySE526I ACGT 3 cut(s) 106, 287, 451
Hsp92I GRCGYC 2 cut(s) 120, 476
Hsp92II CATG 6 cut(s) 489, 560, 583, 726, 761, 874
HspAI GCGC 2 cut(s) 120, 476
KasI GGCGCC 2 cut(s) 119, 475
Kpn2I TCCGGA 1 cut(s) 139
Ksp22I TGATCA 3 cut(s) 505, 781, 955
LguI GCTCTTC 1 cut(s) 591
LmnI GCTCC 3 cut(s) 20, 142, 871
LweI GCATC 3 cut(s) 583, 679, 744
MaeI CTAG 5 cut(s) 417, 1019, 1103, 1269, 1302
MaeII ACGT 3 cut(s) 106, 287, 451
MaeIII GTNAC 7 cut(s) 67, 245, 463, 552, 648, 1043, 1126
MflI RGATCY 5 cut(s) 148, 159, 392, 567, 888
MhlI GDGCHC 4 cut(s) 844, 868, 927, 1332
MlsI TGGCCA 1 cut(s) 1120
MluCI AATT 7 cut(s) 59, 128, 216, 259, 427, 790, 1160
MluNI TGGCCA 1 cut(s) 1120
Mly113I GGCGCC 2 cut(s) 120, 476
MlyI GAGTC 1 cut(s) 1123
MmeI TCCRAC 1 cut(s) 1293
MnlI CCTC 8 cut(s) 3, 182, 207, 218, 221, 248, 524, 723
Mox20I TGGCCA 1 cut(s) 1120
Mph1103I ATGCAT 1 cut(s) 759
MroI TCCGGA 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 216
MscI TGGCCA 1 cut(s) 1120
MseI TTAA 4 cut(s) 62, 1212, 1353, 1362
Msp20I TGGCCA 1 cut(s) 1120
MspR9I CCNGG 3 cut(s) 1097, 1098, 1175
MwoI GCNNNNNNNGC 4 cut(s) 117, 602, 1336, 1355
NarI GGCGCC 2 cut(s) 120, 476
NciI CCSGG 3 cut(s) 1097, 1098, 1175
NcoI CCATGG 2 cut(s) 722, 870
NlaIII CATG 6 cut(s) 489, 560, 583, 726, 761, 874
NlaIV GGNNCC 6 cut(s) 32, 121, 364, 477, 867, 876
NmuCI GTSAC 4 cut(s) 245, 463, 648, 1126
NsiI ATGCAT 1 cut(s) 759
NspV TTCGAA 1 cut(s) 945
PciSI GCTCTTC 1 cut(s) 591
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 6 cut(s) 39, 73, 233, 493, 1054, 1231
PinAI ACCGGT 2 cut(s) 27, 937
PleI GAGTC 1 cut(s) 1123
PluTI GGCGCC 2 cut(s) 123, 479
PmaCI CACGTG 1 cut(s) 452
PmlI CACGTG 1 cut(s) 452
PpsI GAGTC 1 cut(s) 1123
Ppu21I YACGTR 2 cut(s) 107, 452
PpuMI RGGWCCY 1 cut(s) 875
Psp124BI GAGCTC 2 cut(s) 927, 1332
Psp5II RGGWCCY 1 cut(s) 875
PspCI CACGTG 1 cut(s) 452
PspN4I GGNNCC 6 cut(s) 32, 121, 364, 477, 867, 876
PspPI GGNCC 3 cut(s) 362, 437, 875
PspPPI RGGWCCY 1 cut(s) 875
PstNI CAGNNNCTG 1 cut(s) 1234
PsuI RGATCY 5 cut(s) 148, 159, 392, 567, 888
RsaI GTAC 2 cut(s) 1016, 1368
RsaNI GTAC 2 cut(s) 1015, 1367
SacI GAGCTC 2 cut(s) 927, 1332
SapI GCTCTTC 1 cut(s) 591
SaqAI TTAA 4 cut(s) 62, 1212, 1353, 1362
Sau96I GGNCC 3 cut(s) 362, 437, 875
SchI GAGTC 1 cut(s) 1123
ScrFI CCNGG 3 cut(s) 1097, 1098, 1175
SduI GDGCHC 4 cut(s) 844, 868, 927, 1332
SfaNI GCATC 3 cut(s) 583, 679, 744
SfcI CTRYAG 1 cut(s) 547
SfoI GGCGCC 2 cut(s) 121, 477
SfuI TTCGAA 1 cut(s) 945
SinI GGWCC 3 cut(s) 362, 437, 875
SmaI CCCGGG 1 cut(s) 1098
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
SnaBI TACGTA 1 cut(s) 107
Sse9I AATT 7 cut(s) 59, 128, 216, 259, 427, 790, 1160
SsiI CCGC 3 cut(s) 902, 1291, 1358
SspDI GGCGCC 2 cut(s) 119, 475
SspMI CTAG 5 cut(s) 417, 1019, 1103, 1269, 1302
SstI GAGCTC 2 cut(s) 927, 1332
StyD4I CCNGG 3 cut(s) 1095, 1096, 1173
StyI CCWWGG 2 cut(s) 722, 870
TaaI ACNGT 7 cut(s) 94, 203, 251, 548, 1043, 1152, 1185
TaiI ACGT 3 cut(s) 109, 290, 454
TaqI TCGA 6 cut(s) 210, 524, 540, 564, 591, 945
TasI AATT 7 cut(s) 59, 128, 216, 259, 427, 790, 1160
TfiI GAWTC 6 cut(s) 39, 73, 233, 493, 1054, 1231
Tru1I TTAA 4 cut(s) 62, 1212, 1353, 1362
Tru9I TTAA 4 cut(s) 62, 1212, 1353, 1362
TseFI GTSAC 4 cut(s) 245, 463, 648, 1126
Tsp45I GTSAC 4 cut(s) 245, 463, 648, 1126
TspDTI ATGAA 4 cut(s) 421, 1086, 1331, 1334
TspGWI ACGGA 3 cut(s) 152, 881, 1299
TspMI CCCGGG 1 cut(s) 1096
VpaK11BI GGWCC 3 cut(s) 362, 437, 875
XapI RAATTY 3 cut(s) 128, 216, 1160
XmaI CCCGGG 1 cut(s) 1096
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 5 cut(s) 417, 1019, 1103, 1269, 1302
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.