Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003804

Physical Location & Seq

Genomic Coordinates Forward (+)

37955122 .. 37955721

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0236900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAACCACAAAGCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCTGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGAGCTTGTTGGTGATGACAATGTTACCAATTCATCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCTATGAACATAGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGATCACGGTGGTGGCTCTCACATTTCCCTTAAGCTCAGCCTTTCTTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0033843 GO:0035252 GO:0042285 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

199

Amino Acids

21.92

Weight (kDa)

9.15

Isoelectric Point (pI)

69.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	4.8e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62720 AT3G62720 AT4G02500
fragaria_vesca	FvH4_2g25410 FvH4_4g18040
malus_domestica	MD03G1285400.v1.1 MD11G1304800.v1.1 MD13G1168600.v1.1 MD16G1169000.v1.1
prunus_persica	Prupe.1G136700_v2.0.a1 Prupe.8G258300_v2.0.a1
pyrus_communis	pycom03g22630 pycom11g26660 pycom13g14420 pycom16g14220
rosa_chinensis	RchiOBHm_Chr4g0422251 RchiOBHm_Chr6g0293591
rosa_laevigata	RLG00000007625 RLG00000011938
rosa_multiflora	Rmu_sc0006269.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364360 Rroxscaffold_7G00174060
rosa_rugosa	Rorug04G0178900 Rorug06G0236900
rosa_samantha	Rh4AG238000 Rh4BG241200 Rh4CG253100 Rh4DG236800 Rh6AG349500 Rh6BG356900 Rh6CG363600 Rh6DG350600
rosa_wichuraiana	Rw4G020600 Rw6G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	78, 361
Acc36I	ACCTGC	3 cut(s)	78, 160, 361
AccIII	TCCGGA	1 cut(s)	588
AciI	CCGC	4 cut(s)	82, 369, 414, 595
AclWI	GGATC	2 cut(s)	188, 430
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	467
AflII	CTTAAG	1 cut(s)	545
AgsI	TTSAA	2 cut(s)	220, 443
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	5 cut(s)	130, 193, 316, 550, 575
AluI	AGCT	5 cut(s)	130, 193, 316, 550, 575
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	188, 430
Aor13HI	TCCGGA	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	335, 482
AvaII	GGWCC	2 cut(s)	153, 276
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	26, 394, 500
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	102, 162
BfrI	CTTAAG	1 cut(s)	545
BfuAI	ACCTGC	3 cut(s)	78, 160, 361
BisI	GCNGC	2 cut(s)	51, 595
BlpI	GCTNAGC	1 cut(s)	551
BlsI	GCNGC	2 cut(s)	52, 596
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	153, 276
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	3 cut(s)	6, 155, 593
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	2 cut(s)	173, 278
Bpu1102I	GCTNAGC	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	588
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	565
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	54, 589
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	256, 300
Bsp13I	TCCGGA	1 cut(s)	588
Bsp143I	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
Bsp1720I	GCTNAGC	1 cut(s)	551
BspACI	CCGC	4 cut(s)	82, 369, 414, 595
BspCNI	CTCAG	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	588
BspLI	GGNNCC	3 cut(s)	6, 155, 593
BspMI	ACCTGC	3 cut(s)	78, 160, 361
BspPI	GGATC	2 cut(s)	188, 430
BspTI	CTTAAG	1 cut(s)	545
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	551
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	6 cut(s)	109, 183, 213, 311, 425, 520
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	180, 422
BstYI	RGATCY	2 cut(s)	180, 422
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	3 cut(s)	78, 160, 361
Cac8I	GCNNGC	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	6 cut(s)	70, 293, 301, 463, 467, 490
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	6 cut(s)	108, 182, 212, 310, 424, 519
DpnII	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	153, 276
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	6 cut(s)	73, 296, 304, 466, 470, 493
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	6 cut(s)	69, 292, 300, 462, 466, 489
Fnu4HI	GCNGC	2 cut(s)	51, 595
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	2 cut(s)	51, 595
GluI	GCNGC	2 cut(s)	51, 595
GsuI	CTGGAG	2 cut(s)	173, 278
HapII	CCGG	2 cut(s)	54, 589
Hin1II	CATG	6 cut(s)	73, 296, 304, 466, 470, 493
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	2 cut(s)	54, 589
HphI	GGTGA	2 cut(s)	335, 482
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	5 cut(s)	111, 177, 286, 313, 505
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 589
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 350, 466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	6 cut(s)	73, 296, 304, 466, 470, 493
Kpn2I	TCCGGA	1 cut(s)	588
Kzo9I	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
LmnI	GCTCC	3 cut(s)	84, 127, 591
LpnPI	CCDG	9 cut(s)	29, 67, 73, 155, 203, 242, 357, 366, 561
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	6 cut(s)	108, 182, 212, 310, 424, 519
MboI	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
MboII	GAAGA	4 cut(s)	280, 283, 357, 505
MflI	RGATCY	2 cut(s)	180, 422
MhlI	GDGCHC	2 cut(s)	256, 300
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	22, 29, 131, 171, 267, 462, 466, 503, 559
Mph1103I	ATGCAT	1 cut(s)	468
MroI	TCCGGA	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	2 cut(s)	390, 546
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	3 cut(s)	193, 371, 597
MspCI	CTTAAG	1 cut(s)	545
MspI	CCGG	2 cut(s)	54, 589
MspR9I	CCNGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	79, 368, 561
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
NlaIII	CATG	6 cut(s)	73, 296, 304, 466, 470, 493
NlaIV	GGNNCC	3 cut(s)	6, 155, 593
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	525
PaqCI	CACCTGC	2 cut(s)	78, 361
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	52, 596
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	6, 155, 593
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 422
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	390, 546
SatI	GCNGC	2 cut(s)	51, 595
Sau3AI	GATC	6 cut(s)	106, 180, 210, 308, 422, 517
Sau96I	GGNCC	2 cut(s)	153, 276
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	256, 300
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	2 cut(s)	153, 276
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	122, 545
SmoI	CTYRAG	2 cut(s)	122, 545
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	82, 369, 414, 595
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	597
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	390, 546
Tru9I	TTAA	2 cut(s)	390, 546
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	4 cut(s)	281, 333, 443, 506
Vha464I	CTTAAG	1 cut(s)	545
VpaK11BI	GGWCC	2 cut(s)	153, 276
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.