Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016203

Physical Location & Seq

Genomic Coordinates Forward (+)

1134429 .. 1137204

Gene Structure 2776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCTGGCTAGGCTCGCTGCGAAGCGTCTTCTCGAGATCCGTCAAGTTTTCCGTCAACCAACCTCTCAGGTGACTCGTAGCTTATCGACGGCCTTAAACTACCATCTGGATTCTCCTGATAACAAACCCGATCTTCCATGGGAGTTTTCAGAGGCTAACCAATCTAAGGTTAAGGAGATTCTCTCTTACTATCCATCCAATTACAAGCAGTCCGCAGTTATTCCTCTCCTAGATCTTGCACAACAGCAGAATGGAGGCTGGCTCCCTGTTTCAGCAATGAATGCGGTTGCTAAAGTTATAGAAGTTGCCCCTATCCGTGTTTATGAGGTTGCAACATTTTACTCAATGTTCAACAGAGCAAAGGTTGGAAAGTATCACCTTCTAGTTTGTGGCACAACACCTTGCATGATCCGTGGTTCACGAGACATCGAATCAGCTTTGCTAGACCATTTGGGAGTGAAACGCGGTGAGGTCACAAAGGATGGTTTGTTCTCTGTTGGAGAGATGGAGTGCATGGGATGTTGTGTTAATGCACCCATGATCACTGTGGCTGACTATTCCAATGGATCAGAAGGATATACATATAACTATTTCGAAGATGTTACACCTGAGAAAGTCGTAGAAATTGTTGAAAAGCTGAGAAAAGGAGAAAAGCCACCGCATGGAACTCAGAACCCGAAGAGGATCAAGTGTGGACCAGAAGGAGGGAATAAGACACTGCTTGGTGAGCCTAAGCCACCACAATTCCGTGATCTTGATGCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008137 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

2Fe-2S_thioredx

Protein Analysis

255

Amino Acids

28.39

Weight (kDa)

8.09

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2Fe-2S_thioredx	PF01257	57 - 213	1.1e-50	Thioredoxin-like [2Fe-2S] ferredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02580
fragaria_vesca	FvH4_6g29310
malus_domestica	MD17G1215900.v1.1 MD17G1216000.v1.1
prunus_persica	Prupe.3G092100_v2.0.a1
pyrus_communis	pycom17g22060
rosa_chinensis	RchiOBHm_Chr2g0134501
rosa_laevigata	RLG00000019397
rosa_multiflora	Rmu_sc0005464.1_g000028
rosa_roxburghii	Rroxscaffold_2G00110160
rosa_rugosa	Rorug02G0317800
rosa_samantha	Rh2AG375500 Rh2CG354200 Rh2DG393300
rosa_wichuraiana	Rw2G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccII	CGCG	1 cut(s)	465
AciI	CCGC	4 cut(s)	213, 284, 465, 659
AclWI	GGATC	4 cut(s)	31, 403, 574, 692
AfiI	CCNNNNNNNGG	3 cut(s)	166, 662, 704
AgsI	TTSAA	2 cut(s)	352, 632
AloI	GAACNNNNNNTCC	2 cut(s)	473, 505
AluBI	AGCT	3 cut(s)	81, 437, 637
AluI	AGCT	3 cut(s)	81, 437, 637
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	4 cut(s)	31, 403, 574, 692
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	4 cut(s)	82, 368, 479, 737
AsuII	TTCGAA	1 cut(s)	594
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	695
BauI	CACGAG	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	4 cut(s)	111, 202, 476, 499
BceAI	ACGGC	1 cut(s)	105
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	4 cut(s)	9, 230, 383, 443
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	695
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	1 cut(s)	263
BmsI	GCATC	1 cut(s)	748
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	4 cut(s)	167, 199, 246, 278
Bpu10I	CCTNAGC	1 cut(s)	732
Bpu14I	TTCGAA	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	137, 412
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 662, 704
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	137, 412
BseGI	GGATG	3 cut(s)	194, 487, 524
BseLI	CCNNNNNNNGG	3 cut(s)	166, 662, 704
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	4 cut(s)	80, 600, 629, 683
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	32
BslI	CCNNNNNNNGG	3 cut(s)	166, 662, 704
BsmAI	GTCTC	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	594
Bsp143I	GATC	8 cut(s)	36, 130, 232, 408, 540, 566, 684, 751
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	4 cut(s)	213, 284, 465, 659
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	4 cut(s)	79, 601, 630, 682
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	4 cut(s)	31, 403, 574, 692
BspT104I	TTCGAA	1 cut(s)	594
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	137, 412
BssMI	GATC	8 cut(s)	36, 130, 232, 408, 540, 566, 684, 751
BssSI	CACGAG	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	1 cut(s)	674
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	594
BstC8I	GCNNGC	4 cut(s)	6, 15, 260, 763
BstDEI	CTNAG	6 cut(s)	66, 165, 609, 638, 669, 732
BstDSI	CCRYGG	2 cut(s)	137, 412
BstF5I	GGATG	3 cut(s)	194, 487, 524
BstFNI	CGCG	1 cut(s)	465
BstKTI	GATC	8 cut(s)	39, 133, 235, 411, 543, 569, 687, 754
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	8 cut(s)	36, 130, 232, 408, 540, 566, 684, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 14, 281, 727
BstNSI	RCATGY	1 cut(s)	765
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	2 cut(s)	36, 232
BstYI	RGATCY	2 cut(s)	36, 232
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	2 cut(s)	137, 412
BtsCI	GGATG	3 cut(s)	194, 487, 524
BtsI	GCAGTG	1 cut(s)	716
BtsIMutI	CAGTG	2 cut(s)	543, 716
Cac8I	GCNNGC	4 cut(s)	6, 15, 260, 763
Cfr13I	GGNCC	1 cut(s)	695
CseI	GACGC	1 cut(s)	14
CviAII	CATG	6 cut(s)	138, 406, 514, 538, 662, 762
DdeI	CTNAG	6 cut(s)	66, 165, 609, 638, 669, 732
DpnI	GATC	8 cut(s)	38, 132, 234, 410, 542, 568, 686, 753
DpnII	GATC	8 cut(s)	36, 130, 232, 408, 540, 566, 684, 751
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	763
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	6 cut(s)	141, 409, 517, 541, 665, 765
FatI	CATG	6 cut(s)	137, 405, 513, 537, 661, 761
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	3 cut(s)	181, 494, 531
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	4 cut(s)	9, 230, 383, 443
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	92
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	6 cut(s)	141, 409, 517, 541, 665, 765
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HinfI	GANTC	4 cut(s)	73, 110, 178, 431
HphI	GGTGA	4 cut(s)	82, 368, 479, 737
Hpy166II	GTNNAC	3 cut(s)	56, 419, 695
Hpy188I	TCNGA	3 cut(s)	151, 571, 672
Hpy188III	TCNNGA	6 cut(s)	32, 34, 107, 116, 420, 755
Hpy8I	GTNNAC	3 cut(s)	56, 419, 695
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	389, 566, 695
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4V	TGCA	6 cut(s)	239, 332, 405, 513, 533, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 14, 281, 727
HpyF3I	CTNAG	6 cut(s)	66, 165, 609, 638, 669, 732
Hsp92II	CATG	6 cut(s)	141, 409, 517, 541, 665, 765
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	8 cut(s)	36, 130, 232, 408, 540, 566, 684, 751
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	7 cut(s)	53, 92, 129, 244, 279, 621, 711
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	748
MaeI	CTAG	4 cut(s)	9, 230, 383, 443
MaeIII	GTNAC	3 cut(s)	70, 472, 601
MalI	GATC	8 cut(s)	38, 132, 234, 410, 542, 568, 686, 753
MboI	GATC	8 cut(s)	36, 130, 232, 408, 540, 566, 684, 751
MboII	GAAGA	4 cut(s)	20, 125, 608, 691
MflI	RGATCY	2 cut(s)	36, 232
MluCI	AATT	3 cut(s)	199, 624, 743
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	2 cut(s)	346, 478
MnlI	CCTC	8 cut(s)	73, 145, 234, 248, 319, 463, 675, 698
Mph1103I	ATGCAT	1 cut(s)	763
MseI	TTAA	3 cut(s)	95, 171, 528
Mva1269I	GAATGC	1 cut(s)	286
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	4 cut(s)	10, 14, 281, 727
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	8 cut(s)	36, 130, 232, 408, 540, 566, 684, 751
NlaIII	CATG	6 cut(s)	141, 409, 517, 541, 665, 765
NlaIV	GGNNCC	1 cut(s)	263
NmuCI	GTSAC	2 cut(s)	70, 472
NsiI	ATGCAT	1 cut(s)	763
NspI	RCATGY	1 cut(s)	765
NspV	TTCGAA	1 cut(s)	594
PaeI	GCATGC	1 cut(s)	765
PaeR7I	CTCGAG	1 cut(s)	32
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	110, 178, 431
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	36, 232
SaqAI	TTAA	3 cut(s)	95, 171, 528
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	8 cut(s)	36, 130, 232, 408, 540, 566, 684, 751
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	748
Sfr274I	CTCGAG	1 cut(s)	32
SfuI	TTCGAA	1 cut(s)	594
SinI	GGWCC	1 cut(s)	695
SlaI	CTCGAG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SphI	GCATGC	1 cut(s)	765
Sse9I	AATT	3 cut(s)	199, 624, 743
SsiI	CCGC	4 cut(s)	213, 284, 465, 659
SspMI	CTAG	4 cut(s)	9, 230, 383, 443
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	547
TaqI	TCGA	4 cut(s)	33, 86, 429, 594
TasI	AATT	3 cut(s)	199, 624, 743
TfiI	GAWTC	3 cut(s)	110, 178, 431
Tru1I	TTAA	3 cut(s)	95, 171, 528
Tru9I	TTAA	3 cut(s)	95, 171, 528
TscAI	CASTG	2 cut(s)	550, 723
TseFI	GTSAC	2 cut(s)	70, 472
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	70, 472
TspDTI	ATGAA	1 cut(s)	293
TspGWI	ACGGA	5 cut(s)	29, 41, 305, 401, 737
TspRI	CASTG	2 cut(s)	550, 723
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	695
XceI	RCATGY	1 cut(s)	765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XhoI	CTCGAG	1 cut(s)	32
XspI	CTAG	4 cut(s)	9, 230, 383, 443
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.