Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016203

Physical Location & Seq

Genomic Coordinates Forward (+)

38761989 .. 38764334

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0317800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCTGGCATTGTGAGGGTTGCCGTGCTGCCGGACCCAGAATCTGAGGCTCGATCTCGCTACCCTGTTTCGGGTGAGGCTGTGTCCAGAGATGGGTTTAATTTGGAGTATAAGTGGGAAGCAAAAGGGAACATTGATGGTGAGCTTGTTGGTGTTGTAGGGGACTCGTGGGTGCTGAGGCCAGAGCCTGTTTCGGTTACTTGCCATTCAATTAAGGGTGTTAAGGAAGAGTCGAAAAGGAAGTTGGTTGCCAGGGCGGCGAGGCTGGCTTTGATTGCTGAGGAGGTGGGTTATGTTGATGTGATTCTGGCGATTGAGAAGTACTTGAGGGATGCAATTGAGCCATGGTTTTGGATGGGACTTTTGGTGGGAATGGGTTTTTGTATGAGAGTGAATGGGGTGGCATTGTTACTAAACAAGGATCATTGGATTCTGGTGCAGATGTCGGGTTTGGAGTTTACAATTGAAAATTTTGGTGGTGTACATACTAGGGAAGTCTCAACTAAGTTTGGCACTATCGGCTGGGCCCCATCGGTACTCCCATGTACTATGCCATGGGCCGGGTTCACGACCCACCATGGCGGGGCTCATTTGGGATGCCACCCCGGGCACCCAGGGCCCTGGGCAAGGCCAGCACAGCCCAACTATTTACACAACAGGAGGACTGATATGGCATCAGAAGAACAACTAGTGTCCCACATCGAAGATGGGGGAGACTTCCTTCACATGCTCGAGTATAAAGGCATTAGCACAACCACCTTTTACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008137 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

2Fe-2S_thioredx

Protein Analysis

256

Amino Acids

28.3

Weight (kDa)

5.99

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02580
fragaria_vesca	FvH4_6g29310
malus_domestica	MD17G1215900.v1.1 MD17G1216000.v1.1
prunus_persica	Prupe.3G092100_v2.0.a1
pyrus_communis	pycom17g22060
rosa_chinensis	RchiOBHm_Chr2g0134501
rosa_laevigata	RLG00000019397
rosa_multiflora	Rmu_sc0005464.1_g000028
rosa_roxburghii	Rroxscaffold_2G00110160
rosa_rugosa	Rorug02G0317800
rosa_samantha	Rh2AG375500 Rh2CG354200 Rh2DG393300
rosa_wichuraiana	Rw2G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	609
AciI	CCGC	2 cut(s)	257, 582
AclWI	GGATC	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	469
AfaI	GTAC	4 cut(s)	323, 483, 537, 547
AfiI	CCNNNNNNNGG	7 cut(s)	70, 71, 93, 560, 583, 627, 765
AgsI	TTSAA	2 cut(s)	210, 467
AhlI	ACTAGT	1 cut(s)	688
AjnI	CCWGG	3 cut(s)	251, 613, 620
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw26I	GTCTC	2 cut(s)	502, 708
AlwI	GGATC	1 cut(s)	429
AlwNI	CAGNNNCTG	2 cut(s)	44, 188
Ama87I	CYCGRG	2 cut(s)	605, 731
AoxI	GGCC	5 cut(s)	179, 525, 558, 617, 629
ApaI	GGGCCC	2 cut(s)	529, 621
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	469
AspS9I	GGNCC	6 cut(s)	34, 525, 526, 558, 617, 618
AsuC2I	CCSGG	3 cut(s)	562, 606, 607
AsuHPI	GGTGA	2 cut(s)	86, 152
AvaI	CYCGRG	2 cut(s)	605, 731
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	3 cut(s)	529, 612, 621
BanI	GGYRCC	1 cut(s)	609
BanII	GRGCYC	3 cut(s)	529, 589, 621
BauI	CACGAG	1 cut(s)	166
BbvCI	CCTCAGC	2 cut(s)	176, 279
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	5 cut(s)	86, 131, 349, 538, 701
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	3 cut(s)	253, 615, 622
BcnI	CCSGG	3 cut(s)	562, 606, 607
BcoDI	GTCTC	2 cut(s)	502, 708
BcuI	ACTAGT	1 cut(s)	688
BfaI	CTAG	2 cut(s)	489, 689
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	29, 258
BlsI	GCNGC	2 cut(s)	30, 259
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	6 cut(s)	253, 562, 606, 607, 615, 622
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	2 cut(s)	605, 731
BmgT120I	GGNCC	6 cut(s)	34, 525, 526, 558, 617, 618
BmiI	GGNNCC	5 cut(s)	36, 527, 528, 611, 619
BmrFI	CCNGG	6 cut(s)	253, 562, 606, 607, 615, 622
BmsI	GCATC	3 cut(s)	322, 587, 683
Bpu10I	CCTNAGC	2 cut(s)	176, 279
BpuEI	CTTGAG	1 cut(s)	346
BpuMI	CCSGG	3 cut(s)	562, 606, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	7 cut(s)	70, 71, 93, 560, 583, 627, 765
BseBI	CCWGG	3 cut(s)	253, 615, 622
BseGI	GGATG	3 cut(s)	337, 360, 602
BseLI	CCNNNNNNNGG	7 cut(s)	70, 71, 93, 560, 583, 627, 765
BseMII	CTCAG	3 cut(s)	36, 167, 270
BseRI	GAGGAG	1 cut(s)	296
BseSI	GKGCMC	3 cut(s)	529, 612, 621
BseXI	GCAGC	1 cut(s)	15
BseYI	CCCAGC	1 cut(s)	522
BsgI	GTGCAG	1 cut(s)	458
BshFI	GGCC	5 cut(s)	181, 527, 560, 619, 631
BshNI	GGYRCC	1 cut(s)	609
BsiHKCI	CYCGRG	2 cut(s)	605, 731
BsiSI	CCGG	3 cut(s)	32, 561, 606
BslFI	GGGAC	3 cut(s)	176, 372, 679
BslI	CCNNNNNNNGG	7 cut(s)	70, 71, 93, 560, 583, 627, 765
BsmAI	GTCTC	2 cut(s)	502, 708
BsmFI	GGGAC	3 cut(s)	176, 372, 679
BsnI	GGCC	5 cut(s)	181, 527, 560, 619, 631
BsoBI	CYCGRG	2 cut(s)	605, 731
Bsp120I	GGGCCC	2 cut(s)	525, 617
Bsp1286I	GDGCHC	4 cut(s)	529, 589, 612, 621
Bsp1407I	TGTACA	1 cut(s)	481
Bsp143I	GATC	2 cut(s)	53, 421
Bsp19I	CCATGG	3 cut(s)	344, 554, 577
BspACI	CCGC	2 cut(s)	257, 582
BspANI	GGCC	5 cut(s)	181, 527, 560, 619, 631
BspCNI	CTCAG	3 cut(s)	37, 168, 271
BspLI	GGNNCC	5 cut(s)	36, 527, 528, 611, 619
BspPI	GGATC	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	609
BsrGI	TGTACA	1 cut(s)	481
BssMI	GATC	2 cut(s)	53, 421
BssSI	CACGAG	1 cut(s)	166
BssT1I	CCWWGG	3 cut(s)	344, 554, 577
Bst2BI	CACGAG	1 cut(s)	166
Bst2UI	CCWGG	3 cut(s)	253, 615, 622
Bst6I	CTCTTC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	481
BstC8I	GCNNGC	3 cut(s)	7, 267, 633
BstDEI	CTNAG	4 cut(s)	45, 176, 279, 504
BstDSI	CCRYGG	3 cut(s)	344, 554, 577
BstENI	CCTNNNNNAGG	1 cut(s)	625
BstF5I	GGATG	3 cut(s)	337, 360, 602
BstKTI	GATC	2 cut(s)	56, 424
BstMAI	GTCTC	2 cut(s)	502, 708
BstMBI	GATC	2 cut(s)	53, 421
BstMWI	GCNNNNNNNGC	7 cut(s)	257, 266, 275, 519, 616, 632, 637
BstNI	CCWGG	3 cut(s)	253, 615, 622
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	6 cut(s)	251, 560, 604, 605, 613, 620
BstSLI	GKGCMC	3 cut(s)	529, 612, 621
BstV1I	GCAGC	1 cut(s)	15
BstXI	CCANNNNNNTGG	2 cut(s)	351, 621
BsuRI	GGCC	5 cut(s)	181, 527, 560, 619, 631
BtgI	CCRYGG	3 cut(s)	344, 554, 577
BtsCI	GGATG	3 cut(s)	337, 360, 602
Cac8I	GCNNGC	3 cut(s)	7, 267, 633
CaiI	CAGNNNCTG	2 cut(s)	44, 188
Cfr13I	GGNCC	6 cut(s)	34, 525, 526, 558, 617, 618
Cfr9I	CCCGGG	1 cut(s)	605
Csp6I	GTAC	4 cut(s)	322, 482, 536, 546
CviAII	CATG	5 cut(s)	345, 543, 555, 578, 727
CviQI	GTAC	4 cut(s)	322, 482, 536, 546
DdeI	CTNAG	4 cut(s)	45, 176, 279, 504
DpnI	GATC	2 cut(s)	55, 423
DpnII	GATC	2 cut(s)	53, 421
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	3 cut(s)	344, 554, 577
Eco24I	GRGCYC	3 cut(s)	529, 589, 621
Eco47I	GGWCC	1 cut(s)	34
Eco88I	CYCGRG	2 cut(s)	605, 731
EcoNI	CCTNNNNNAGG	1 cut(s)	625
EcoO109I	RGGNCCY	3 cut(s)	526, 617, 618
EcoRII	CCWGG	3 cut(s)	251, 613, 620
EcoT14I	CCWWGG	3 cut(s)	344, 554, 577
EcoT38I	GRGCYC	3 cut(s)	529, 589, 621
ErhI	CCWWGG	3 cut(s)	344, 554, 577
FaeI	CATG	5 cut(s)	348, 546, 558, 581, 730
FaqI	GGGAC	3 cut(s)	176, 372, 679
FatI	CATG	5 cut(s)	344, 542, 554, 577, 726
FauI	CCCGC	1 cut(s)	575
Fnu4HI	GCNGC	2 cut(s)	29, 258
FokI	GGATG	3 cut(s)	344, 367, 609
FriOI	GRGCYC	3 cut(s)	529, 589, 621
Fsp4HI	GCNGC	2 cut(s)	29, 258
FspBI	CTAG	2 cut(s)	489, 689
GluI	GCNGC	2 cut(s)	29, 258
GsaI	CCCAGC	1 cut(s)	526
HaeIII	GGCC	5 cut(s)	181, 527, 560, 619, 631
HapII	CCGG	3 cut(s)	32, 561, 606
Hin1II	CATG	5 cut(s)	348, 546, 558, 581, 730
HinfI	GANTC	5 cut(s)	41, 164, 230, 304, 430
HpaII	CCGG	3 cut(s)	32, 561, 606
HphI	GGTGA	2 cut(s)	86, 152
Hpy166II	GTNNAC	3 cut(s)	459, 482, 567
Hpy188I	TCNGA	2 cut(s)	46, 679
Hpy188III	TCNNGA	2 cut(s)	87, 568
Hpy8I	GTNNAC	3 cut(s)	459, 482, 567
HpyAV	CCTTC	1 cut(s)	731
HpyCH4V	TGCA	2 cut(s)	335, 439
HpyF10VI	GCNNNNNNNGC	7 cut(s)	257, 266, 275, 519, 616, 632, 637
HpyF3I	CTNAG	4 cut(s)	45, 176, 279, 504
Hsp92II	CATG	5 cut(s)	348, 546, 558, 581, 730
Kzo9I	GATC	2 cut(s)	53, 421
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	3 cut(s)	322, 587, 683
MaeI	CTAG	2 cut(s)	489, 689
MaeIII	GTNAC	2 cut(s)	196, 408
MalI	GATC	2 cut(s)	55, 423
MboI	GATC	2 cut(s)	53, 421
MboII	GAAGA	3 cut(s)	239, 692, 716
MfeI	CAATTG	2 cut(s)	336, 462
MhlI	GDGCHC	4 cut(s)	529, 589, 612, 621
MluCI	AATT	5 cut(s)	100, 210, 336, 462, 469
MlyI	GAGTC	2 cut(s)	158, 239
MnlI	CCTC	9 cut(s)	9, 40, 70, 171, 255, 274, 277, 321, 654
MseI	TTAA	3 cut(s)	99, 213, 222
MspI	CCGG	3 cut(s)	32, 561, 606
MspR9I	CCNGG	6 cut(s)	253, 562, 606, 607, 615, 622
MunI	CAATTG	2 cut(s)	336, 462
MvaI	CCWGG	3 cut(s)	253, 615, 622
MwoI	GCNNNNNNNGC	7 cut(s)	257, 266, 275, 519, 616, 632, 637
NciI	CCSGG	3 cut(s)	562, 606, 607
NcoI	CCATGG	3 cut(s)	344, 554, 577
NdeII	GATC	2 cut(s)	53, 421
NlaIII	CATG	5 cut(s)	348, 546, 558, 581, 730
NlaIV	GGNNCC	5 cut(s)	36, 527, 528, 611, 619
NspI	RCATGY	1 cut(s)	730
PaeR7I	CTCGAG	1 cut(s)	731
PasI	CCCWGGG	2 cut(s)	614, 621
PfeI	GAWTC	3 cut(s)	41, 304, 430
PkrI	GCNGC	2 cut(s)	30, 259
PleI	GAGTC	2 cut(s)	158, 238
PpsI	GAGTC	2 cut(s)	158, 238
Psp6I	CCWGG	3 cut(s)	251, 613, 620
PspFI	CCCAGC	1 cut(s)	522
PspGI	CCWGG	3 cut(s)	251, 613, 620
PspN4I	GGNNCC	5 cut(s)	36, 527, 528, 611, 619
PspOMI	GGGCCC	2 cut(s)	525, 617
PspPI	GGNCC	6 cut(s)	34, 525, 526, 558, 617, 618
PspXI	VCTCGAGB	1 cut(s)	731
PstNI	CAGNNNCTG	2 cut(s)	44, 188
RsaI	GTAC	4 cut(s)	323, 483, 537, 547
RsaNI	GTAC	4 cut(s)	322, 482, 536, 546
SaqAI	TTAA	3 cut(s)	99, 213, 222
SatI	GCNGC	2 cut(s)	29, 258
Sau3AI	GATC	2 cut(s)	53, 421
Sau96I	GGNCC	6 cut(s)	34, 525, 526, 558, 617, 618
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	2 cut(s)	158, 239
ScrFI	CCNGG	6 cut(s)	253, 562, 606, 607, 615, 622
SduI	GDGCHC	4 cut(s)	529, 589, 612, 621
SetI	ASST	3 cut(s)	147, 288, 761
SfaNI	GCATC	3 cut(s)	322, 587, 683
Sfr274I	CTCGAG	1 cut(s)	731
SinI	GGWCC	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	731
SmaI	CCCGGG	1 cut(s)	607
SmlI	CTYRAG	2 cut(s)	325, 731
SmoI	CTYRAG	2 cut(s)	325, 731
SpeI	ACTAGT	1 cut(s)	688
Sse9I	AATT	5 cut(s)	100, 210, 336, 462, 469
SsiI	CCGC	2 cut(s)	257, 582
SspMI	CTAG	2 cut(s)	489, 689
StyD4I	CCNGG	6 cut(s)	251, 560, 604, 605, 613, 620
StyI	CCWWGG	3 cut(s)	344, 554, 577
TaqI	TCGA	4 cut(s)	52, 233, 702, 732
TasI	AATT	5 cut(s)	100, 210, 336, 462, 469
TatI	WGTACW	3 cut(s)	321, 481, 545
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	3 cut(s)	41, 304, 430
Tru1I	TTAA	3 cut(s)	99, 213, 222
Tru9I	TTAA	3 cut(s)	99, 213, 222
TseI	GCWGC	1 cut(s)	28
TspMI	CCCGGG	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	625
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	704
XhoI	CTCGAG	1 cut(s)	731
XmaI	CCCGGG	1 cut(s)	605
XspI	CTAG	2 cut(s)	489, 689
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.