Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016203

Physical Location & Seq

Genomic Coordinates Forward (+)

26295033 .. 26299439

Gene Structure 4407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1216000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCTGGCTCGCCTCGCCTCCAATCGGCTCCAGGAGATCCGTCGGACTTTCACTCAGCCTCTCCGATCCTTCTCTACCGCCCTCAACTACCATCTTGATTCGCCGGAAAACAATCCAGACCTACCATGGGAGTTCTCCGACGCTAACAAGCAGAAGGCGAAAGAGATGTTATCCCATTATCCATCCAACTACAAGCAGTCTGCAGTGATTCCTCTGCTGGATCTTGCACAGCAGCAGCATGGAGGGTGGCTCCCTGTTTCAGCAATGAATGCAGTAGCGAAGGTAATAGAAGTTGCACCTATACGTGTATATGAAGTTGCAACATTTTACTCAATGTTCAATCGGACTAAGGTGGGTAGGTACCACCTTTTGGTTTGTGGCACAACACCATGTATGATTCGTGGTTCACGAGACATTGAAGCAGCTTTACTGAAACATTTAGGAGTGAAGCGCAATGAAGTAACCAAGGATGGATTATTTTCTGTTGGAGAAATGGAATGCATGGGAAGCTGTGTGAATGCTCCCATGATTACAGTCGCTGATTACTCCAATGGATCAGAGGGATATACGTACAATTACTACGAAGATGTTACTCCCGAGCGAGTTGTGGAAATAGTTGAGAAGTTAAAAAAGGGCGAGAAGCCACCGCATGGTACTCAGAATCCTAAGCGCATTATGTGCGGTCCAGAAGGAGGAAATACCACGTTGCTTGGTGAGCCCAAACCTCCTCCGTGCCGTGATCTTGACGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008137 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

2Fe-2S_thioredx

Protein Analysis

252

Amino Acids

28.04

Weight (kDa)

7.59

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2Fe-2S_thioredx	PF01257	54 - 210	1.4e-50	Thioredoxin-like [2Fe-2S] ferredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02580
fragaria_vesca	FvH4_6g29310
malus_domestica	MD17G1215900.v1.1 MD17G1216000.v1.1
prunus_persica	Prupe.3G092100_v2.0.a1
pyrus_communis	pycom17g22060
rosa_chinensis	RchiOBHm_Chr2g0134501
rosa_laevigata	RLG00000019397
rosa_multiflora	Rmu_sc0005464.1_g000028
rosa_roxburghii	Rroxscaffold_2G00110160
rosa_rugosa	Rorug02G0317800
rosa_samantha	Rh2AG375500 Rh2CG354200 Rh2DG393300
rosa_wichuraiana	Rw2G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	360
AccB7I	CCANNNNNTGG	2 cut(s)	370, 650
AciI	CCGC	3 cut(s)	78, 647, 681
AclWI	GGATC	4 cut(s)	31, 60, 228, 562
AfaI	GTAC	3 cut(s)	362, 572, 655
AfiI	CCNNNNNNNGG	5 cut(s)	24, 127, 370, 650, 692
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	340, 419
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	425, 510
AluI	AGCT	2 cut(s)	425, 510
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	4 cut(s)	31, 60, 228, 562
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	232, 235, 422
Asp718I	GGTACC	1 cut(s)	360
AspLEI	GCGC	2 cut(s)	453, 672
AspS9I	GGNCC	1 cut(s)	683
AsuHPI	GGTGA	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	683
BanI	GGYRCC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	720
BarI	GAAGNNNNNNTAC	2 cut(s)	411, 443
BauI	CACGAG	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	244, 247, 434
BccI	CCATC	3 cut(s)	99, 190, 464
BceAI	ACGGC	1 cut(s)	720
BciT130I	CCWGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	3 cut(s)	233, 236, 423
BlsI	GCNGC	3 cut(s)	234, 237, 424
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	3 cut(s)	29, 251, 362
BmrFI	CCNGG	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpmI	CTGGAG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	666
BsaAI	YACGTR	2 cut(s)	305, 570
BsaJI	CCNNGG	2 cut(s)	125, 465
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 127, 370, 650, 692
Bse3DI	GCAATG	2 cut(s)	270, 460
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	125, 465
BseGI	GGATG	2 cut(s)	182, 475
BseLI	CCNNNNNNNGG	5 cut(s)	24, 127, 370, 650, 692
BseMI	GCAATG	2 cut(s)	270, 460
BseMII	CTCAG	2 cut(s)	68, 671
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	3 cut(s)	244, 247, 434
BshNI	GGYRCC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	5 cut(s)	24, 127, 370, 650, 692
BsmAI	GTCTC	1 cut(s)	405
BsmI	GAATGC	3 cut(s)	274, 503, 523
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp143I	GATC	5 cut(s)	36, 65, 220, 554, 739
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	3 cut(s)	78, 647, 681
BspCNI	CTCAG	2 cut(s)	67, 670
BspLI	GGNNCC	3 cut(s)	29, 251, 362
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	4 cut(s)	31, 60, 228, 562
BspT107I	GGYRCC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	270, 460
BssECI	CCNNGG	2 cut(s)	125, 465
BssMI	GATC	5 cut(s)	36, 65, 220, 554, 739
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	2 cut(s)	125, 465
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	535
BstAPI	GCANNNNNTGC	2 cut(s)	269, 678
BstBAI	YACGTR	2 cut(s)	305, 570
BstC8I	GCNNGC	2 cut(s)	6, 10
BstDEI	CTNAG	4 cut(s)	54, 348, 657, 666
BstDSI	CCRYGG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	182, 475
BstHHI	GCGC	2 cut(s)	453, 672
BstKTI	GATC	5 cut(s)	39, 68, 223, 557, 742
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	5 cut(s)	36, 65, 220, 554, 739
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 269, 507, 678, 715
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	201
BstSNI	TACGTA	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	244, 247, 434
BstX2I	RGATCY	2 cut(s)	36, 220
BstYI	RGATCY	2 cut(s)	36, 220
BtgI	CCRYGG	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	182, 475
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	6, 10
CaiI	CAGNNNCTG	1 cut(s)	539
CfoI	GCGC	2 cut(s)	453, 672
Cfr13I	GGNCC	1 cut(s)	683
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	361, 571, 654
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	7 cut(s)	126, 239, 390, 502, 526, 650, 750
CviJI	RGCY	8 cut(s)	8, 28, 58, 250, 425, 510, 643, 718
CviKI_1	RGCY	8 cut(s)	8, 28, 58, 250, 425, 510, 643, 718
CviQI	GTAC	3 cut(s)	361, 571, 654
DdeI	CTNAG	4 cut(s)	54, 348, 657, 666
DpnI	GATC	5 cut(s)	38, 67, 222, 556, 741
DpnII	GATC	5 cut(s)	36, 65, 220, 554, 739
Eco105I	TACGTA	1 cut(s)	570
Eco130I	CCWWGG	2 cut(s)	125, 465
Eco24I	GRGCYC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	683
Eco88I	CYCGRG	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	125, 465
EcoT22I	ATGCAT	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	2 cut(s)	125, 465
FaeI	CATG	7 cut(s)	129, 242, 393, 505, 529, 653, 753
FatI	CATG	7 cut(s)	125, 238, 389, 501, 525, 649, 749
Fnu4HI	GCNGC	3 cut(s)	233, 236, 423
FokI	GGATG	2 cut(s)	169, 482
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	3 cut(s)	233, 236, 423
GlaI	GCGC	2 cut(s)	452, 671
GluI	GCNGC	3 cut(s)	233, 236, 423
GsuI	CTGGAG	1 cut(s)	14
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	2 cut(s)	453, 672
Hin1II	CATG	7 cut(s)	129, 242, 393, 505, 529, 653, 753
Hin6I	GCGC	2 cut(s)	451, 670
HinP1I	GCGC	2 cut(s)	451, 670
HinfI	GANTC	4 cut(s)	98, 208, 397, 661
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	6 cut(s)	45, 65, 139, 345, 559, 660
Hpy188III	TCNNGA	6 cut(s)	95, 116, 408, 596, 686, 743
Hpy8I	GTNNAC	1 cut(s)	407
Hpy99I	CGWCG	2 cut(s)	45, 143
HpyAV	CCTTC	4 cut(s)	79, 148, 274, 683
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	3 cut(s)	304, 569, 704
HpyCH4V	TGCA	6 cut(s)	203, 227, 272, 296, 320, 501
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 269, 507, 678, 715
HpyF3I	CTNAG	4 cut(s)	54, 348, 657, 666
HpySE526I	ACGT	3 cut(s)	304, 569, 704
Hsp92II	CATG	7 cut(s)	129, 242, 393, 505, 529, 653, 753
HspAI	GCGC	2 cut(s)	451, 670
KpnI	GGTACC	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	36, 65, 220, 554, 739
LmnI	GCTCC	3 cut(s)	33, 255, 526
LpnPI	CCDG	7 cut(s)	17, 44, 117, 129, 203, 267, 699
Lsp1109I	GCAGC	3 cut(s)	244, 247, 434
MaeII	ACGT	3 cut(s)	304, 569, 704
MaeIII	GTNAC	2 cut(s)	460, 589
MalI	GATC	5 cut(s)	38, 67, 222, 556, 741
MboI	GATC	5 cut(s)	36, 65, 220, 554, 739
MboII	GAAGA	1 cut(s)	596
MflI	RGATCY	2 cut(s)	36, 220
MhlI	GDGCHC	1 cut(s)	720
MluCI	AATT	1 cut(s)	574
MmeI	TCCRAC	4 cut(s)	23, 162, 210, 466
Mph1103I	ATGCAT	1 cut(s)	503
MseI	TTAA	2 cut(s)	626, 754
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	3 cut(s)	274, 503, 523
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	14, 269, 507, 678, 715
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	5 cut(s)	36, 65, 220, 554, 739
NlaIII	CATG	7 cut(s)	129, 242, 393, 505, 529, 653, 753
NlaIV	GGNNCC	3 cut(s)	29, 251, 362
NsiI	ATGCAT	1 cut(s)	503
NspI	RCATGY	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PctI	GAATGC	3 cut(s)	274, 503, 523
PfeI	GAWTC	4 cut(s)	98, 208, 397, 661
PflMI	CCANNNNNTGG	2 cut(s)	370, 650
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	234, 237, 424
Ppu21I	YACGTR	2 cut(s)	305, 570
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	29, 251, 362
PspPI	GGNCC	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	36, 220
RsaI	GTAC	3 cut(s)	362, 572, 655
RsaNI	GTAC	3 cut(s)	361, 571, 654
SaqAI	TTAA	2 cut(s)	626, 754
SatI	GCNGC	3 cut(s)	233, 236, 423
Sau3AI	GATC	5 cut(s)	36, 65, 220, 554, 739
Sau96I	GGNCC	1 cut(s)	683
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	720
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	683
SnaBI	TACGTA	1 cut(s)	570
Sse9I	AATT	1 cut(s)	574
SsiI	CCGC	3 cut(s)	78, 647, 681
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	125, 465
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	3 cut(s)	307, 572, 707
TasI	AATT	1 cut(s)	574
TfiI	GAWTC	4 cut(s)	98, 208, 397, 661
Tru1I	TTAA	2 cut(s)	626, 754
Tru9I	TTAA	2 cut(s)	626, 754
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	3 cut(s)	232, 235, 422
TspDTI	ATGAA	3 cut(s)	281, 327, 471
TspGWI	ACGGA	2 cut(s)	29, 720
TspRI	CASTG	1 cut(s)	210
Van91I	CCANNNNNTGG	2 cut(s)	370, 650
VpaK11BI	GGWCC	1 cut(s)	683
XceI	RCATGY	1 cut(s)	753
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.