Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005464.1

Orthogroup ID

OG0016203

Physical Location & Seq

Genomic Coordinates Reverse (-)

99098 .. 103107

Gene Structure 4010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005464.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgctgcgccgactcgcctccactcggctccaagagatccgccgaatcttcactcagccttcttcggttcgatccttatccactgctctcaactaccatattgattcgccggagaacaatccagaacttccatgggagtttagcgatgttaacaaagagaaggcgaaagagatactttctcattatccatccaactacaagcagtctgcagtgattcctctgctggatcttgcacagcagcagcatggaggatggctccctgtttccgcaatgaatgcagtagcgaaggttatagaagttgctcctatacgtgtatatgaagttgcaacgttttattcaatgttcaacaggacaaaggtgggcaaatatcatcttctggtatgcggcacaacaccctgtatgattcgtggctcacgcgatattgaatcagctttactgaaacacctaggagtgaaacgcaatgaagtaaccaaggatggattattctctgtcggcgaaatggaatgcatgggatgctgtgtgaatgctcctatgattacagtggcagattactcaaatggatcggagggatatacatacaactattatgaagatgttactcccgagcgagttgtggaaatagttgagaagttgagaaaaggcgagaagcctccggctggcactcaaaatcctaagcgcattaagggtggaccagaaggaggaaatactacgttgctcagtgagccaaaacctcctccatgccgggatcttgatgcatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008137 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

2Fe-2S_thioredx

Protein Analysis

253

Amino Acids

28.22

Weight (kDa)

8.1

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02580
fragaria_vesca	FvH4_6g29310
malus_domestica	MD17G1215900.v1.1 MD17G1216000.v1.1
prunus_persica	Prupe.3G092100_v2.0.a1
pyrus_communis	pycom17g22060
rosa_chinensis	RchiOBHm_Chr2g0134501
rosa_laevigata	RLG00000019397
rosa_multiflora	Rmu_sc0005464.1_g000028
rosa_roxburghii	Rroxscaffold_2G00110160
rosa_rugosa	Rorug02G0317800
rosa_samantha	Rh2AG375500 Rh2CG354200 Rh2DG393300
rosa_wichuraiana	Rw2G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	417
AciI	CCGC	3 cut(s)	40, 267, 384
AclI	AACGTT	1 cut(s)	329
AclWI	GGATC	5 cut(s)	31, 66, 234, 568, 753
AfiI	CCNNNNNNNGG	3 cut(s)	24, 656, 698
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	339, 346, 425
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
AlwI	GGATC	5 cut(s)	31, 66, 234, 568, 753
Ama87I	CYCGRG	1 cut(s)	602
ApeKI	GCWGC	3 cut(s)	4, 238, 241
AspA2I	CCTAGG	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	9, 678
AspS9I	GGNCC	1 cut(s)	689
AsuC2I	CCSGG	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	689
AvrII	CCTAGG	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	250, 253
BccI	CCATC	3 cut(s)	196, 246, 470
BcnI	CCSGG	1 cut(s)	743
BfaI	CTAG	2 cut(s)	446, 760
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	4 cut(s)	5, 239, 242, 385
BlnI	CCTAGG	1 cut(s)	445
BlsI	GCNGC	4 cut(s)	6, 240, 243, 386
Bme1390I	CCNGG	1 cut(s)	743
Bme18I	GGWCC	1 cut(s)	689
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	2 cut(s)	29, 257
BmrFI	CCNGG	1 cut(s)	743
BmsI	GCATC	2 cut(s)	503, 742
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
Bpu10I	CCTNAGC	1 cut(s)	672
BpuMI	CCSGG	1 cut(s)	743
BsaAI	YACGTR	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	76
BsaJI	CCNNGG	3 cut(s)	131, 445, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 656, 698
Bse3DI	GCAATG	2 cut(s)	276, 466
Bse8I	GATNNNNATC	1 cut(s)	76
BseDI	CCNNGG	3 cut(s)	131, 445, 471
BseGI	GGATG	4 cut(s)	188, 257, 481, 518
BseJI	GATNNNNATC	1 cut(s)	76
BseLI	CCNNNNNNNGG	3 cut(s)	24, 656, 698
BseMI	GCAATG	2 cut(s)	276, 466
BseMII	CTCAG	2 cut(s)	68, 730
BseRI	GAGGAG	1 cut(s)	723
BseXI	GCAGC	2 cut(s)	250, 253
Bsh1236I	CGCG	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	3 cut(s)	110, 653, 742
BslI	CCNNNNNNNGG	3 cut(s)	24, 656, 698
BsmI	GAATGC	3 cut(s)	280, 509, 529
BsoBI	CYCGRG	1 cut(s)	602
Bsp143I	GATC	5 cut(s)	36, 71, 226, 560, 745
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	3 cut(s)	40, 267, 384
BspCNI	CTCAG	2 cut(s)	67, 729
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	29, 257
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	5 cut(s)	31, 66, 234, 568, 753
BsrDI	GCAATG	2 cut(s)	276, 466
BssECI	CCNNGG	3 cut(s)	131, 445, 471
BssMI	GATC	5 cut(s)	36, 71, 226, 560, 745
BssT1I	CCWWGG	3 cut(s)	131, 445, 471
Bst4CI	ACNGT	1 cut(s)	541
BstAPI	GCANNNNNTGC	2 cut(s)	275, 513
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	658, 757
BstDEI	CTNAG	3 cut(s)	54, 672, 716
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	4 cut(s)	188, 257, 481, 518
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	2 cut(s)	9, 678
BstKTI	GATC	5 cut(s)	39, 74, 229, 563, 748
BstMBI	GATC	5 cut(s)	36, 71, 226, 560, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 513, 721
BstNSI	RCATGY	1 cut(s)	759
BstSCI	CCNGG	1 cut(s)	741
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	250, 253
BstX2I	RGATCY	3 cut(s)	36, 226, 745
BstYI	RGATCY	3 cut(s)	36, 226, 745
BtgI	CCRYGG	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	188, 257, 481, 518
BtsI	GCAGTG	2 cut(s)	81, 216
BtsIMutI	CAGTG	4 cut(s)	81, 216, 546, 724
Cac8I	GCNNGC	2 cut(s)	658, 757
CfoI	GCGC	2 cut(s)	9, 678
Cfr13I	GGNCC	1 cut(s)	689
CviAII	CATG	5 cut(s)	132, 245, 508, 738, 756
CviJI	RGCY	8 cut(s)	28, 58, 256, 411, 431, 649, 656, 724
CviKI_1	RGCY	8 cut(s)	28, 58, 256, 411, 431, 649, 656, 724
DdeI	CTNAG	3 cut(s)	54, 672, 716
DpnI	GATC	5 cut(s)	38, 73, 228, 562, 747
DpnII	GATC	5 cut(s)	36, 71, 226, 560, 745
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	3 cut(s)	131, 445, 471
Eco47I	GGWCC	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	602
EcoT14I	CCWWGG	3 cut(s)	131, 445, 471
EcoT22I	ATGCAT	2 cut(s)	509, 757
ErhI	CCWWGG	3 cut(s)	131, 445, 471
FaeI	CATG	5 cut(s)	135, 248, 511, 741, 759
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	5 cut(s)	131, 244, 507, 737, 755
Fnu4HI	GCNGC	4 cut(s)	5, 239, 242, 385
FokI	GGATG	4 cut(s)	175, 264, 488, 525
Fsp4HI	GCNGC	4 cut(s)	5, 239, 242, 385
FspBI	CTAG	2 cut(s)	446, 760
GlaI	GCGC	2 cut(s)	8, 677
GluI	GCNGC	4 cut(s)	5, 239, 242, 385
HapII	CCGG	3 cut(s)	110, 653, 742
HhaI	GCGC	2 cut(s)	9, 678
Hin1II	CATG	5 cut(s)	135, 248, 511, 741, 759
Hin6I	GCGC	2 cut(s)	7, 676
HinP1I	GCGC	2 cut(s)	7, 676
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	6 cut(s)	12, 45, 104, 214, 403, 425
HpaI	GTTAAC	1 cut(s)	151
HpaII	CCGG	3 cut(s)	110, 653, 742
Hpy166II	GTNNAC	2 cut(s)	151, 689
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	3 cut(s)	122, 602, 749
Hpy8I	GTNNAC	2 cut(s)	151, 689
HpyAV	CCTTC	4 cut(s)	69, 154, 280, 689
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	3 cut(s)	310, 329, 710
HpyCH4V	TGCA	6 cut(s)	209, 233, 278, 326, 507, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 513, 721
HpyF3I	CTNAG	3 cut(s)	54, 672, 716
HpySE526I	ACGT	3 cut(s)	310, 329, 710
Hsp92II	CATG	5 cut(s)	135, 248, 511, 741, 759
HspAI	GCGC	2 cut(s)	7, 676
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	36, 71, 226, 560, 745
LmnI	GCTCC	4 cut(s)	33, 261, 307, 532
Lsp1109I	GCAGC	2 cut(s)	250, 253
LweI	GCATC	2 cut(s)	503, 742
MaeI	CTAG	2 cut(s)	446, 760
MaeII	ACGT	3 cut(s)	310, 329, 710
MaeIII	GTNAC	2 cut(s)	466, 595
MalI	GATC	5 cut(s)	38, 73, 228, 562, 747
MboI	GATC	5 cut(s)	36, 71, 226, 560, 745
MboII	GAAGA	4 cut(s)	40, 54, 365, 602
MflI	RGATCY	3 cut(s)	36, 226, 745
MlyI	GAGTC	1 cut(s)	6
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	8 cut(s)	28, 228, 242, 559, 660, 692, 741, 744
Mph1103I	ATGCAT	2 cut(s)	509, 757
MseI	TTAA	2 cut(s)	150, 681
MspI	CCGG	3 cut(s)	110, 653, 742
MspR9I	CCNGG	1 cut(s)	743
Mva1269I	GAATGC	3 cut(s)	280, 509, 529
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	275, 513, 721
NciI	CCSGG	1 cut(s)	743
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	5 cut(s)	36, 71, 226, 560, 745
NlaIII	CATG	5 cut(s)	135, 248, 511, 741, 759
NlaIV	GGNNCC	2 cut(s)	29, 257
NmeAIII	GCCGAG	1 cut(s)	4
NsiI	ATGCAT	2 cut(s)	509, 757
NspI	RCATGY	1 cut(s)	759
PaeI	GCATGC	1 cut(s)	759
PctI	GAATGC	3 cut(s)	280, 509, 529
PfeI	GAWTC	5 cut(s)	45, 104, 214, 403, 425
PkrI	GCNGC	4 cut(s)	6, 240, 243, 386
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
Ppu21I	YACGTR	1 cut(s)	311
Psp1406I	AACGTT	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	29, 257
PspPI	GGNCC	1 cut(s)	689
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	3 cut(s)	36, 226, 745
SaqAI	TTAA	2 cut(s)	150, 681
SatI	GCNGC	4 cut(s)	5, 239, 242, 385
Sau3AI	GATC	5 cut(s)	36, 71, 226, 560, 745
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	743
SetI	ASST	8 cut(s)	291, 313, 332, 360, 433, 447, 713, 733
SfaNI	GCATC	2 cut(s)	503, 742
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	689
SphI	GCATGC	1 cut(s)	759
SsiI	CCGC	3 cut(s)	40, 267, 384
SspMI	CTAG	2 cut(s)	446, 760
StyD4I	CCNGG	1 cut(s)	741
StyI	CCWWGG	3 cut(s)	131, 445, 471
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	3 cut(s)	313, 332, 713
TaqI	TCGA	1 cut(s)	70
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	5 cut(s)	45, 104, 214, 403, 425
Tru1I	TTAA	2 cut(s)	150, 681
Tru9I	TTAA	2 cut(s)	150, 681
TscAI	CASTG	4 cut(s)	88, 216, 546, 724
TseI	GCWGC	3 cut(s)	4, 238, 241
TspDTI	ATGAA	4 cut(s)	287, 333, 477, 603
TspRI	CASTG	4 cut(s)	88, 216, 546, 724
VpaK11BI	GGWCC	1 cut(s)	689
XceI	RCATGY	1 cut(s)	759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XmaJI	CCTAGG	1 cut(s)	445
XspI	CTAG	2 cut(s)	446, 760
Zsp2I	ATGCAT	2 cut(s)	509, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.