Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0016203

Physical Location & Seq

Genomic Coordinates Reverse (-)

47966863 .. 47970883

Gene Structure 4021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG354200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCTGGGCCGACTCGCCTCCACTCGGCTCCAAGAGATCCGCCGAATCTTCACTCAGCCTTCGTCGGTTCGATCCTTATCCACTGCTCTCAACTACCATATTGATTCGCCGGAGAACAATCCAGAACTTCCATGGGAGTTTAGTGATGTTAACAAAGAGAAGGCGAAAGAGATACTTTCTCATTATCCATCCAACTACAAGCAGTCCGCAGTGATTCCTCTGCTGGATCTTGCACAGCAGCAGCATGGAGGATGGCTCCCTGTTTCCGCAATGAATGCAGTAGCGAAGGTTATAGAAGTTGCTCCTATACGTGTATATGAAGTTGCAACGTTTTATTCAATGTTCAACAGGACAAAGGTGGGCAAATATCATCTTCTGGTATGCGGCACAACACCCTGTATGATTCGTGGCTCACGCGATATTGAATCAGCTTTACTGAAACACCTAGGAGTGAAACGCAATGAAGTAACCAAGGATGGATTATTCTCTGTCGGCGAAATGGAATGCATGGGATGCTGTGTGAATGCTCCTATGATTACAGTGGCAGATTACTCAAATGGATCGGAGGGATATACATACAACTATTATGAAGATGTTACTCCCGAGCGAGTTGTGGAAATAGTTGAGAAGTTAAGAAAAGGCGAGAAGCCTCCGGCTGGCACTCAAAATCCTAAGCGCATTAAGGGTGGACCAGAAGGAGGAAATACTACGTTGCTCAGTGAGCCAAAACCTCCTCCATGCCGGGATCTTGATGCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008137 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

2Fe-2S_thioredx

Protein Analysis

253

Amino Acids

28.12

Weight (kDa)

7.57

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2Fe-2S_thioredx	PF01257	56 - 211	2.5e-51	Thioredoxin-like [2Fe-2S] ferredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02580
fragaria_vesca	FvH4_6g29310
malus_domestica	MD17G1215900.v1.1 MD17G1216000.v1.1
prunus_persica	Prupe.3G092100_v2.0.a1
pyrus_communis	pycom17g22060
rosa_chinensis	RchiOBHm_Chr2g0134501
rosa_laevigata	RLG00000019397
rosa_multiflora	Rmu_sc0005464.1_g000028
rosa_roxburghii	Rroxscaffold_2G00110160
rosa_rugosa	Rorug02G0317800
rosa_samantha	Rh2AG375500 Rh2CG354200 Rh2DG393300
rosa_wichuraiana	Rw2G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	417
AciI	CCGC	4 cut(s)	40, 207, 267, 384
AclI	AACGTT	1 cut(s)	329
AclWI	GGATC	5 cut(s)	31, 66, 234, 568, 753
AfiI	CCNNNNNNNGG	3 cut(s)	24, 656, 698
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	339, 346, 425
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
AlwI	GGATC	5 cut(s)	31, 66, 234, 568, 753
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	2 cut(s)	238, 241
AspA2I	CCTAGG	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	7, 689
AsuC2I	CCSGG	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	689
AvrII	CCTAGG	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	250, 253
BccI	CCATC	3 cut(s)	196, 246, 470
BcnI	CCSGG	1 cut(s)	743
BfaI	CTAG	2 cut(s)	446, 760
BisI	GCNGC	3 cut(s)	239, 242, 385
BlnI	CCTAGG	1 cut(s)	445
BlsI	GCNGC	3 cut(s)	240, 243, 386
Bme1390I	CCNGG	1 cut(s)	743
Bme18I	GGWCC	1 cut(s)	689
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	2 cut(s)	7, 689
BmiI	GGNNCC	2 cut(s)	29, 257
BmrFI	CCNGG	1 cut(s)	743
BmsI	GCATC	2 cut(s)	503, 742
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
Bpu10I	CCTNAGC	1 cut(s)	672
BpuMI	CCSGG	1 cut(s)	743
BsaAI	YACGTR	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	76
BsaJI	CCNNGG	3 cut(s)	131, 445, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 656, 698
Bse3DI	GCAATG	2 cut(s)	276, 466
Bse8I	GATNNNNATC	1 cut(s)	76
BseDI	CCNNGG	3 cut(s)	131, 445, 471
BseGI	GGATG	4 cut(s)	188, 257, 481, 518
BseJI	GATNNNNATC	1 cut(s)	76
BseLI	CCNNNNNNNGG	3 cut(s)	24, 656, 698
BseMI	GCAATG	2 cut(s)	276, 466
BseMII	CTCAG	2 cut(s)	68, 730
BseRI	GAGGAG	1 cut(s)	723
BseXI	GCAGC	2 cut(s)	250, 253
BseYI	CCCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	3 cut(s)	110, 653, 742
BslI	CCNNNNNNNGG	3 cut(s)	24, 656, 698
BsmI	GAATGC	3 cut(s)	280, 509, 529
BsnI	GGCC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	602
Bsp143I	GATC	5 cut(s)	36, 71, 226, 560, 745
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	4 cut(s)	40, 207, 267, 384
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	67, 729
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	29, 257
BspPI	GGATC	5 cut(s)	31, 66, 234, 568, 753
BsrDI	GCAATG	2 cut(s)	276, 466
BssECI	CCNNGG	3 cut(s)	131, 445, 471
BssMI	GATC	5 cut(s)	36, 71, 226, 560, 745
BssT1I	CCWWGG	3 cut(s)	131, 445, 471
Bst4CI	ACNGT	1 cut(s)	541
BstAPI	GCANNNNNTGC	2 cut(s)	275, 513
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	658, 757
BstDEI	CTNAG	3 cut(s)	54, 672, 716
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	4 cut(s)	188, 257, 481, 518
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	678
BstKTI	GATC	5 cut(s)	39, 74, 229, 563, 748
BstMBI	GATC	5 cut(s)	36, 71, 226, 560, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 513, 721
BstNSI	RCATGY	1 cut(s)	759
BstSCI	CCNGG	1 cut(s)	741
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	250, 253
BstX2I	RGATCY	3 cut(s)	36, 226, 745
BstYI	RGATCY	3 cut(s)	36, 226, 745
BsuRI	GGCC	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	4 cut(s)	188, 257, 481, 518
BtsI	GCAGTG	2 cut(s)	81, 216
BtsIMutI	CAGTG	4 cut(s)	81, 216, 546, 724
Cac8I	GCNNGC	2 cut(s)	658, 757
CfoI	GCGC	1 cut(s)	678
Cfr13I	GGNCC	2 cut(s)	7, 689
CviAII	CATG	5 cut(s)	132, 245, 508, 738, 756
CviJI	RGCY	9 cut(s)	9, 28, 58, 256, 411, 431, 649, 656, 724
CviKI_1	RGCY	9 cut(s)	9, 28, 58, 256, 411, 431, 649, 656, 724
DdeI	CTNAG	3 cut(s)	54, 672, 716
DpnI	GATC	5 cut(s)	38, 73, 228, 562, 747
DpnII	GATC	5 cut(s)	36, 71, 226, 560, 745
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	3 cut(s)	131, 445, 471
Eco47I	GGWCC	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	602
EcoT14I	CCWWGG	3 cut(s)	131, 445, 471
EcoT22I	ATGCAT	2 cut(s)	509, 757
ErhI	CCWWGG	3 cut(s)	131, 445, 471
FaeI	CATG	5 cut(s)	135, 248, 511, 741, 759
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	5 cut(s)	131, 244, 507, 737, 755
Fnu4HI	GCNGC	3 cut(s)	239, 242, 385
FokI	GGATG	4 cut(s)	175, 264, 488, 525
Fsp4HI	GCNGC	3 cut(s)	239, 242, 385
FspBI	CTAG	2 cut(s)	446, 760
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	3 cut(s)	239, 242, 385
GsaI	CCCAGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	3 cut(s)	110, 653, 742
HhaI	GCGC	1 cut(s)	678
Hin1II	CATG	5 cut(s)	135, 248, 511, 741, 759
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	6 cut(s)	12, 45, 104, 214, 403, 425
HpaI	GTTAAC	1 cut(s)	151
HpaII	CCGG	3 cut(s)	110, 653, 742
Hpy166II	GTNNAC	2 cut(s)	151, 689
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	3 cut(s)	122, 602, 749
Hpy8I	GTNNAC	2 cut(s)	151, 689
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	4 cut(s)	69, 154, 280, 689
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	3 cut(s)	310, 329, 710
HpyCH4V	TGCA	5 cut(s)	233, 278, 326, 507, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 513, 721
HpyF3I	CTNAG	3 cut(s)	54, 672, 716
HpySE526I	ACGT	3 cut(s)	310, 329, 710
Hsp92II	CATG	5 cut(s)	135, 248, 511, 741, 759
HspAI	GCGC	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	36, 71, 226, 560, 745
LmnI	GCTCC	4 cut(s)	33, 261, 307, 532
Lsp1109I	GCAGC	2 cut(s)	250, 253
LweI	GCATC	2 cut(s)	503, 742
MaeI	CTAG	2 cut(s)	446, 760
MaeII	ACGT	3 cut(s)	310, 329, 710
MaeIII	GTNAC	2 cut(s)	466, 595
MalI	GATC	5 cut(s)	38, 73, 228, 562, 747
MboI	GATC	5 cut(s)	36, 71, 226, 560, 745
MboII	GAAGA	3 cut(s)	40, 365, 602
MflI	RGATCY	3 cut(s)	36, 226, 745
MlyI	GAGTC	1 cut(s)	6
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	8 cut(s)	28, 228, 242, 559, 660, 692, 741, 744
Mph1103I	ATGCAT	2 cut(s)	509, 757
MseI	TTAA	3 cut(s)	150, 632, 681
MspI	CCGG	3 cut(s)	110, 653, 742
MspR9I	CCNGG	1 cut(s)	743
Mva1269I	GAATGC	3 cut(s)	280, 509, 529
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	275, 513, 721
NciI	CCSGG	1 cut(s)	743
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	5 cut(s)	36, 71, 226, 560, 745
NlaIII	CATG	5 cut(s)	135, 248, 511, 741, 759
NlaIV	GGNNCC	2 cut(s)	29, 257
NmeAIII	GCCGAG	1 cut(s)	4
NsiI	ATGCAT	2 cut(s)	509, 757
NspI	RCATGY	1 cut(s)	759
PaeI	GCATGC	1 cut(s)	759
PctI	GAATGC	3 cut(s)	280, 509, 529
PfeI	GAWTC	5 cut(s)	45, 104, 214, 403, 425
PkrI	GCNGC	3 cut(s)	240, 243, 386
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
Ppu21I	YACGTR	1 cut(s)	311
Psp1406I	AACGTT	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	29, 257
PspPI	GGNCC	2 cut(s)	7, 689
PsuI	RGATCY	3 cut(s)	36, 226, 745
SaqAI	TTAA	3 cut(s)	150, 632, 681
SatI	GCNGC	3 cut(s)	239, 242, 385
Sau3AI	GATC	5 cut(s)	36, 71, 226, 560, 745
Sau96I	GGNCC	2 cut(s)	7, 689
SchI	GAGTC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	743
SetI	ASST	8 cut(s)	291, 313, 332, 360, 433, 447, 713, 733
SfaNI	GCATC	2 cut(s)	503, 742
SinI	GGWCC	1 cut(s)	689
SphI	GCATGC	1 cut(s)	759
SsiI	CCGC	4 cut(s)	40, 207, 267, 384
SspMI	CTAG	2 cut(s)	446, 760
StyD4I	CCNGG	1 cut(s)	741
StyI	CCWWGG	3 cut(s)	131, 445, 471
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	3 cut(s)	313, 332, 713
TaqI	TCGA	1 cut(s)	70
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	5 cut(s)	45, 104, 214, 403, 425
Tru1I	TTAA	3 cut(s)	150, 632, 681
Tru9I	TTAA	3 cut(s)	150, 632, 681
TscAI	CASTG	4 cut(s)	88, 216, 546, 724
TseI	GCWGC	2 cut(s)	238, 241
TspDTI	ATGAA	4 cut(s)	287, 333, 477, 603
TspRI	CASTG	4 cut(s)	88, 216, 546, 724
VpaK11BI	GGWCC	1 cut(s)	689
XceI	RCATGY	1 cut(s)	759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XmaJI	CCTAGG	1 cut(s)	445
XspI	CTAG	2 cut(s)	446, 760
Zsp2I	ATGCAT	2 cut(s)	509, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.