AT4G02725

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015916
Physical Location & Seq
Forward (+)
1204013 .. 1207436
3424 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02725.2

Sequence Viewer

Length: 498 bp
ATGGCAAGTCTCTCCATGTCCGCCGTGTCTCTGTCGCCGTTTCGGCCTCAAACAGAGAATCTTCTTTCAAAACTCAGTTTCCGAACGAACTTACACTCGTTCAATCTCAAACCAATAAGGATTAGTACGAAAGTTAGAAGTTTTGGTGGGAATCGGAGAGAGCCGAAGGATTCAAGATTTGTCGATGAAAAAGGCGTAGTTGATGACATGGAAGGTTTCTTAGACAATCTCTCTCTCGAATACGACTCTGTTTGGGACACTAAACCCTCTTGGTGTCAGCCATGGACGATAATGTTAACGGGTCTATCAATAGTGGCATGTAGCTGGGTAATACTACACTCGGTCATAGTTTCATCGCTTGCGGTTGGTGTAATTGGTGCTTGGTGGTACATATTCCTTTATAGCTACCCAAAGTCGTATTCAGAAATGATTGCTGAAAGAAGGAAACGAGTAGCTGATGGTTTTGAAGATATTTACGGCAAAAACAAGCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.8

Weight (kDa)

8.88

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6737 PF20522 83 - 138 8.8e-26 Domain of unknown function (DUF6737)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02725 AT4G02725
fragaria_vesca FvH4_2g23371
malus_domestica MD11G1284000.v1.1
prunus_persica Prupe.8G239600_v2.0.a1
pyrus_communis pycom11g25150
rosa_chinensis RchiOBHm_Chr6g0290831
rosa_laevigata RLG00000012170
rosa_multiflora Rmu_sc0009276.1_g000008
rosa_roxburghii Rroxscaffold_7G00176680
rosa_rugosa Rorug06G0215000
rosa_samantha Rh6AG325600 Rh6BG333300 Rh6CG339000
rosa_wichuraiana Rw6G028310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 362
AfaI GTAC 2 cut(s) 127, 389
AgsI TTSAA 4 cut(s) 69, 103, 174, 467
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AluBI AGCT 3 cut(s) 324, 405, 455
AluI AGCT 3 cut(s) 324, 405, 455
Alw26I GTCTC 2 cut(s) 14, 33
AoxI GGCC 1 cut(s) 44
BccI CCATC 1 cut(s) 452
BceAI ACGGC 3 cut(s) 8, 22, 493
BcoDI GTCTC 2 cut(s) 14, 33
BglI GCCNNNNNGGC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 88
BseYI CCCAGC 1 cut(s) 324
BshFI GGCC 1 cut(s) 46
BslFI GGGAC 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 14, 33
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 281
BspACI CCGC 2 cut(s) 21, 362
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 2 cut(s) 74, 220
BstDSI CCRYGG 1 cut(s) 281
BstMAI GTCTC 2 cut(s) 14, 33
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 321
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 360
Csp6I GTAC 2 cut(s) 126, 388
CviAII CATG 4 cut(s) 16, 208, 282, 318
CviJI RGCY 7 cut(s) 46, 163, 280, 324, 405, 455, 490
CviKI_1 RGCY 7 cut(s) 46, 163, 280, 324, 405, 455, 490
CviQI GTAC 2 cut(s) 126, 388
DdeI CTNAG 2 cut(s) 74, 220
EciI GGCGGA 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 4 cut(s) 19, 211, 285, 321
FaiI YATR 8 cut(s) 17, 209, 283, 319, 347, 392, 402, 496
FaqI GGGAC 1 cut(s) 269
FatI CATG 4 cut(s) 15, 207, 281, 317
GsaI CCCAGC 1 cut(s) 328
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 4 cut(s) 19, 211, 285, 321
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 4 cut(s) 58, 151, 170, 245
HpaI GTTAAC 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 3 cut(s) 83, 156, 424
Hpy188III TCNNGA 2 cut(s) 174, 236
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 3 cut(s) 160, 206, 435
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 2 cut(s) 74, 220
Hsp92II CATG 4 cut(s) 19, 211, 285, 321
KspAI GTTAAC 1 cut(s) 297
LpnPI CCDG 1 cut(s) 310
MboII GAAGA 2 cut(s) 53, 479
MluCI AATT 1 cut(s) 372
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 2 cut(s) 57, 277
MseI TTAA 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 43
NcoI CCATGG 1 cut(s) 281
NlaIII CATG 4 cut(s) 19, 211, 285, 321
NspI RCATGY 1 cut(s) 321
PfeI GAWTC 3 cut(s) 58, 151, 170
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PspFI CCCAGC 1 cut(s) 324
RsaI GTAC 2 cut(s) 127, 389
RsaNI GTAC 2 cut(s) 126, 388
SaqAI TTAA 1 cut(s) 296
SchI GAGTC 1 cut(s) 239
SetI ASST 4 cut(s) 217, 326, 407, 457
Sse9I AATT 1 cut(s) 372
SsiI CCGC 2 cut(s) 21, 362
StyI CCWWGG 1 cut(s) 281
TaqI TCGA 2 cut(s) 183, 237
TaqII GACCGA 1 cut(s) 331
TasI AATT 1 cut(s) 372
TfiI GAWTC 3 cut(s) 58, 151, 170
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 201, 342, 483
XceI RCATGY 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.