FvH4_2g23371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015916
Physical Location & Seq
Forward (+)
19134758 .. 19135751
994 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23371.t1

Sequence Viewer

Length: 507 bp
ATGGGGACTCTATCTCTCTTCCCTACTCTCTATGCTCCTTTGCGAACCCATCTCTCATCTTCGAAAACCCATCTGTGCAACCCCATTTTCTTGCCACACGTCTCTGTAACTTATCCTCAACAGAGACGCTTTCGCAGCAAGAATGTTGTTTTCGGTAGCAAATCAGTTGACCCGAAGGAGTCCCAGTTCTTTGATGAAGATGGAGCTGTGGACGACATGGATGGCTACATGAACTACCTCTCTCTTGAATATGACTCTGTCTGGGACACTAAACCTTCCTGGTGCCAACCATGGACAATTACCCTAACCGGAGTGCTAGTGATTGCGTTTAGCTGGCTGATTCTGCACTCAGTATTAGCCACAGGCGTTGTAGTCTTCCTAATTGGCTTATGGTGGTATATCTTTCTGTACTCTTACCCAAAGGCTTATGCAGATATGATTGCTGAGCGGAGGAAGAGGGTGTCCAACGGTGTTGAAGACACTTTTGGGTTGAGGGAAACCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.36

Weight (kDa)

6.9

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6737 PF20522 86 - 142 3.9e-27 Domain of unknown function (DUF6737)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02725 AT4G02725
fragaria_vesca FvH4_2g23371
malus_domestica MD11G1284000.v1.1
prunus_persica Prupe.8G239600_v2.0.a1
pyrus_communis pycom11g25150
rosa_chinensis RchiOBHm_Chr6g0290831
rosa_laevigata RLG00000012170
rosa_multiflora Rmu_sc0009276.1_g000008
rosa_roxburghii Rroxscaffold_7G00176680
rosa_rugosa Rorug06G0215000
rosa_samantha Rh6AG325600 Rh6BG333300 Rh6CG339000
rosa_wichuraiana Rw6G028310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AccBSI CCGCTC 1 cut(s) 448
AciI CCGC 1 cut(s) 448
AfaI GTAC 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 2 cut(s) 248, 476
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 278
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 2 cut(s) 206, 333
AluI AGCT 2 cut(s) 206, 333
Alw26I GTCTC 2 cut(s) 106, 118
ApeKI GCWGC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 502
AsuII TTCGAA 1 cut(s) 62
BanI GGYRCC 1 cut(s) 282
BbsI GAAGAC 2 cut(s) 367, 483
BbvI GCAGC 1 cut(s) 147
BccI CCATC 4 cut(s) 57, 78, 194, 215
BciT130I CCWGG 1 cut(s) 280
BcnI CCSGG 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 106, 118
BfaI CTAG 1 cut(s) 317
BisI GCNGC 1 cut(s) 136
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 137
Bme1390I CCNGG 2 cut(s) 280, 502
BmgBI CACGTC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 2 cut(s) 280, 502
BmrI ACTGGG 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 2 cut(s) 367, 483
Bpu1102I GCTNAGC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 502
BsaJI CCNNGG 1 cut(s) 290
BsaWI WCCGGW 1 cut(s) 308
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 303, 333
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 363, 435
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 309, 502
BslFI GGGAC 3 cut(s) 19, 166, 278
BsmAI GTCTC 2 cut(s) 106, 118
BsmBI CGTCTC 2 cut(s) 106, 118
BsmFI GGGAC 3 cut(s) 19, 166, 278
Bsp119I TTCGAA 1 cut(s) 62
Bsp1720I GCTNAGC 1 cut(s) 444
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 1 cut(s) 448
BspCNI CTCAG 2 cut(s) 362, 436
BspLI GGNNCC 1 cut(s) 284
BspT104I TTCGAA 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 282
BsrBI CCGCTC 1 cut(s) 448
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 2 cut(s) 23, 449
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 349, 444
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 106, 118
BstMWI GCNNNNNNNGC 2 cut(s) 135, 343
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 278, 500
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 2 cut(s) 367, 483
BtgI CCRYGG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 335
CseI GACGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 409
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 3 cut(s) 217, 229, 291
CviJI RGCY 7 cut(s) 206, 225, 333, 337, 359, 387, 425
CviKI_1 RGCY 7 cut(s) 206, 225, 333, 337, 359, 387, 425
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 2 cut(s) 349, 444
Eam1104I CTCTTC 2 cut(s) 23, 449
EarI CTCTTC 2 cut(s) 23, 449
Eco130I CCWWGG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
Esp3I CGTCTC 2 cut(s) 106, 118
FaeI CATG 3 cut(s) 220, 232, 294
FaiI YATR 9 cut(s) 33, 218, 230, 252, 292, 391, 399, 429, 437
FaqI GGGAC 3 cut(s) 19, 166, 278
FatI CATG 3 cut(s) 216, 228, 290
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 1 cut(s) 317
GluI GCNGC 1 cut(s) 136
HapII CCGG 2 cut(s) 309, 502
HgaI GACGC 1 cut(s) 135
Hin1II CATG 3 cut(s) 220, 232, 294
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 4 cut(s) 7, 179, 254, 340
HpaII CCGG 2 cut(s) 309, 502
Hpy166II GTNNAC 2 cut(s) 169, 211
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 2 cut(s) 169, 211
HpyAV CCTTC 2 cut(s) 169, 285
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 78, 346, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 343
HpyF3I CTNAG 2 cut(s) 349, 444
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 3 cut(s) 220, 232, 294
LmnI GCTCC 2 cut(s) 40, 203
LpnPI CCDG 7 cut(s) 197, 247, 265, 292, 319, 322, 348
Lsp1109I GCAGC 1 cut(s) 147
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 106
MbiI CCGCTC 1 cut(s) 448
MboII GAAGA 6 cut(s) 10, 51, 209, 367, 466, 488
MluCI AATT 2 cut(s) 297, 381
MlyI GAGTC 2 cut(s) 188, 248
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 5 cut(s) 126, 248, 444, 450, 486
MspI CCGG 2 cut(s) 309, 502
MspR9I CCNGG 2 cut(s) 280, 502
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 135, 343
NciI CCSGG 1 cut(s) 502
NcoI CCATGG 1 cut(s) 290
NlaIII CATG 3 cut(s) 220, 232, 294
NlaIV GGNNCC 1 cut(s) 284
NspV TTCGAA 1 cut(s) 62
PfeI GAWTC 1 cut(s) 340
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 2 cut(s) 187, 248
PpsI GAGTC 2 cut(s) 187, 248
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 284
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
SatI GCNGC 1 cut(s) 136
SchI GAGTC 2 cut(s) 188, 248
ScrFI CCNGG 2 cut(s) 280, 502
SetI ASST 5 cut(s) 102, 208, 240, 277, 335
SfuI TTCGAA 1 cut(s) 62
Sse9I AATT 2 cut(s) 297, 381
SsiI CCGC 1 cut(s) 448
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 2 cut(s) 278, 500
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 62
TasI AATT 2 cut(s) 297, 381
TatI WGTACW 1 cut(s) 408
TfiI GAWTC 1 cut(s) 340
TseI GCWGC 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 210, 245
Tth111I GACNNNGTC 1 cut(s) 257
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.