Prupe.8G239600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015916
Physical Location & Seq
Forward (+)
21051228 .. 21052249
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G239600.1

Sequence Viewer

Length: 510 bp
ATGGGAACTTTATCTCTCCTCCCTCTCCCCCTCTGCTCTCCACTGCGCCCCCGTCTGGCCTCTTCACAAACCCATCTCTGCAACCCCGTTTCCTGGCCACTCGTCTCTTTAACTTATCCGACGCCAAGAAGACTTCGCAGCAAAAATGTTGTCTTTGGCAGCAATTCGATTGACCCAAAAGAGTCCGAGTTCTTGGATGAAAACGGAGTTGTTGATGATATGGATGGCTACATGAACTACCTTTCTCTTGAATATGATTCTGTTTGGGACACAAAGCCATCCTGGTGTCAGCCATGGACAATTACACTGACTGGAGTGCTGGTGATTGGTGGTAGCTGGCTTATTCTGAACTCAGTAGTAATTACAGTCTTGGCAGCCTTACTAATTAGCACATGGTGGTTCATCTTTCTGTATTCTTACCCAAAGGCATATGCAGATATGATCGCTGAGCGGAGGAGCAGGGTGACCAATGGTGTTGAAGACACCTTTGGTTTAGGGAAGAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.98

Weight (kDa)

5.32

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02725 AT4G02725
fragaria_vesca FvH4_2g23371
malus_domestica MD11G1284000.v1.1
prunus_persica Prupe.8G239600_v2.0.a1
pyrus_communis pycom11g25150
rosa_chinensis RchiOBHm_Chr6g0290831
rosa_laevigata RLG00000012170
rosa_multiflora Rmu_sc0009276.1_g000008
rosa_roxburghii Rroxscaffold_7G00176680
rosa_rugosa Rorug06G0215000
rosa_samantha Rh6AG325600 Rh6BG333300 Rh6CG339000
rosa_wichuraiana Rw6G028310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 451
AciI CCGC 1 cut(s) 451
AcoI YGGCCR 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 122
AdeI CACNNNGTG 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 55, 93
AgsI TTSAA 2 cut(s) 251, 479
AjnI CCWGG 2 cut(s) 92, 281
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AluBI AGCT 1 cut(s) 336
AluI AGCT 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 109
AoxI GGCC 2 cut(s) 57, 95
ApeKI GCWGC 3 cut(s) 138, 159, 374
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspLEI GCGC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 334, 475
BalI TGGCCA 1 cut(s) 97
BbsI GAAGAC 2 cut(s) 136, 486
BbvI GCAGC 3 cut(s) 150, 171, 386
BccI CCATC 3 cut(s) 81, 218, 286
BciT130I CCWGG 2 cut(s) 94, 283
BcoDI GTCTC 1 cut(s) 109
BisI GCNGC 3 cut(s) 139, 160, 375
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 3 cut(s) 140, 161, 376
Bme1390I CCNGG 2 cut(s) 94, 283
BmrFI CCNGG 2 cut(s) 94, 283
BpiI GAAGAC 2 cut(s) 136, 486
BpmI CTGGAG 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 93
Bse1I ACTGG 2 cut(s) 316, 505
BseBI CCWGG 2 cut(s) 94, 283
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 3 cut(s) 202, 229, 278
BseLI CCNNNNNNNGG 2 cut(s) 55, 93
BseMII CTCAG 2 cut(s) 366, 438
BseNI ACTGG 2 cut(s) 316, 505
BseRI GAGGAG 2 cut(s) 8, 469
BseXI GCAGC 3 cut(s) 150, 171, 386
BshFI GGCC 2 cut(s) 59, 97
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 55, 93
BsmAI GTCTC 1 cut(s) 109
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 2 cut(s) 59, 97
Bsp143I GATC 1 cut(s) 441
Bsp1720I GCTNAGC 1 cut(s) 447
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 1 cut(s) 451
BspANI GGCC 2 cut(s) 59, 97
BspCNI CTCAG 2 cut(s) 365, 439
BspQI GCTCTTC 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 451
BsrI ACTGG 2 cut(s) 316, 505
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 2 cut(s) 94, 283
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 67, 494
BstACI GRCGYC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 352, 447
BstDSI CCRYGG 1 cut(s) 293
BstEII GGTNACC 1 cut(s) 463
BstF5I GGATG 3 cut(s) 202, 229, 278
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 1 cut(s) 444
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 441
BstNI CCWGG 2 cut(s) 94, 283
BstPI GGTNACC 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 92, 281
BstV1I GCAGC 3 cut(s) 150, 171, 386
BstV2I GAAGAC 2 cut(s) 136, 486
BsuRI GGCC 2 cut(s) 59, 97
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 3 cut(s) 202, 229, 278
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 41, 305
Cac8I GCNNGC 1 cut(s) 338
CfoI GCGC 1 cut(s) 48
CseI GACGC 1 cut(s) 130
CviAII CATG 3 cut(s) 232, 294, 393
CviJI RGCY 9 cut(s) 59, 97, 228, 277, 292, 336, 340, 377, 504
CviKI_1 RGCY 9 cut(s) 59, 97, 228, 277, 292, 336, 340, 377, 504
DdeI CTNAG 2 cut(s) 352, 447
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
DraIII CACNNNGTG 1 cut(s) 396
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 2 cut(s) 67, 494
EarI CTCTTC 2 cut(s) 67, 494
Eco130I CCWWGG 1 cut(s) 293
Eco91I GGTNACC 1 cut(s) 463
EcoO65I GGTNACC 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 92, 281
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 3 cut(s) 235, 297, 396
FaiI YATR 8 cut(s) 221, 233, 255, 295, 394, 430, 432, 440
FaqI GGGAC 1 cut(s) 281
FatI CATG 3 cut(s) 231, 293, 392
FauNDI CATATG 1 cut(s) 430
Fnu4HI GCNGC 3 cut(s) 139, 160, 375
FokI GGATG 3 cut(s) 209, 236, 265
Fsp4HI GCNGC 3 cut(s) 139, 160, 375
GlaI GCGC 1 cut(s) 47
GluI GCNGC 3 cut(s) 139, 160, 375
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 2 cut(s) 59, 97
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 3 cut(s) 235, 297, 396
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 2 cut(s) 182, 257
HphI GGTGA 2 cut(s) 334, 475
Hpy188I TCNGA 3 cut(s) 120, 187, 348
Hpy188III TCNNGA 1 cut(s) 248
Hpy99I CGWCG 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 2 cut(s) 81, 434
HpyF3I CTNAG 2 cut(s) 352, 447
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 3 cut(s) 235, 297, 396
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 441
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 1 cut(s) 456
LpnPI CCDG 9 cut(s) 41, 79, 106, 268, 295, 297, 305, 322, 445
Lsp1109I GCAGC 3 cut(s) 150, 171, 386
MaeIII GTNAC 1 cut(s) 463
MalI GATC 1 cut(s) 443
MbiI CCGCTC 1 cut(s) 451
MboI GATC 1 cut(s) 441
MboII GAAGA 3 cut(s) 54, 141, 491
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 4 cut(s) 163, 300, 360, 384
MluNI TGGCCA 1 cut(s) 97
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 5 cut(s) 29, 33, 41, 70, 447
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 1 cut(s) 110
MslI CAYNNNNRTG 1 cut(s) 283
Msp20I TGGCCA 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 94, 283
MvaI CCWGG 2 cut(s) 94, 283
NcoI CCATGG 1 cut(s) 293
NdeI CATATG 1 cut(s) 430
NdeII GATC 1 cut(s) 441
NlaIII CATG 3 cut(s) 235, 297, 396
NmuCI GTSAC 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 494
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 140, 161, 376
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 92, 281
PspEI GGTNACC 1 cut(s) 463
PspGI CCWGG 2 cut(s) 92, 281
RseI CAYNNNNRTG 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 3 cut(s) 139, 160, 375
Sau3AI GATC 1 cut(s) 441
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 94, 283
SetI ASST 3 cut(s) 243, 338, 488
SmiMI CAYNNNNRTG 1 cut(s) 283
Sse9I AATT 4 cut(s) 163, 300, 360, 384
SsiI CCGC 1 cut(s) 451
StyD4I CCNGG 2 cut(s) 92, 281
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 1 cut(s) 167
TasI AATT 4 cut(s) 163, 300, 360, 384
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 2 cut(s) 48, 312
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 3 cut(s) 138, 159, 374
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 3 cut(s) 213, 248, 391
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 2 cut(s) 48, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.