MD11G1284000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015916
Physical Location & Seq
Forward (+)
40191705 .. 40192916
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1284000.v1.1.491

Sequence Viewer

Length: 516 bp
ATGGGAACTCTATCTCTCTCCCCTCTTCTCTCCCTCCATTCTCCACCACGACCCCGTCTCACCTCTGCACAAACCCATCTCTGCAACCCCGTCTCCGGCCCACACATCTCCGTAACTTATCCGAAGCCGACGAGATTTCGCAGCGAAAATGTCGTCGTCTTTGGCAGCAATTCAATCGACCCGAAAGAGTCGCAGTTCTTGGACGAAGACGGAGTTGTGGATGACATGGATGGCTACATGAACTACCTTTCTCTTGAATACGACTCCGTTTGGGACACCAAGCCATCCTGGTGTCAGCCATGGACAATTACGCTGACTGGAGTGGTAGTGATTGGTGGTAGCTGGTTGATTCTGCACTCAGTAGTCGTGACAATCTTGGCAACCTTACTAATTAGCACTTGGTGGTACATCTTTCTCTATTCTTACCCTAAGGCGTATGCGGATATGATTGCCGAGCGGCGGAGCAAGGTGAACAATGGCGTTGAAGACACTTTTGGTTTTGGGAAGAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.16

Weight (kDa)

5.45

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6737 PF20522 89 - 145 5e-28 Domain of unknown function (DUF6737)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02725 AT4G02725
fragaria_vesca FvH4_2g23371
malus_domestica MD11G1284000.v1.1
prunus_persica Prupe.8G239600_v2.0.a1
pyrus_communis pycom11g25150
rosa_chinensis RchiOBHm_Chr6g0290831
rosa_laevigata RLG00000012170
rosa_multiflora Rmu_sc0009276.1_g000008
rosa_roxburghii Rroxscaffold_7G00176680
rosa_rugosa Rorug06G0215000
rosa_samantha Rh6AG325600 Rh6BG333300 Rh6CG339000
rosa_wichuraiana Rw6G028310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 457
AciI CCGC 3 cut(s) 440, 457, 460
AdeI CACNNNGTG 1 cut(s) 402
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 2 cut(s) 95, 459
AgsI TTSAA 3 cut(s) 174, 257, 485
AjnI CCWGG 1 cut(s) 287
AjuI GAANNNNNNNTTGG 2 cut(s) 477, 509
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw26I GTCTC 2 cut(s) 62, 97
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 2 cut(s) 141, 165
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 52, 481
AxyI CCTNAGG 1 cut(s) 429
BbsI GAAGAC 2 cut(s) 213, 492
BbvI GCAGC 2 cut(s) 153, 177
BccI CCATC 3 cut(s) 84, 224, 292
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 62, 97
BisI GCNGC 3 cut(s) 142, 166, 458
BlsI GCNGC 3 cut(s) 143, 167, 459
Bme1390I CCNGG 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 213, 492
BpmI CTGGAG 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 299
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 312, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 459
Bse1I ACTGG 1 cut(s) 322
Bse21I CCTNAGG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 3 cut(s) 226, 235, 284
BseLI CCNNNNNNNGG 2 cut(s) 95, 459
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 322
BseXI GCAGC 2 cut(s) 153, 177
BsgI GTGCAG 2 cut(s) 51, 338
BshFI GGCC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 95, 459
BsmAI GTCTC 2 cut(s) 62, 97
BsmBI CGTCTC 2 cut(s) 62, 97
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 3 cut(s) 440, 457, 460
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 371
BspQI GCTCTTC 1 cut(s) 500
BsrBI CCGCTC 1 cut(s) 457
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 30, 500
BstDEI CTNAG 2 cut(s) 358, 429
BstDSI CCRYGG 1 cut(s) 299
BstF5I GGATG 3 cut(s) 226, 235, 284
BstMAI GTCTC 2 cut(s) 62, 97
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 153, 177
BstV2I GAAGAC 2 cut(s) 213, 492
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 299
BtsCI GGATG 3 cut(s) 226, 235, 284
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 406
CviAII CATG 3 cut(s) 226, 238, 300
CviJI RGCY 7 cut(s) 99, 127, 234, 283, 298, 342, 510
CviKI_1 RGCY 7 cut(s) 99, 127, 234, 283, 298, 342, 510
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 2 cut(s) 358, 429
DraIII CACNNNGTG 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 30, 500
EarI CTCTTC 2 cut(s) 30, 500
EciI GGCGGA 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 299
Eco81I CCTNAGG 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 2 cut(s) 62, 97
FaeI CATG 3 cut(s) 229, 241, 303
FaiI YATR 5 cut(s) 227, 239, 301, 438, 446
FaqI GGGAC 1 cut(s) 287
FatI CATG 3 cut(s) 225, 237, 299
Fnu4HI GCNGC 3 cut(s) 142, 166, 458
FokI GGATG 3 cut(s) 233, 242, 271
Fsp4HI GCNGC 3 cut(s) 142, 166, 458
GluI GCNGC 3 cut(s) 142, 166, 458
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 96
Hin1II CATG 3 cut(s) 229, 241, 303
HinfI GANTC 3 cut(s) 188, 263, 349
HpaII CCGG 1 cut(s) 96
HphI GGTGA 2 cut(s) 52, 481
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 254, 367
Hpy8I GTNNAC 1 cut(s) 472
Hpy99I CGWCG 2 cut(s) 133, 158
HpyCH4V TGCA 3 cut(s) 68, 84, 355
HpyF3I CTNAG 2 cut(s) 358, 429
Hsp92II CATG 3 cut(s) 229, 241, 303
LguI GCTCTTC 1 cut(s) 500
LmnI GCTCC 1 cut(s) 462
LpnPI CCDG 5 cut(s) 109, 274, 301, 303, 328
Lsp1109I GCAGC 2 cut(s) 153, 177
MaeIII GTNAC 2 cut(s) 112, 367
MbiI CCGCTC 1 cut(s) 457
MboII GAAGA 3 cut(s) 17, 218, 497
MluCI AATT 3 cut(s) 169, 306, 390
MlyI GAGTC 2 cut(s) 197, 257
MnlI CCTC 3 cut(s) 33, 44, 73
MslI CAYNNNNRTG 1 cut(s) 289
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
NcoI CCATGG 1 cut(s) 299
NlaIII CATG 3 cut(s) 229, 241, 303
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 349
PflFI GACNNNGTC 1 cut(s) 54
PkrI GCNGC 3 cut(s) 143, 167, 459
PleI GAGTC 2 cut(s) 196, 257
PpsI GAGTC 2 cut(s) 196, 257
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspPI GGNCC 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 54
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 289
SapI GCTCTTC 1 cut(s) 500
SatI GCNGC 3 cut(s) 142, 166, 458
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 2 cut(s) 197, 257
ScrFI CCNGG 1 cut(s) 289
SetI ASST 5 cut(s) 65, 249, 344, 386, 471
SmiMI CAYNNNNRTG 1 cut(s) 289
Sse9I AATT 3 cut(s) 169, 306, 390
SsiI CCGC 3 cut(s) 440, 457, 460
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 299
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 169, 306, 390
TauI GCSGC 1 cut(s) 460
TfiI GAWTC 1 cut(s) 349
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 2 cut(s) 141, 165
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 3 cut(s) 100, 225, 256
Tth111I GACNNNGTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.