Rw6G028310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015916
Physical Location & Seq
Forward (+)
52285961 .. 52286950
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028310.1

Sequence Viewer

Length: 471 bp
ATGGGGACTCTCTCTCTCTTCCCTACTTCTCTCTATGGTCCTCTGCGAACCCATCTCTCATCTTCAAAAACCCATCTCTGCAATTCATTTTCTTGCCACACCAAGAATGTTGCTTTCGGTAGCAAATCAGTTGATCCACAGGAGTCCCAGTTCTTTGATGAAGATGGAGCTGTGGATGACATGGATGGCTACATGAACTACCTTTCTCTTGAATATGACTCCGTTTGGGACACTAAACCTTCCTGGTGCCAACCATGGACAATTACACTGACCGGAGTGCTAGTGATTGCGTTTAGCTGGCTGATTTTGCACTCAGTATTAGCCACAGGCGTTGTAGTCTTCCTAATTGGCTTATGGTGGTACATCTTTCTGTATTCATACCCAAAGGCGTATGCAGATATGATTGCCGAGCGGAGGAAGAGGGTGTCCAACGGTGTTGAAGACACCTTTGGAATGGGGGAGACGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.68

Weight (kDa)

5.2

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6737 PF20522 74 - 130 3.3e-27 Domain of unknown function (DUF6737)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02725 AT4G02725
fragaria_vesca FvH4_2g23371
malus_domestica MD11G1284000.v1.1
prunus_persica Prupe.8G239600_v2.0.a1
pyrus_communis pycom11g25150
rosa_chinensis RchiOBHm_Chr6g0290831
rosa_laevigata RLG00000012170
rosa_multiflora Rmu_sc0009276.1_g000008
rosa_roxburghii Rroxscaffold_7G00176680
rosa_rugosa Rorug06G0215000
rosa_samantha Rh6AG325600 Rh6BG333300 Rh6CG339000
rosa_wichuraiana Rw6G028310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 412
AccII CGCG 1 cut(s) 466
AciI CCGC 2 cut(s) 412, 466
AclWI GGATC 1 cut(s) 128
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 3 cut(s) 66, 212, 440
AjnI CCWGG 1 cut(s) 242
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 2 cut(s) 170, 297
AluI AGCT 2 cut(s) 170, 297
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 38
AvaII GGWCC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 331, 447
BccI CCATC 4 cut(s) 60, 81, 158, 179
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 2 cut(s) 331, 447
BsaJI CCNNGG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 5 cut(s) 134, 164, 267, 297, 452
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 2 cut(s) 181, 190
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 3 cut(s) 19, 130, 242
BslI CCNNNNNNNGG 1 cut(s) 414
BsmAI GTCTC 1 cut(s) 455
BsmBI CGTCTC 1 cut(s) 455
BsmFI GGGAC 3 cut(s) 19, 130, 242
Bsp143I GATC 1 cut(s) 133
Bsp19I CCATGG 1 cut(s) 254
BspACI CCGC 2 cut(s) 412, 466
BspCNI CTCAG 1 cut(s) 326
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 412
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 2 cut(s) 23, 413
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 313
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 181, 190
BstFNI CGCG 1 cut(s) 466
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstUI CGCG 1 cut(s) 466
BstV2I GAAGAC 2 cut(s) 331, 447
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 2 cut(s) 181, 190
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 361
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 3 cut(s) 181, 193, 255
CviJI RGCY 6 cut(s) 170, 189, 297, 301, 323, 351
CviKI_1 RGCY 6 cut(s) 170, 189, 297, 301, 323, 351
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 1 cut(s) 313
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 23, 413
EarI CTCTTC 2 cut(s) 23, 413
Eco130I CCWWGG 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 3 cut(s) 184, 196, 258
FaiI YATR 9 cut(s) 36, 182, 194, 216, 256, 355, 379, 393, 401
FaqI GGGAC 3 cut(s) 19, 130, 242
FatI CATG 3 cut(s) 180, 192, 254
FokI GGATG 2 cut(s) 188, 197
FspBI CTAG 1 cut(s) 281
HapII CCGG 1 cut(s) 273
Hin1II CATG 3 cut(s) 184, 196, 258
HinfI GANTC 3 cut(s) 7, 143, 218
HpaII CCGG 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4V TGCA 3 cut(s) 81, 310, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 1 cut(s) 313
Hsp92II CATG 3 cut(s) 184, 196, 258
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 7 cut(s) 125, 161, 229, 256, 283, 286, 312
MaeI CTAG 1 cut(s) 281
MalI GATC 1 cut(s) 135
MbiI CCGCTC 1 cut(s) 412
MboI GATC 1 cut(s) 133
MboII GAAGA 6 cut(s) 10, 54, 173, 331, 430, 452
MluCI AATT 3 cut(s) 82, 261, 345
MlyI GAGTC 2 cut(s) 152, 212
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 3 cut(s) 51, 408, 414
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 1 cut(s) 307
NcoI CCATGG 1 cut(s) 254
NdeII GATC 1 cut(s) 133
NlaIII CATG 3 cut(s) 184, 196, 258
NlaIV GGNNCC 1 cut(s) 248
NmeAIII GCCGAG 1 cut(s) 433
PleI GAGTC 2 cut(s) 151, 212
PpsI GAGTC 2 cut(s) 151, 212
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 38
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 2 cut(s) 152, 212
ScrFI CCNGG 1 cut(s) 244
SetI ASST 5 cut(s) 172, 204, 241, 299, 449
SinI GGWCC 1 cut(s) 38
Sse9I AATT 3 cut(s) 82, 261, 345
SsiI CCGC 2 cut(s) 412, 466
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 434
TasI AATT 3 cut(s) 82, 261, 345
TscAI CASTG 1 cut(s) 273
TspDTI ATGAA 4 cut(s) 75, 174, 209, 366
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 38
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.