AT4G02890

Ubiquitin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015784
Physical Location & Seq
Reverse (-)
1278530 .. 1280166
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02890.3

Sequence Viewer

Length: 690 bp
ATGCAGATCTTTGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAGAGTTCTGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAGCAGAGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTGCTGACTACAACATCCAGAAGGAGTCCACACTTCATCTTGTTCTCAGGCTCCGTGGTGGTATGCAGATCTTTGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCTGACACTATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCAGCAGAGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACACTTCACTTGGTGTTGCGTCTCCGTGGAGGTATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACCATTACTCTTGAAGTTGAGAGCTCCGACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAAACAGCTTGAGGATGGTCGTACTTTGGCCGACTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGCTAAGGCTCCGTGGTGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

229

Amino Acids

25.69

Weight (kDa)

6.86

Isoelectric Point (pI)

29.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 71 5.8e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 74 7.4e-32 Ubiquitin family
Rad60-SLD PF11976 77 - 147 5.8e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 79 - 150 7.4e-32 Ubiquitin family
Rad60-SLD PF11976 153 - 223 5.8e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 155 - 226 7.4e-32 Ubiquitin family
Rad60-SLD PF11976 229 - 299 5.8e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 231 - 302 7.4e-32 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 44
AccI GTMKAC 2 cut(s) 422, 650
AccIII TCCGGA 2 cut(s) 112, 568
AclWI GGATC 3 cut(s) 82, 310, 538
AcoI YGGCCR 1 cut(s) 624
AdeI CACNNNGTG 2 cut(s) 436, 664
AfaI GTAC 1 cut(s) 619
AfiI CCNNNNNNNGG 4 cut(s) 49, 97, 553, 661
AgsI TTSAA 2 cut(s) 380, 503
AjnI CCWGG 2 cut(s) 318, 546
AluBI AGCT 3 cut(s) 285, 513, 604
AluI AGCT 3 cut(s) 285, 513, 604
Alw21I GWGCWC 2 cut(s) 287, 515
Alw26I GTCTC 2 cut(s) 449, 587
AlwI GGATC 3 cut(s) 82, 310, 538
Ama87I CYCGRG 1 cut(s) 44
Aor13HI TCCGGA 2 cut(s) 112, 568
AoxI GGCC 2 cut(s) 81, 624
ApeKI GCWGC 1 cut(s) 577
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AspS9I GGNCC 3 cut(s) 115, 343, 571
AsuHPI GGTGA 2 cut(s) 16, 31
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 3 cut(s) 115, 343, 571
BanII GRGCYC 2 cut(s) 287, 515
BbsI GAAGAC 1 cut(s) 479
Bbv12I GWGCWC 2 cut(s) 287, 515
BbvI GCAGC 1 cut(s) 589
BccI CCATC 4 cut(s) 74, 149, 377, 605
BciT130I CCWGG 2 cut(s) 320, 548
BciVI GTATCC 2 cut(s) 344, 572
BcoDI GTCTC 2 cut(s) 449, 587
BfuI GTATCC 2 cut(s) 344, 572
BglII AGATCT 2 cut(s) 6, 234
BisI GCNGC 1 cut(s) 578
BlsI GCNGC 1 cut(s) 579
Bme1390I CCNGG 2 cut(s) 320, 548
Bme18I GGWCC 3 cut(s) 115, 343, 571
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 115, 343, 571
BmiI GGNNCC 2 cut(s) 218, 674
BmrFI CCNGG 2 cut(s) 320, 548
BpiI GAAGAC 1 cut(s) 479
Bpu10I CCTNAGC 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 626
BsaJI CCNNGG 3 cut(s) 220, 448, 676
BsaWI WCCGGW 4 cut(s) 26, 112, 340, 568
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 97, 553, 661
Bse1I ACTGG 2 cut(s) 259, 487
BseAI TCCGGA 2 cut(s) 112, 568
BseBI CCWGG 2 cut(s) 320, 548
BseDI CCNNGG 3 cut(s) 220, 448, 676
BseGI GGATG 4 cut(s) 160, 180, 616, 636
BseLI CCNNNNNNNGG 4 cut(s) 49, 97, 553, 661
BseMII CTCAG 1 cut(s) 226
BseNI ACTGG 2 cut(s) 259, 487
BseXI GCAGC 1 cut(s) 589
BshFI GGCC 2 cut(s) 83, 626
BsiHKAI GWGCWC 2 cut(s) 287, 515
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 5 cut(s) 27, 113, 341, 366, 569
BslI CCNNNNNNNGG 4 cut(s) 49, 97, 553, 661
BsmAI GTCTC 2 cut(s) 449, 587
BsmBI CGTCTC 2 cut(s) 449, 587
BsnI GGCC 2 cut(s) 83, 626
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 287, 515
Bsp13I TCCGGA 2 cut(s) 112, 568
Bsp143I GATC 7 cut(s) 6, 87, 129, 234, 315, 357, 543
BspANI GGCC 2 cut(s) 83, 626
BspCNI CTCAG 1 cut(s) 225
BspEI TCCGGA 2 cut(s) 112, 568
BspLI GGNNCC 2 cut(s) 218, 674
BspPI GGATC 3 cut(s) 82, 310, 538
BsrI ACTGG 2 cut(s) 259, 487
BssECI CCNNGG 3 cut(s) 220, 448, 676
BssMI GATC 7 cut(s) 6, 87, 129, 234, 315, 357, 543
Bst2UI CCWGG 2 cut(s) 320, 548
BstDEI CTNAG 3 cut(s) 212, 540, 668
BstDSI CCRYGG 3 cut(s) 220, 448, 676
BstF5I GGATG 4 cut(s) 160, 180, 616, 636
BstKTI GATC 7 cut(s) 9, 90, 132, 237, 318, 360, 546
BstMAI GTCTC 2 cut(s) 449, 587
BstMBI GATC 7 cut(s) 6, 87, 129, 234, 315, 357, 543
BstNI CCWGG 2 cut(s) 320, 548
BstSCI CCNGG 2 cut(s) 318, 546
BstV1I GCAGC 1 cut(s) 589
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 5 cut(s) 6, 87, 234, 315, 543
BstYI RGATCY 5 cut(s) 6, 87, 234, 315, 543
BsuI GTATCC 2 cut(s) 344, 572
BsuRI GGCC 2 cut(s) 83, 626
BtgI CCRYGG 3 cut(s) 220, 448, 676
BtsCI GGATG 4 cut(s) 160, 180, 616, 636
BtsIMutI CAGTG 1 cut(s) 480
Cfr13I GGNCC 3 cut(s) 115, 343, 571
CseI GACGC 2 cut(s) 431, 569
Csp6I GTAC 1 cut(s) 618
CviQI GTAC 1 cut(s) 618
DdeI CTNAG 3 cut(s) 212, 540, 668
DpnI GATC 7 cut(s) 8, 89, 131, 236, 317, 359, 545
DpnII GATC 7 cut(s) 6, 87, 129, 234, 315, 357, 543
DraIII CACNNNGTG 2 cut(s) 436, 664
EaeI YGGCCR 1 cut(s) 624
Ecl136II GAGCTC 2 cut(s) 285, 513
Eco24I GRGCYC 2 cut(s) 287, 515
Eco47I GGWCC 3 cut(s) 115, 343, 571
Eco53kI GAGCTC 2 cut(s) 285, 513
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 2 cut(s) 285, 513
EcoRII CCWGG 2 cut(s) 318, 546
EcoT38I GRGCYC 2 cut(s) 287, 515
Esp3I CGTCTC 2 cut(s) 449, 587
FaiI YATR 2 cut(s) 230, 458
FblI GTMKAC 2 cut(s) 422, 650
Fnu4HI GCNGC 1 cut(s) 578
FokI GGATG 4 cut(s) 167, 167, 623, 623
FriOI GRGCYC 2 cut(s) 287, 515
Fsp4HI GCNGC 1 cut(s) 578
GluI GCNGC 1 cut(s) 578
HaeIII GGCC 2 cut(s) 83, 626
HapII CCGG 5 cut(s) 27, 113, 341, 366, 569
HgaI GACGC 2 cut(s) 431, 569
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 5 cut(s) 19, 191, 419, 475, 647
HpaII CCGG 5 cut(s) 27, 113, 341, 366, 569
HphI GGTGA 2 cut(s) 16, 31
Hpy166II GTNNAC 4 cut(s) 195, 252, 423, 651
Hpy188I TCNGA 4 cut(s) 61, 289, 414, 517
Hpy188III TCNNGA 7 cut(s) 113, 184, 244, 469, 500, 569, 640
Hpy8I GTNNAC 4 cut(s) 195, 252, 423, 651
HpyAV CCTTC 6 cut(s) 181, 409, 529, 551, 637, 665
HpyCH4IV ACGT 3 cut(s) 75, 248, 531
HpyCH4V TGCA 3 cut(s) 4, 232, 460
HpyF3I CTNAG 3 cut(s) 212, 540, 668
HpySE526I ACGT 3 cut(s) 75, 248, 531
Kpn2I TCCGGA 2 cut(s) 112, 568
Kzo9I GATC 7 cut(s) 6, 87, 129, 234, 315, 357, 543
LmnI GCTCC 3 cut(s) 222, 518, 678
Lsp1109I GCAGC 1 cut(s) 589
MaeII ACGT 3 cut(s) 75, 248, 531
MalI GATC 7 cut(s) 8, 89, 131, 236, 317, 359, 545
MboI GATC 7 cut(s) 6, 87, 129, 234, 315, 357, 543
MboII GAAGA 5 cut(s) 124, 352, 392, 484, 580
MflI RGATCY 5 cut(s) 6, 87, 234, 315, 543
MhlI GDGCHC 2 cut(s) 287, 515
MlyI GAGTC 5 cut(s) 13, 200, 428, 469, 656
MmeI TCCRAC 2 cut(s) 129, 540
MroI TCCGGA 2 cut(s) 112, 568
MseI TTAA 1 cut(s) 15
MspI CCGG 5 cut(s) 27, 113, 341, 366, 569
MspR9I CCNGG 2 cut(s) 320, 548
MvaI CCWGG 2 cut(s) 320, 548
NdeII GATC 7 cut(s) 6, 87, 129, 234, 315, 357, 543
NlaIV GGNNCC 2 cut(s) 218, 674
PaeR7I CTCGAG 1 cut(s) 44
PflFI GACNNNGTC 2 cut(s) 74, 302
PfoI TCCNGGA 2 cut(s) 318, 546
PkrI GCNGC 1 cut(s) 579
PleI GAGTC 5 cut(s) 13, 199, 427, 469, 655
PpsI GAGTC 5 cut(s) 13, 199, 427, 469, 655
Psp124BI GAGCTC 2 cut(s) 287, 515
Psp6I CCWGG 2 cut(s) 318, 546
PspGI CCWGG 2 cut(s) 318, 546
PspN4I GGNNCC 2 cut(s) 218, 674
PspPI GGNCC 3 cut(s) 115, 343, 571
PspXI VCTCGAGB 1 cut(s) 44
PsuI RGATCY 5 cut(s) 6, 87, 234, 315, 543
PsyI GACNNNGTC 2 cut(s) 74, 302
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
SacI GAGCTC 2 cut(s) 287, 515
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 578
Sau3AI GATC 7 cut(s) 6, 87, 129, 234, 315, 357, 543
Sau96I GGNCC 3 cut(s) 115, 343, 571
SchI GAGTC 5 cut(s) 13, 200, 428, 469, 656
ScrFI CCNGG 2 cut(s) 320, 548
SduI GDGCHC 2 cut(s) 287, 515
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 3 cut(s) 115, 343, 571
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 44, 605
SmoI CTYRAG 2 cut(s) 44, 605
SstI GAGCTC 2 cut(s) 287, 515
StyD4I CCNGG 2 cut(s) 318, 546
TaiI ACGT 3 cut(s) 78, 251, 534
TaqI TCGA 3 cut(s) 45, 69, 297
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 487
TseI GCWGC 1 cut(s) 577
TspDTI ATGAA 1 cut(s) 191
TspGWI ACGGA 3 cut(s) 209, 437, 665
TspRI CASTG 1 cut(s) 487
Tth111I GACNNNGTC 2 cut(s) 74, 302
VpaK11BI GGWCC 3 cut(s) 115, 343, 571
XhoI CTCGAG 1 cut(s) 44
XmiI GTMKAC 2 cut(s) 422, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.