Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G02890 AT4G02890 AT4G05320 AT4G05320 |
| fragaria_vesca | FvH4_2g20281 FvH4_3g21751 FvH4_3g21853 FvH4_3g21853 |
| prunus_persica | Prupe.4G025900_v2.0.a1 Prupe.4G025900_v2.0.a1 Prupe.4G025900_v2.0.a1 Prupe.4G025900_v2.0.a1 Prupe.4G025900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0037741 |
| rosa_laevigata | RLG00000033806 |
| rosa_roxburghii | Rroxscaffold_1G00043160 |
| rosa_samantha | Rh5AG256200 Rh5BG258400 |
| rosa_wichuraiana | Rw5G023750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 272 |
| AccI | GTMKAC | 2 cut(s) | 1106, 1334 |
| AccII | CGCG | 1 cut(s) | 678 |
| AciI | CCGC | 2 cut(s) | 676, 678 |
| AclI | AACGTT | 1 cut(s) | 531 |
| AclWI | GGATC | 4 cut(s) | 82, 766, 994, 1222 |
| AcoI | YGGCCR | 6 cut(s) | 157, 385, 613, 841, 1069, 1308 |
| AcsI | RAATTY | 1 cut(s) | 315 |
| AdeI | CACNNNGTG | 2 cut(s) | 436, 1120 |
| AfaI | GTAC | 5 cut(s) | 163, 391, 619, 847, 1075 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 49, 97, 205, 781, 1009, 1078, 1237 |
| AgsI | TTSAA | 2 cut(s) | 320, 548 |
| AjnI | CCWGG | 5 cut(s) | 90, 498, 774, 1002, 1230 |
| Alw21I | GWGCWC | 5 cut(s) | 213, 441, 743, 971, 1199 |
| Alw26I | GTCTC | 4 cut(s) | 131, 677, 905, 1361 |
| AlwI | GGATC | 4 cut(s) | 82, 766, 994, 1222 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 355, 583 |
| Ama87I | CYCGRG | 2 cut(s) | 272, 605 |
| AoxI | GGCC | 8 cut(s) | 157, 309, 385, 613, 841, 1069, 1221, 1308 |
| ApeKI | GCWGC | 7 cut(s) | 121, 145, 373, 601, 829, 1057, 1123 |
| ApoI | RAATTY | 1 cut(s) | 315 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 937, 969 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1245 |
| AspS9I | GGNCC | 1 cut(s) | 571 |
| AsuHPI | GGTGA | 7 cut(s) | 31, 244, 259, 472, 487, 1106, 1334 |
| AvaI | CYCGRG | 2 cut(s) | 272, 605 |
| AvaII | GGWCC | 1 cut(s) | 571 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 145, 178 |
| BanII | GRGCYC | 3 cut(s) | 743, 971, 1199 |
| BbsI | GAAGAC | 3 cut(s) | 707, 935, 1163 |
| Bbv12I | GWGCWC | 5 cut(s) | 213, 441, 743, 971, 1199 |
| BbvI | GCAGC | 7 cut(s) | 133, 157, 385, 613, 841, 1069, 1110 |
| BceAI | ACGGC | 7 cut(s) | 144, 172, 372, 600, 828, 1056, 1084 |
| BciT130I | CCWGG | 5 cut(s) | 92, 500, 776, 1004, 1232 |
| BciVI | GTATCC | 2 cut(s) | 344, 800 |
| BcoDI | GTCTC | 4 cut(s) | 131, 677, 905, 1361 |
| BfaI | CTAG | 2 cut(s) | 149, 1372 |
| BfuI | GTATCC | 2 cut(s) | 344, 800 |
| BglII | AGATCT | 4 cut(s) | 234, 462, 918, 1146 |
| BisI | GCNGC | 7 cut(s) | 122, 146, 374, 602, 830, 1058, 1124 |
| BlsI | GCNGC | 7 cut(s) | 123, 147, 375, 603, 831, 1059, 1125 |
| Bme1390I | CCNGG | 5 cut(s) | 92, 500, 776, 1004, 1232 |
| Bme18I | GGWCC | 1 cut(s) | 571 |
| BmeT110I | CYCGRG | 2 cut(s) | 272, 605 |
| BmgT120I | GGNCC | 1 cut(s) | 571 |
| BmrFI | CCNGG | 5 cut(s) | 92, 500, 776, 1004, 1232 |
| BmsI | GCATC | 2 cut(s) | 114, 570 |
| BpiI | GAAGAC | 3 cut(s) | 707, 935, 1163 |
| BpmI | CTGGAG | 6 cut(s) | 96, 398, 521, 749, 854, 1082 |
| BpuEI | CTTGAG | 1 cut(s) | 65 |
| BsaJI | CCNNGG | 4 cut(s) | 498, 676, 904, 1360 |
| BsaWI | WCCGGW | 2 cut(s) | 568, 938 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 49, 97, 205, 781, 1009, 1078, 1237 |
| Bse118I | RCCGGY | 4 cut(s) | 26, 254, 365, 482 |
| Bse1I | ACTGG | 1 cut(s) | 1171 |
| BseBI | CCWGG | 5 cut(s) | 92, 500, 776, 1004, 1232 |
| BseDI | CCNNGG | 4 cut(s) | 498, 676, 904, 1360 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 49, 97, 205, 781, 1009, 1078, 1237 |
| BseMII | CTCAG | 1 cut(s) | 1121 |
| BseNI | ACTGG | 1 cut(s) | 1171 |
| BseX3I | CGGCCG | 2 cut(s) | 157, 1069 |
| BseXI | GCAGC | 7 cut(s) | 133, 157, 385, 613, 841, 1069, 1110 |
| Bsh1236I | CGCG | 1 cut(s) | 678 |
| Bsh1285I | CGRYCG | 2 cut(s) | 160, 1072 |
| BshFI | GGCC | 8 cut(s) | 159, 311, 387, 615, 843, 1071, 1223, 1310 |
| BsiEI | CGRYCG | 2 cut(s) | 160, 1072 |
| BsiHKAI | GWGCWC | 5 cut(s) | 213, 441, 743, 971, 1199 |
| BsiHKCI | CYCGRG | 2 cut(s) | 272, 605 |
| BsiSI | CCGG | 8 cut(s) | 27, 138, 255, 366, 483, 569, 594, 939 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 49, 97, 205, 781, 1009, 1078, 1237 |
| BsmAI | GTCTC | 4 cut(s) | 131, 677, 905, 1361 |
| BsmBI | CGTCTC | 4 cut(s) | 131, 677, 905, 1361 |
| BsnI | GGCC | 8 cut(s) | 159, 311, 387, 615, 843, 1071, 1223, 1310 |
| BsoBI | CYCGRG | 2 cut(s) | 272, 605 |
| Bsp1286I | GDGCHC | 5 cut(s) | 213, 441, 743, 971, 1199 |
| BspACI | CCGC | 2 cut(s) | 676, 678 |
| BspANI | GGCC | 8 cut(s) | 159, 311, 387, 615, 843, 1071, 1223, 1310 |
| BspCNI | CTCAG | 1 cut(s) | 1122 |
| BspFNI | CGCG | 1 cut(s) | 678 |
| BspPI | GGATC | 4 cut(s) | 82, 766, 994, 1222 |
| BsrFI | RCCGGY | 4 cut(s) | 26, 254, 365, 482 |
| BsrI | ACTGG | 1 cut(s) | 1171 |
| BssAI | RCCGGY | 4 cut(s) | 26, 254, 365, 482 |
| BssECI | CCNNGG | 4 cut(s) | 498, 676, 904, 1360 |
| Bst2UI | CCWGG | 5 cut(s) | 92, 500, 776, 1004, 1232 |
| BstC8I | GCNNGC | 2 cut(s) | 367, 371 |
| BstDEI | CTNAG | 3 cut(s) | 84, 540, 1130 |
| BstDSI | CCRYGG | 3 cut(s) | 676, 904, 1360 |
| BstFNI | CGCG | 1 cut(s) | 678 |
| BstMAI | GTCTC | 4 cut(s) | 131, 677, 905, 1361 |
| BstMCI | CGRYCG | 2 cut(s) | 160, 1072 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 217, 445 |
| BstNI | CCWGG | 5 cut(s) | 92, 500, 776, 1004, 1232 |
| BstSCI | CCNGG | 5 cut(s) | 90, 498, 774, 1002, 1230 |
| BstUI | CGCG | 1 cut(s) | 678 |
| BstV1I | GCAGC | 7 cut(s) | 133, 157, 385, 613, 841, 1069, 1110 |
| BstV2I | GAAGAC | 3 cut(s) | 707, 935, 1163 |
| BstX2I | RGATCY | 8 cut(s) | 87, 234, 462, 771, 918, 999, 1146, 1227 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 499, 727, 1183 |
| BstYI | RGATCY | 8 cut(s) | 87, 234, 462, 771, 918, 999, 1146, 1227 |
| BstZI | CGGCCG | 2 cut(s) | 157, 1069 |
| BsuI | GTATCC | 2 cut(s) | 344, 800 |
| BsuRI | GGCC | 8 cut(s) | 159, 311, 387, 615, 843, 1071, 1223, 1310 |
| BtgI | CCRYGG | 3 cut(s) | 676, 904, 1360 |
| Cac8I | GCNNGC | 2 cut(s) | 367, 371 |
| CaiI | CAGNNNCTG | 2 cut(s) | 355, 583 |
| Cfr10I | RCCGGY | 4 cut(s) | 26, 254, 365, 482 |
| Cfr13I | GGNCC | 1 cut(s) | 571 |
| Cfr42I | CCGCGG | 1 cut(s) | 679 |
| CseI | GACGC | 2 cut(s) | 113, 1115 |
| Csp6I | GTAC | 5 cut(s) | 162, 390, 618, 846, 1074 |
| CviQI | GTAC | 5 cut(s) | 162, 390, 618, 846, 1074 |
| DdeI | CTNAG | 3 cut(s) | 84, 540, 1130 |
| DraIII | CACNNNGTG | 2 cut(s) | 436, 1120 |
| EaeI | YGGCCR | 6 cut(s) | 157, 385, 613, 841, 1069, 1308 |
| EagI | CGGCCG | 2 cut(s) | 157, 1069 |
| Ecl136II | GAGCTC | 3 cut(s) | 741, 969, 1197 |
| EclXI | CGGCCG | 2 cut(s) | 157, 1069 |
| Eco24I | GRGCYC | 3 cut(s) | 743, 971, 1199 |
| Eco47I | GGWCC | 1 cut(s) | 571 |
| Eco52I | CGGCCG | 2 cut(s) | 157, 1069 |
| Eco53kI | GAGCTC | 3 cut(s) | 741, 969, 1197 |
| Eco88I | CYCGRG | 2 cut(s) | 272, 605 |
| EcoICRI | GAGCTC | 3 cut(s) | 741, 969, 1197 |
| EcoRII | CCWGG | 5 cut(s) | 90, 498, 774, 1002, 1230 |
| EcoT38I | GRGCYC | 3 cut(s) | 743, 971, 1199 |
| Esp3I | CGTCTC | 4 cut(s) | 131, 677, 905, 1361 |
| FaiI | YATR | 7 cut(s) | 230, 405, 458, 686, 914, 1142, 1317 |
| FblI | GTMKAC | 2 cut(s) | 1106, 1334 |
| Fnu4HI | GCNGC | 7 cut(s) | 122, 146, 374, 602, 830, 1058, 1124 |
| FriOI | GRGCYC | 3 cut(s) | 743, 971, 1199 |
| Fsp4HI | GCNGC | 7 cut(s) | 122, 146, 374, 602, 830, 1058, 1124 |
| FspBI | CTAG | 2 cut(s) | 149, 1372 |
| GluI | GCNGC | 7 cut(s) | 122, 146, 374, 602, 830, 1058, 1124 |
| GsuI | CTGGAG | 6 cut(s) | 96, 398, 521, 749, 854, 1082 |
| HaeIII | GGCC | 8 cut(s) | 159, 311, 387, 615, 843, 1071, 1223, 1310 |
| HapII | CCGG | 8 cut(s) | 27, 138, 255, 366, 483, 569, 594, 939 |
| HgaI | GACGC | 2 cut(s) | 113, 1115 |
| HincII | GTYRAC | 2 cut(s) | 195, 423 |
| HindII | GTYRAC | 2 cut(s) | 195, 423 |
| HpaII | CCGG | 8 cut(s) | 27, 138, 255, 366, 483, 569, 594, 939 |
| HphI | GGTGA | 7 cut(s) | 31, 244, 259, 472, 487, 1106, 1334 |
| Hpy166II | GTNNAC | 6 cut(s) | 195, 423, 651, 879, 1107, 1335 |
| Hpy188I | TCNGA | 8 cut(s) | 61, 289, 517, 745, 973, 1098, 1131, 1201 |
| Hpy8I | GTNNAC | 6 cut(s) | 195, 423, 651, 879, 1107, 1335 |
| HpyCH4IV | ACGT | 4 cut(s) | 75, 303, 531, 1181 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 232, 460, 688, 821, 916, 1049, 1144 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 217, 445 |
| HpyF3I | CTNAG | 3 cut(s) | 84, 540, 1130 |
| HpySE526I | ACGT | 4 cut(s) | 75, 303, 531, 1181 |
| KroI | GCCGGC | 1 cut(s) | 365 |
| KroNI | GCCGGC | 1 cut(s) | 367 |
| KspI | CCGCGG | 1 cut(s) | 679 |
| LmnI | GCTCC | 5 cut(s) | 216, 290, 432, 444, 518 |
| Lsp1109I | GCAGC | 7 cut(s) | 133, 157, 385, 613, 841, 1069, 1110 |
| LweI | GCATC | 2 cut(s) | 114, 570 |
| MaeI | CTAG | 2 cut(s) | 149, 1372 |
| MaeII | ACGT | 4 cut(s) | 75, 303, 531, 1181 |
| MflI | RGATCY | 8 cut(s) | 87, 234, 462, 771, 918, 999, 1146, 1227 |
| MhlI | GDGCHC | 5 cut(s) | 213, 441, 743, 971, 1199 |
| MluCI | AATT | 1 cut(s) | 315 |
| MlyI | GAGTC | 8 cut(s) | 62, 200, 428, 656, 884, 1112, 1297, 1340 |
| MmeI | TCCRAC | 3 cut(s) | 312, 1164, 1269 |
| MroNI | GCCGGC | 1 cut(s) | 365 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1245 |
| MseI | TTAA | 2 cut(s) | 534, 1218 |
| MspA1I | CMGCKG | 4 cut(s) | 376, 678, 832, 1060 |
| MspI | CCGG | 8 cut(s) | 27, 138, 255, 366, 483, 569, 594, 939 |
| MspR9I | CCNGG | 5 cut(s) | 92, 500, 776, 1004, 1232 |
| MvaI | CCWGG | 5 cut(s) | 92, 500, 776, 1004, 1232 |
| MvnI | CGCG | 1 cut(s) | 678 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 217, 445 |
| NaeI | GCCGGC | 1 cut(s) | 367 |
| NgoMIV | GCCGGC | 1 cut(s) | 365 |
| PaeR7I | CTCGAG | 2 cut(s) | 272, 605 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 285, 513 |
| PdiI | GCCGGC | 1 cut(s) | 367 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1245 |
| PfeI | GAWTC | 2 cut(s) | 544, 1017 |
| PflFI | GACNNNGTC | 3 cut(s) | 74, 302, 758 |
| PfoI | TCCNGGA | 4 cut(s) | 90, 774, 1002, 1230 |
| PkrI | GCNGC | 7 cut(s) | 123, 147, 375, 603, 831, 1059, 1125 |
| PleI | GAGTC | 8 cut(s) | 61, 199, 427, 655, 883, 1111, 1297, 1339 |
| PpsI | GAGTC | 8 cut(s) | 61, 199, 427, 655, 883, 1111, 1297, 1339 |
| Psp124BI | GAGCTC | 3 cut(s) | 743, 971, 1199 |
| Psp1406I | AACGTT | 1 cut(s) | 531 |
| Psp6I | CCWGG | 5 cut(s) | 90, 498, 774, 1002, 1230 |
| PspGI | CCWGG | 5 cut(s) | 90, 498, 774, 1002, 1230 |
| PspPI | GGNCC | 1 cut(s) | 571 |
| PspXI | VCTCGAGB | 2 cut(s) | 272, 605 |
| PstNI | CAGNNNCTG | 2 cut(s) | 355, 583 |
| PsuI | RGATCY | 8 cut(s) | 87, 234, 462, 771, 918, 999, 1146, 1227 |
| PsyI | GACNNNGTC | 3 cut(s) | 74, 302, 758 |
| PvuII | CAGCTG | 3 cut(s) | 376, 832, 1060 |
| RsaI | GTAC | 5 cut(s) | 163, 391, 619, 847, 1075 |
| RsaNI | GTAC | 5 cut(s) | 162, 390, 618, 846, 1074 |
| SacI | GAGCTC | 3 cut(s) | 743, 971, 1199 |
| SacII | CCGCGG | 1 cut(s) | 679 |
| SaqAI | TTAA | 2 cut(s) | 534, 1218 |
| SatI | GCNGC | 7 cut(s) | 122, 146, 374, 602, 830, 1058, 1124 |
| Sau96I | GGNCC | 1 cut(s) | 571 |
| SchI | GAGTC | 8 cut(s) | 62, 200, 428, 656, 884, 1112, 1297, 1340 |
| ScrFI | CCNGG | 5 cut(s) | 92, 500, 776, 1004, 1232 |
| SduI | GDGCHC | 5 cut(s) | 213, 441, 743, 971, 1199 |
| SfaNI | GCATC | 2 cut(s) | 114, 570 |
| Sfr274I | CTCGAG | 2 cut(s) | 272, 605 |
| Sfr303I | CCGCGG | 1 cut(s) | 679 |
| SgrBI | CCGCGG | 1 cut(s) | 679 |
| SinI | GGWCC | 1 cut(s) | 571 |
| SlaI | CTCGAG | 2 cut(s) | 272, 605 |
| SmlI | CTYRAG | 3 cut(s) | 44, 272, 605 |
| SmoI | CTYRAG | 3 cut(s) | 44, 272, 605 |
| Sse9I | AATT | 1 cut(s) | 315 |
| SsiI | CCGC | 2 cut(s) | 676, 678 |
| SspI | AATATT | 1 cut(s) | 1093 |
| SspMI | CTAG | 2 cut(s) | 149, 1372 |
| SstI | GAGCTC | 3 cut(s) | 743, 971, 1199 |
| StyD4I | CCNGG | 5 cut(s) | 90, 498, 774, 1002, 1230 |
| TaiI | ACGT | 4 cut(s) | 78, 306, 534, 1184 |
| TaqI | TCGA | 8 cut(s) | 69, 273, 279, 507, 606, 735, 963, 1209 |
| TasI | AATT | 1 cut(s) | 315 |
| TfiI | GAWTC | 2 cut(s) | 544, 1017 |
| Tru1I | TTAA | 2 cut(s) | 534, 1218 |
| Tru9I | TTAA | 2 cut(s) | 534, 1218 |
| TseI | GCWGC | 7 cut(s) | 121, 145, 373, 601, 829, 1057, 1123 |
| TspGWI | ACGGA | 5 cut(s) | 203, 431, 893, 1343, 1349 |
| Tth111I | GACNNNGTC | 3 cut(s) | 74, 302, 758 |
| VpaK11BI | GGWCC | 1 cut(s) | 571 |
| XapI | RAATTY | 1 cut(s) | 315 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 658, 886 |
| XhoI | CTCGAG | 2 cut(s) | 272, 605 |
| XmiI | GTMKAC | 2 cut(s) | 1106, 1334 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1245 |
| XspI | CTAG | 2 cut(s) | 149, 1372 |