RLG00000033806

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011635
Physical Location & Seq
Reverse (-)
32436708 .. 32440267
3560 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033806

Sequence Viewer

Length: 1344 bp
ATGAAGGCGGAAGGCCCTCCCATACGACGCCTCTCATCGTTCAGAATTCAGATAGAAAGCAATTCGTCTCTCTTTCCGATAACCAAGATGCAGATCTTCGTCAAAACTCTCACTGGCAAGACCATAACCCTTGAGGTTGAAAGCTCTGACACCATAGATAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCCCCGGACCAGCAAAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTCGCTGACTACAATATTCAAAAGGAATCCACTCTTCACCTGGTGCTCAGACTCCGCGGTGGCATGCAAATCTTTGTTAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCTGACACCATTGACAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAGCAGAGACTTATCTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTGGCTGATTACAATATTCAAAAGGAGTCGACCCTTCATTTAGTGCTCCGTCTGCGTGGTGGCATGCAAATCTTTGTCAAAACCCTCACCGGAAAGACCATCACCTTGGAGGTTGAAAGTTCAGATACAATAGATAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATCTTTGCAGGGAAACAGTTAGAGGATGGTCGCACTCTTGCGGATTACAACATCCAGAAAGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGGCATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTCTGGAAGTGGAAAGCTCTGACACAATTGATAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCCCCAGACCAGCAGAGATTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCCGACTATAATATTCAGAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGTGGCATGCAGATCTTTGTTAAAACTCTGACTGGGAAGACCATTACTTTGGAGGTAGAGAGTTCAGATACGATTGACAATGTAAAAACCAAAATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGAAAGCAGCTTGAGGATGGGAGGACCCTTGCTGACTATAACATCCAGAAGGAGTCCACTCTTCACCTTGTCCTCCGCCTCCGTGCTTCAATTAGGAAAGAGGACGGAGTTCCTGATTTAGCAACGCTAAAGGCTCTAAATTTCTTCTCTCCCAATCTTTTTCATTTCCGATTTCTATCTCCGACTGGATCTCCGAAAAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

448

Amino Acids

50.18

Weight (kDa)

8.99

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 30 - 100 1.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 32 - 103 1.4e-31 Ubiquitin family
Rad60-SLD PF11976 106 - 176 1.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 108 - 179 1.4e-31 Ubiquitin family
Rad60-SLD PF11976 182 - 252 1.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 184 - 255 1.4e-31 Ubiquitin family
Rad60-SLD PF11976 258 - 328 1.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 260 - 331 1.4e-31 Ubiquitin family
Rad60-SLD PF11976 334 - 404 1.1e-16 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 336 - 407 3.5e-31 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 899
AccI GTMKAC 1 cut(s) 509
AccII CGCG 1 cut(s) 309
AccIII TCCGGA 1 cut(s) 1111
AciI CCGC 6 cut(s) 8, 307, 309, 475, 713, 1213
AclWI GGATC 2 cut(s) 397, 1333
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 4 cut(s) 45, 858, 1086, 1276
AcyI GRCGYC 1 cut(s) 28
AdeI CACNNNGTG 3 cut(s) 295, 751, 979
AfiI CCNNNNNNNGG 2 cut(s) 184, 481
AgsI TTSAA 5 cut(s) 140, 272, 500, 596, 1227
AjnI CCWGG 2 cut(s) 291, 480
AluBI AGCT 6 cut(s) 144, 235, 828, 854, 919, 1147
AluI AGCT 6 cut(s) 144, 235, 828, 854, 919, 1147
Alw21I GWGCWC 2 cut(s) 300, 528
Alw26I GTCTC 3 cut(s) 72, 433, 764
AlwI GGATC 2 cut(s) 397, 1333
Ama87I CYCGRG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 1111
AoxI GGCC 2 cut(s) 13, 472
ApeKI GCWGC 3 cut(s) 232, 916, 1144
ApoI RAATTY 4 cut(s) 45, 858, 1086, 1276
ArsI GACNNNNNNTTYG 2 cut(s) 1024, 1056
AspS9I GGNCC 4 cut(s) 14, 202, 1114, 1161
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 5 cut(s) 281, 559, 574, 787, 1193
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 3 cut(s) 202, 1114, 1161
BbsI GAAGAC 1 cut(s) 1037
Bbv12I GWGCWC 2 cut(s) 300, 528
BbvI GCAGC 3 cut(s) 244, 928, 1156
BccI CCATC 7 cut(s) 236, 464, 587, 692, 815, 920, 1148
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 2 cut(s) 293, 482
BciVI GTATCC 1 cut(s) 431
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 3 cut(s) 72, 433, 764
BfuAI ACCTGC 1 cut(s) 899
BfuI GTATCC 1 cut(s) 431
BglII AGATCT 2 cut(s) 93, 1005
BisI GCNGC 4 cut(s) 233, 475, 917, 1145
BlsI GCNGC 4 cut(s) 234, 476, 918, 1146
Bme1390I CCNGG 3 cut(s) 200, 293, 482
Bme18I GGWCC 3 cut(s) 202, 1114, 1161
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 4 cut(s) 14, 202, 1114, 1161
BmiI GGNNCC 1 cut(s) 1163
BmrFI CCNGG 3 cut(s) 200, 293, 482
BmrI ACTGGG 2 cut(s) 351, 1035
BmsI GCATC 2 cut(s) 78, 201
BmuI ACTGGG 2 cut(s) 351, 1035
BpiI GAAGAC 1 cut(s) 1037
BpmI CTGGAG 1 cut(s) 639
BpuEI CTTGAG 4 cut(s) 152, 485, 941, 1169
BpuMI CCSGG 1 cut(s) 200
BsaBI GATNNNNATC 2 cut(s) 92, 1312
BsaHI GRCGYC 1 cut(s) 28
BsaJI CCNNGG 6 cut(s) 198, 307, 357, 480, 585, 763
BsaWI WCCGGW 2 cut(s) 569, 1111
BsaXI ACNNNNNCTCC 2 cut(s) 1312, 1342
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 481
Bse118I RCCGGY 1 cut(s) 797
Bse1I ACTGG 4 cut(s) 118, 346, 1030, 1327
Bse8I GATNNNNATC 2 cut(s) 92, 1312
BseAI TCCGGA 1 cut(s) 1111
BseBI CCWGG 2 cut(s) 293, 482
BseDI CCNNGG 6 cut(s) 198, 307, 357, 480, 585, 763
BseGI GGATG 8 cut(s) 192, 247, 475, 703, 723, 931, 1159, 1179
BseJI GATNNNNATC 2 cut(s) 92, 1312
BseLI CCNNNNNNNGG 2 cut(s) 184, 481
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 4 cut(s) 118, 346, 1030, 1327
BseXI GCAGC 3 cut(s) 244, 928, 1156
BsgI GTGCAG 1 cut(s) 956
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 2 cut(s) 15, 474
BsiHKAI GWGCWC 2 cut(s) 300, 528
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 4 cut(s) 200, 570, 798, 1112
BslI CCNNNNNNNGG 2 cut(s) 184, 481
BsmAI GTCTC 3 cut(s) 72, 433, 764
BsmBI CGTCTC 2 cut(s) 72, 764
BsmI GAATGC 2 cut(s) 648, 1104
BsnI GGCC 2 cut(s) 15, 474
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 300, 528
Bsp13I TCCGGA 1 cut(s) 1111
Bsp143I GATC 4 cut(s) 93, 402, 1005, 1325
BspACI CCGC 6 cut(s) 8, 307, 309, 475, 713, 1213
BspANI GGCC 2 cut(s) 15, 474
BspCNI CTCAG 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 1111
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 1163
BspMI ACCTGC 1 cut(s) 899
BspPI GGATC 2 cut(s) 397, 1333
BsrFI RCCGGY 1 cut(s) 797
BsrI ACTGG 4 cut(s) 118, 346, 1030, 1327
BssAI RCCGGY 1 cut(s) 797
BssECI CCNNGG 6 cut(s) 198, 307, 357, 480, 585, 763
BssMI GATC 4 cut(s) 93, 402, 1005, 1325
BssNI GRCGYC 1 cut(s) 28
BssT1I CCWWGG 2 cut(s) 357, 585
Bst2UI CCWGG 2 cut(s) 293, 482
Bst4CI ACNGT 1 cut(s) 690
Bst6I CTCTTC 3 cut(s) 291, 747, 1203
BstACI GRCGYC 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 979
BstC8I GCNNGC 6 cut(s) 226, 230, 317, 545, 773, 1001
BstDEI CTNAG 1 cut(s) 299
BstDSI CCRYGG 2 cut(s) 307, 763
BstF5I GGATG 8 cut(s) 192, 247, 475, 703, 723, 931, 1159, 1179
BstFNI CGCG 1 cut(s) 309
BstKTI GATC 4 cut(s) 96, 405, 1008, 1328
BstMAI GTCTC 3 cut(s) 72, 433, 764
BstMBI GATC 4 cut(s) 93, 402, 1005, 1325
BstMWI GCNNNNNNNGC 3 cut(s) 532, 979, 988
BstNI CCWGG 2 cut(s) 293, 482
BstNSI RCATGY 4 cut(s) 319, 547, 775, 1003
BstSCI CCNGG 3 cut(s) 198, 291, 480
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 244, 928, 1156
BstV2I GAAGAC 1 cut(s) 1037
BstX2I RGATCY 4 cut(s) 93, 402, 1005, 1325
BstXI CCANNNNNNTGG 4 cut(s) 358, 586, 814, 1042
BstYI RGATCY 4 cut(s) 93, 402, 1005, 1325
BsuI GTATCC 1 cut(s) 431
BsuRI GGCC 2 cut(s) 15, 474
BtgI CCRYGG 2 cut(s) 307, 763
BtsCI GGATG 8 cut(s) 192, 247, 475, 703, 723, 931, 1159, 1179
BtsIMutI CAGTG 2 cut(s) 111, 339
BveI ACCTGC 1 cut(s) 899
Cac8I GCNNGC 6 cut(s) 226, 230, 317, 545, 773, 1001
Cfr10I RCCGGY 1 cut(s) 797
Cfr13I GGNCC 4 cut(s) 14, 202, 1114, 1161
Cfr42I CCGCGG 1 cut(s) 310
CseI GACGC 3 cut(s) 36, 255, 746
CsiI ACCWGGT 1 cut(s) 291
CviAII CATG 4 cut(s) 316, 544, 772, 1000
DdeI CTNAG 1 cut(s) 299
DpnI GATC 4 cut(s) 95, 404, 1007, 1327
DpnII GATC 4 cut(s) 93, 402, 1005, 1325
DraIII CACNNNGTG 3 cut(s) 295, 751, 979
EaeI YGGCCR 1 cut(s) 472
Eam1104I CTCTTC 3 cut(s) 291, 747, 1203
EarI CTCTTC 3 cut(s) 291, 747, 1203
EciI GGCGGA 2 cut(s) 23, 1202
Eco130I CCWWGG 2 cut(s) 357, 585
Eco47I GGWCC 3 cut(s) 202, 1114, 1161
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 2 cut(s) 14, 1161
EcoRI GAATTC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 291, 480
EcoT14I CCWWGG 2 cut(s) 357, 585
ErhI CCWWGG 2 cut(s) 357, 585
Esp3I CGTCTC 2 cut(s) 72, 764
FaeI CATG 4 cut(s) 319, 547, 775, 1003
FatI CATG 4 cut(s) 315, 543, 771, 999
FblI GTMKAC 1 cut(s) 509
Fnu4HI GCNGC 4 cut(s) 233, 475, 917, 1145
FokI GGATG 8 cut(s) 179, 254, 482, 710, 710, 938, 1166, 1166
Fsp4HI GCNGC 4 cut(s) 233, 475, 917, 1145
GluI GCNGC 4 cut(s) 233, 475, 917, 1145
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 2 cut(s) 15, 474
HapII CCGG 4 cut(s) 200, 570, 798, 1112
HgaI GACGC 3 cut(s) 36, 255, 746
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 4 cut(s) 319, 547, 775, 1003
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 8 cut(s) 278, 303, 334, 506, 631, 734, 962, 1190
HpaII CCGG 4 cut(s) 200, 570, 798, 1112
HphI GGTGA 5 cut(s) 281, 559, 574, 787, 1193
Hpy166II GTNNAC 3 cut(s) 510, 966, 1194
Hpy8I GTNNAC 3 cut(s) 510, 966, 1194
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 7 cut(s) 5, 182, 388, 524, 924, 952, 1180
HpyCH4III ACNGT 1 cut(s) 690
HpyCH4V TGCA 8 cut(s) 91, 319, 547, 680, 775, 908, 973, 1003
HpyF10VI GCNNNNNNNGC 3 cut(s) 532, 979, 988
HpyF3I CTNAG 1 cut(s) 299
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 4 cut(s) 319, 547, 775, 1003
Kpn2I TCCGGA 1 cut(s) 1111
KspI CCGCGG 1 cut(s) 310
Kzo9I GATC 4 cut(s) 93, 402, 1005, 1325
LmnI GCTCC 1 cut(s) 531
Lsp1109I GCAGC 3 cut(s) 244, 928, 1156
LweI GCATC 2 cut(s) 78, 201
MabI ACCWGGT 1 cut(s) 291
MalI GATC 4 cut(s) 95, 404, 1007, 1327
MboI GATC 4 cut(s) 93, 402, 1005, 1325
MboII GAAGA 6 cut(s) 88, 278, 734, 1042, 1190, 1273
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 4 cut(s) 93, 402, 1005, 1325
MhlI GDGCHC 2 cut(s) 300, 528
MluCI AATT 7 cut(s) 45, 61, 837, 858, 1086, 1227, 1276
MlyI GAGTC 5 cut(s) 297, 328, 515, 971, 1199
MmeI TCCRAC 1 cut(s) 1343
MroI TCCGGA 1 cut(s) 1111
MseI TTAA 2 cut(s) 330, 1014
MspA1I CMGCKG 1 cut(s) 309
MspI CCGG 4 cut(s) 200, 570, 798, 1112
MspR9I CCNGG 3 cut(s) 200, 293, 482
MunI CAATTG 1 cut(s) 837
Mva1269I GAATGC 2 cut(s) 648, 1104
MvaI CCWGG 2 cut(s) 293, 482
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 3 cut(s) 532, 979, 988
NciI CCSGG 1 cut(s) 200
NdeII GATC 4 cut(s) 93, 402, 1005, 1325
NlaIII CATG 4 cut(s) 319, 547, 775, 1003
NlaIV GGNNCC 1 cut(s) 1163
NspI RCATGY 4 cut(s) 319, 547, 775, 1003
PaeI GCATGC 4 cut(s) 319, 547, 775, 1003
PaeR7I CTCGAG 1 cut(s) 236
PctI GAATGC 2 cut(s) 648, 1104
PfeI GAWTC 3 cut(s) 278, 631, 734
PkrI GCNGC 4 cut(s) 234, 476, 918, 1146
PleI GAGTC 5 cut(s) 297, 328, 514, 970, 1198
PpsI GAGTC 5 cut(s) 297, 328, 514, 970, 1198
PpuMI RGGWCCY 1 cut(s) 1161
Psp5II RGGWCCY 1 cut(s) 1161
Psp6I CCWGG 2 cut(s) 291, 480
PspGI CCWGG 2 cut(s) 291, 480
PspN4I GGNNCC 1 cut(s) 1163
PspPI GGNCC 4 cut(s) 14, 202, 1114, 1161
PspPPI RGGWCCY 1 cut(s) 1161
PspXI VCTCGAGB 1 cut(s) 236
PsuI RGATCY 4 cut(s) 93, 402, 1005, 1325
SacII CCGCGG 1 cut(s) 310
SalI GTCGAC 1 cut(s) 508
SaqAI TTAA 2 cut(s) 330, 1014
SatI GCNGC 4 cut(s) 233, 475, 917, 1145
Sau3AI GATC 4 cut(s) 93, 402, 1005, 1325
Sau96I GGNCC 4 cut(s) 14, 202, 1114, 1161
SchI GAGTC 5 cut(s) 297, 328, 515, 971, 1199
ScrFI CCNGG 3 cut(s) 200, 293, 482
SduI GDGCHC 2 cut(s) 300, 528
SexAI ACCWGGT 1 cut(s) 291
SfaNI GCATC 2 cut(s) 78, 201
Sfr274I CTCGAG 1 cut(s) 236
Sfr303I CCGCGG 1 cut(s) 310
SgrBI CCGCGG 1 cut(s) 310
SinI GGWCC 3 cut(s) 202, 1114, 1161
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 5 cut(s) 131, 236, 464, 920, 1148
SmoI CTYRAG 5 cut(s) 131, 236, 464, 920, 1148
SphI GCATGC 4 cut(s) 319, 547, 775, 1003
Sse9I AATT 7 cut(s) 45, 61, 837, 858, 1086, 1227, 1276
SsiI CCGC 6 cut(s) 8, 307, 309, 475, 713, 1213
SspI AATATT 3 cut(s) 268, 496, 952
StyD4I CCNGG 3 cut(s) 198, 291, 480
StyI CCWWGG 2 cut(s) 357, 585
TaaI ACNGT 1 cut(s) 690
TaqI TCGA 2 cut(s) 237, 509
TasI AATT 7 cut(s) 45, 61, 837, 858, 1086, 1227, 1276
TauI GCSGC 1 cut(s) 477
TfiI GAWTC 3 cut(s) 278, 631, 734
Tru1I TTAA 2 cut(s) 330, 1014
Tru9I TTAA 2 cut(s) 330, 1014
TscAI CASTG 2 cut(s) 118, 346
TseI GCWGC 3 cut(s) 232, 916, 1144
TspDTI ATGAA 3 cut(s) 17, 506, 1289
TspGWI ACGGA 4 cut(s) 518, 752, 1208, 1257
TspRI CASTG 2 cut(s) 118, 346
VpaK11BI GGWCC 3 cut(s) 202, 1114, 1161
XapI RAATTY 4 cut(s) 45, 858, 1086, 1276
XceI RCATGY 4 cut(s) 319, 547, 775, 1003
XcmI CCANNNNNNNNNTGG 2 cut(s) 289, 973
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.