Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015784

Physical Location & Seq

Genomic Coordinates Reverse (-)

2588004 .. 2589437

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G05050.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCTGACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATCAGCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGATGGCCGCACGTTGGCGGATTACAATATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCTCCGTGGTGGTATGCAGATTTTCGTTAAAACCCTAACGGGAAAGACGATTACTCTTGAGGTGGAGAGCTCTGACACCATTGACAACGTCAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAGGACGGCAGAACTTTGGCGGATTACAACATCCAGAAGGAGTCTACGCTTCATTTGGTCTTGCGTCTGCGTGGAGGTATGCAGATCTTCGTAAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTTGAGAGCTCCGACACCATTGATAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACTTTGGCCGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGTCTCCGTGGTGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

229

Amino Acids

25.69

Weight (kDa)

6.86

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.4e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.8e-32	Ubiquitin family
Rad60-SLD	PF11976	77 - 147	1.4e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	79 - 150	1.8e-32	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02890 AT4G02890 AT4G05050 AT4G05050 AT4G05050
fragaria_vesca	FvH4_3g21853 FvH4_6g15632
prunus_persica	Prupe.4G025900_v2.0.a1 Prupe.4G025900_v2.0.a1 Prupe.4G025900_v2.0.a1 Prupe.4G025900_v2.0.a1 Prupe.4G025900_v2.0.a1 Prupe.4G025900_v2.0.a1 Prupe.4G025900_v2.0.a1
rosa_roxburghii	Rroxscaffold_1G00043300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	44
AccI	GTMKAC	2 cut(s)	422, 650
AccIII	TCCGGA	3 cut(s)	112, 340, 568
AciI	CCGC	3 cut(s)	160, 170, 398
AclI	AACGTT	1 cut(s)	75
AclWI	GGATC	4 cut(s)	82, 123, 310, 538
AcoI	YGGCCR	2 cut(s)	157, 624
AfaI	GTAC	1 cut(s)	619
AfiI	CCNNNNNNNGG	6 cut(s)	49, 97, 166, 205, 325, 553
AgsI	TTSAA	1 cut(s)	503
AjnI	CCWGG	2 cut(s)	90, 546
AluBI	AGCT	4 cut(s)	57, 285, 513, 604
AluI	AGCT	4 cut(s)	57, 285, 513, 604
Alw21I	GWGCWC	2 cut(s)	287, 515
Alw26I	GTCTC	2 cut(s)	587, 677
AlwI	GGATC	4 cut(s)	82, 123, 310, 538
Ama87I	CYCGRG	1 cut(s)	44
Aor13HI	TCCGGA	3 cut(s)	112, 340, 568
AoxI	GGCC	4 cut(s)	81, 157, 309, 624
ApeKI	GCWGC	2 cut(s)	577, 601
Asp700I	GAANNNNTTC	2 cut(s)	105, 561
AspS9I	GGNCC	3 cut(s)	343, 571, 664
AsuHPI	GGTGA	2 cut(s)	16, 31
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	3 cut(s)	343, 571, 664
BanII	GRGCYC	2 cut(s)	287, 515
Bbv12I	GWGCWC	2 cut(s)	287, 515
BbvI	GCAGC	2 cut(s)	589, 613
BccI	CCATC	4 cut(s)	74, 149, 500, 605
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	2 cut(s)	92, 548
BcoDI	GTCTC	2 cut(s)	587, 677
BglII	AGATCT	2 cut(s)	6, 462
BisI	GCNGC	3 cut(s)	160, 578, 602
BlsI	GCNGC	3 cut(s)	161, 579, 603
Bme1390I	CCNGG	2 cut(s)	92, 548
Bme18I	GGWCC	3 cut(s)	343, 571, 664
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	343, 571, 664
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	92, 548
BpuEI	CTTGAG	3 cut(s)	293, 398, 626
BsaJI	CCNNGG	2 cut(s)	220, 676
BsaWI	WCCGGW	5 cut(s)	26, 112, 340, 482, 568
Bsc4I	CCNNNNNNNGG	6 cut(s)	49, 97, 166, 205, 325, 553
BseAI	TCCGGA	3 cut(s)	112, 340, 568
BseBI	CCWGG	2 cut(s)	92, 548
BseDI	CCNNGG	2 cut(s)	220, 676
BseGI	GGATG	4 cut(s)	160, 408, 616, 636
BseLI	CCNNNNNNNGG	6 cut(s)	49, 97, 166, 205, 325, 553
BseMII	CTCAG	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	589, 613
BshFI	GGCC	4 cut(s)	83, 159, 311, 626
BsiHKAI	GWGCWC	2 cut(s)	287, 515
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	7 cut(s)	27, 113, 138, 341, 366, 483, 569
BslI	CCNNNNNNNGG	6 cut(s)	49, 97, 166, 205, 325, 553
BsmAI	GTCTC	2 cut(s)	587, 677
BsmBI	CGTCTC	2 cut(s)	587, 677
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	4 cut(s)	83, 159, 311, 626
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	287, 515
Bsp13I	TCCGGA	3 cut(s)	112, 340, 568
Bsp143I	GATC	7 cut(s)	6, 87, 115, 315, 357, 462, 543
BspACI	CCGC	3 cut(s)	160, 170, 398
BspANI	GGCC	4 cut(s)	83, 159, 311, 626
BspCNI	CTCAG	1 cut(s)	225
BspEI	TCCGGA	3 cut(s)	112, 340, 568
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	4 cut(s)	82, 123, 310, 538
BssECI	CCNNGG	2 cut(s)	220, 676
BssMI	GATC	7 cut(s)	6, 87, 115, 315, 357, 462, 543
Bst2UI	CCWGG	2 cut(s)	92, 548
Bst6I	CTCTTC	1 cut(s)	660
BstDEI	CTNAG	2 cut(s)	212, 540
BstDSI	CCRYGG	2 cut(s)	220, 676
BstF5I	GGATG	4 cut(s)	160, 408, 616, 636
BstKTI	GATC	7 cut(s)	9, 90, 118, 318, 360, 465, 546
BstMAI	GTCTC	2 cut(s)	587, 677
BstMBI	GATC	7 cut(s)	6, 87, 115, 315, 357, 462, 543
BstNI	CCWGG	2 cut(s)	92, 548
BstSCI	CCNGG	2 cut(s)	90, 546
BstV1I	GCAGC	2 cut(s)	589, 613
BstX2I	RGATCY	5 cut(s)	6, 87, 315, 462, 543
BstYI	RGATCY	5 cut(s)	6, 87, 315, 462, 543
BsuRI	GGCC	4 cut(s)	83, 159, 311, 626
BtgI	CCRYGG	2 cut(s)	220, 676
BtsCI	GGATG	4 cut(s)	160, 408, 616, 636
Cfr13I	GGNCC	3 cut(s)	343, 571, 664
CseI	GACGC	2 cut(s)	431, 569
Csp6I	GTAC	1 cut(s)	618
CviQI	GTAC	1 cut(s)	618
DdeI	CTNAG	2 cut(s)	212, 540
DpnI	GATC	7 cut(s)	8, 89, 117, 317, 359, 464, 545
DpnII	GATC	7 cut(s)	6, 87, 115, 315, 357, 462, 543
EaeI	YGGCCR	2 cut(s)	157, 624
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
EciI	GGCGGA	2 cut(s)	185, 413
Ecl136II	GAGCTC	2 cut(s)	285, 513
Eco24I	GRGCYC	2 cut(s)	287, 515
Eco47I	GGWCC	3 cut(s)	343, 571, 664
Eco53kI	GAGCTC	2 cut(s)	285, 513
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	2 cut(s)	285, 513
EcoRII	CCWGG	2 cut(s)	90, 546
EcoT38I	GRGCYC	2 cut(s)	287, 515
Esp3I	CGTCTC	2 cut(s)	587, 677
FaiI	YATR	2 cut(s)	230, 458
FblI	GTMKAC	2 cut(s)	422, 650
Fnu4HI	GCNGC	3 cut(s)	160, 578, 602
FokI	GGATG	4 cut(s)	167, 395, 623, 623
FriOI	GRGCYC	2 cut(s)	287, 515
Fsp4HI	GCNGC	3 cut(s)	160, 578, 602
GluI	GCNGC	3 cut(s)	160, 578, 602
HaeIII	GGCC	4 cut(s)	83, 159, 311, 626
HapII	CCGG	7 cut(s)	27, 113, 138, 341, 366, 483, 569
HgaI	GACGC	2 cut(s)	431, 569
HinfI	GANTC	4 cut(s)	19, 191, 419, 647
HpaII	CCGG	7 cut(s)	27, 113, 138, 341, 366, 483, 569
HphI	GGTGA	2 cut(s)	16, 31
Hpy166II	GTNNAC	2 cut(s)	423, 651
Hpy188I	TCNGA	3 cut(s)	61, 289, 517
Hpy188III	TCNNGA	8 cut(s)	113, 184, 272, 341, 412, 500, 569, 640
Hpy8I	GTNNAC	2 cut(s)	423, 651
HpyAV	CCTTC	6 cut(s)	95, 181, 409, 529, 551, 637
HpyCH4IV	ACGT	5 cut(s)	75, 164, 303, 531, 616
HpyCH4V	TGCA	3 cut(s)	4, 232, 460
HpyF3I	CTNAG	2 cut(s)	212, 540
HpySE526I	ACGT	5 cut(s)	75, 164, 303, 531, 616
Kpn2I	TCCGGA	3 cut(s)	112, 340, 568
Kzo9I	GATC	7 cut(s)	6, 87, 115, 315, 357, 462, 543
LmnI	GCTCC	2 cut(s)	222, 518
Lsp1109I	GCAGC	2 cut(s)	589, 613
MaeII	ACGT	5 cut(s)	75, 164, 303, 531, 616
MalI	GATC	7 cut(s)	8, 89, 117, 317, 359, 464, 545
MboI	GATC	7 cut(s)	6, 87, 115, 315, 357, 462, 543
MboII	GAAGA	5 cut(s)	124, 352, 457, 580, 647
MflI	RGATCY	5 cut(s)	6, 87, 315, 462, 543
MhlI	GDGCHC	2 cut(s)	287, 515
MlyI	GAGTC	3 cut(s)	13, 428, 656
MmeI	TCCRAC	2 cut(s)	129, 540
MroI	TCCGGA	3 cut(s)	112, 340, 568
MroXI	GAANNNNTTC	2 cut(s)	105, 561
MseI	TTAA	3 cut(s)	15, 78, 243
MspI	CCGG	7 cut(s)	27, 113, 138, 341, 366, 483, 569
MspR9I	CCNGG	2 cut(s)	92, 548
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	92, 548
NdeII	GATC	7 cut(s)	6, 87, 115, 315, 357, 462, 543
NlaIV	GGNNCC	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PctI	GAATGC	1 cut(s)	561
PdmI	GAANNNNTTC	2 cut(s)	105, 561
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	302
PfoI	TCCNGGA	2 cut(s)	90, 546
PkrI	GCNGC	3 cut(s)	161, 579, 603
PleI	GAGTC	3 cut(s)	13, 427, 655
PpsI	GAGTC	3 cut(s)	13, 427, 655
Psp124BI	GAGCTC	2 cut(s)	287, 515
Psp1406I	AACGTT	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	90, 546
PspGI	CCWGG	2 cut(s)	90, 546
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	3 cut(s)	343, 571, 664
PspXI	VCTCGAGB	1 cut(s)	44
PsuI	RGATCY	5 cut(s)	6, 87, 315, 462, 543
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
SacI	GAGCTC	2 cut(s)	287, 515
SaqAI	TTAA	3 cut(s)	15, 78, 243
SatI	GCNGC	3 cut(s)	160, 578, 602
Sau3AI	GATC	7 cut(s)	6, 87, 115, 315, 357, 462, 543
Sau96I	GGNCC	3 cut(s)	343, 571, 664
SchI	GAGTC	3 cut(s)	13, 428, 656
ScrFI	CCNGG	2 cut(s)	92, 548
SduI	GDGCHC	2 cut(s)	287, 515
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	3 cut(s)	343, 571, 664
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	4 cut(s)	44, 272, 377, 605
SmoI	CTYRAG	4 cut(s)	44, 272, 377, 605
SsiI	CCGC	3 cut(s)	160, 170, 398
SstI	GAGCTC	2 cut(s)	287, 515
StyD4I	CCNGG	2 cut(s)	90, 546
TaiI	ACGT	5 cut(s)	78, 167, 306, 534, 619
TaqI	TCGA	2 cut(s)	45, 69
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	3 cut(s)	15, 78, 243
Tru9I	TTAA	3 cut(s)	15, 78, 243
TseI	GCWGC	2 cut(s)	577, 601
TspDTI	ATGAA	1 cut(s)	419
TspGWI	ACGGA	3 cut(s)	209, 659, 665
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	3 cut(s)	343, 571, 664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XhoI	CTCGAG	1 cut(s)	44
XmiI	GTMKAC	2 cut(s)	422, 650
XmnI	GAANNNNTTC	2 cut(s)	105, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.