AT4G05523

Nucleoporin GLE1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009553
Physical Location & Seq
Reverse (-)
2808054 .. 2809025
972 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G05523.1

Sequence Viewer

Length: 666 bp
ATGAGAATTGTTTCGGAACATGATTGTCCCAAAAGCGTCGAAGGGTTTAGCTATGACCCTGAACCTAACAGGAGTTTCGATCGCTTGGTCTCTGAGACCGAGTCTTTTGAAAAGAAGCTCAATGCTTTTACAAAGTTTCATCAACCATTCACTAAGACAACCTCAAGGACGGATATAGCATTCGTAATGCGTGTATCAGAAGATGATATGGATAGTGATGAAGATGTAGAGAATAATGATCAACAAGACAAAGAAGAAAGTCAAATCTGTACCTGTGATGATCTATACTTAAGCGATGATGATGAGTTTGATCATGAACTTGAGTATACGATAATGAATAAAATGGGGCCAGCCCTGGCTGAGAACGACCACCAAACCAAAAGCACGGAAGATATTCAAAATCAAGTATCAGTTGTTGAAAAGGAAATAAGGAATGAGATTGAAAGGGCACTCTCTGCAATAGCTCTGGTTGAGAAGTACCGCGAAAACCGTAGAGAAGTTGAACGGAGTCTTGATCTTCAATATAAGCGAGAAGTTTCTGAAGCACTTGAGACTCATATGAATGTAGTCAAACGTGAACATGCAATTATATCGAAGAACTATGAAGACGAGTTTCTTGTCGGCGGAGTTTACTGCAGAGTTAGTTCAGCATTACCAGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000822 GO:0003006 GO:0003341 GO:0003351 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006403 GO:0006405 GO:0006406 GO:0006417 GO:0006446 GO:0006449 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007389 GO:0007399 GO:0007422 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0008289 GO:0009791 GO:0009799 GO:0009855 GO:0009889 GO:0009987 GO:0010001 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0014009 GO:0014010 GO:0014037 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022008 GO:0022414 GO:0030154 GO:0030182 GO:0031323 GO:0031326 GO:0031369 GO:0031503 GO:0031967 GO:0031975 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0036094 GO:0042063 GO:0042886 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043244 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044614 GO:0045184 GO:0046907 GO:0048316 GO:0048468 GO:0048608 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051641 GO:0051649 GO:0060255 GO:0060287 GO:0061458 GO:0065007 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLE1

Protein Analysis

221

Amino Acids

25.76

Weight (kDa)

4.54

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 326
AccII CGCG 1 cut(s) 483
AciI CCGC 2 cut(s) 481, 624
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 2 cut(s) 271, 479
AflII CTTAAG 1 cut(s) 289
AgsI TTSAA 6 cut(s) 110, 398, 419, 443, 503, 521
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 3 cut(s) 51, 118, 464
AluI AGCT 3 cut(s) 51, 118, 464
Alw26I GTCTC 3 cut(s) 89, 94, 545
AoxI GGCC 1 cut(s) 347
Asp700I GAANNNNTTC 2 cut(s) 10, 393
AspS9I GGNCC 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 612
BcgI CGANNNNNNTGC 2 cut(s) 573, 607
BciT130I CCWGG 1 cut(s) 356
BclI TGATCA 2 cut(s) 238, 310
BcoDI GTCTC 3 cut(s) 89, 94, 545
BfmI CTRYAG 1 cut(s) 634
BfrI CTTAAG 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 612
BpuEI CTTGAG 3 cut(s) 148, 341, 569
BsaI GGTCTC 2 cut(s) 89, 94
BsaJI CCNNGG 1 cut(s) 354
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 84, 351
BseSI GKGCMC 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 483
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 349
BsiEI CGRYCG 1 cut(s) 82
BslFI GGGAC 1 cut(s) 12
BsmAI GTCTC 3 cut(s) 89, 94, 545
BsmFI GGGAC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 1 cut(s) 349
Bso31I GGTCTC 2 cut(s) 89, 94
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 5 cut(s) 79, 238, 280, 310, 514
BspACI CCGC 2 cut(s) 481, 624
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 2 cut(s) 85, 352
BspFNI CGCG 1 cut(s) 483
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 348
BspMAI CTGCAG 1 cut(s) 638
BspTI CTTAAG 1 cut(s) 289
BspTNI GGTCTC 2 cut(s) 89, 94
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 5 cut(s) 79, 238, 280, 310, 514
BssNAI GTATAC 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 491
BstAFI CTTAAG 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 3 cut(s) 93, 153, 360
BstFNI CGCG 1 cut(s) 483
BstKTI GATC 5 cut(s) 82, 241, 283, 313, 517
BstMAI GTCTC 3 cut(s) 89, 94, 545
BstMBI GATC 5 cut(s) 79, 238, 280, 310, 514
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 634
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 612
BstZ17I GTATAC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 349
BtgZI GCGATG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 351
CciI TCATGA 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 347
CseI GACGC 1 cut(s) 25
Csp6I GTAC 2 cut(s) 270, 478
CviAII CATG 3 cut(s) 20, 314, 581
CviJI RGCY 6 cut(s) 51, 118, 349, 353, 359, 464
CviKI_1 RGCY 6 cut(s) 51, 118, 349, 353, 359, 464
CviQI GTAC 2 cut(s) 270, 478
DdeI CTNAG 3 cut(s) 93, 153, 360
DpnI GATC 5 cut(s) 81, 240, 282, 312, 516
DpnII GATC 5 cut(s) 79, 238, 280, 310, 514
EciI GGCGGA 1 cut(s) 639
Eco31I GGTCTC 2 cut(s) 89, 94
Eco57I CTGAAG 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 23, 317, 584
FaqI GGGAC 1 cut(s) 12
FatI CATG 3 cut(s) 19, 313, 580
FauNDI CATATG 1 cut(s) 558
FbaI TGATCA 2 cut(s) 238, 310
FblI GTMKAC 1 cut(s) 326
HaeIII GGCC 1 cut(s) 349
HgaI GACGC 1 cut(s) 25
Hin1II CATG 3 cut(s) 23, 317, 584
HinfI GANTC 3 cut(s) 101, 508, 553
Hpy166II GTNNAC 3 cut(s) 327, 578, 631
Hpy188I TCNGA 4 cut(s) 16, 94, 199, 541
Hpy188III TCNNGA 2 cut(s) 314, 512
Hpy8I GTNNAC 3 cut(s) 327, 578, 631
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 3 cut(s) 458, 584, 636
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 3 cut(s) 93, 153, 360
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 3 cut(s) 23, 317, 584
Ksp22I TGATCA 2 cut(s) 238, 310
Kzo9I GATC 5 cut(s) 79, 238, 280, 310, 514
LpnPI CCDG 7 cut(s) 55, 72, 286, 341, 363, 368, 452
MaeII ACGT 1 cut(s) 574
MalI GATC 5 cut(s) 81, 240, 282, 312, 516
MboI GATC 5 cut(s) 79, 238, 280, 310, 514
MboII GAAGA 7 cut(s) 212, 233, 266, 401, 509, 607, 617
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 2 cut(s) 6, 585
MlyI GAGTC 3 cut(s) 110, 517, 547
MnlI CCTC 2 cut(s) 172, 652
MroXI GAANNNNTTC 2 cut(s) 10, 393
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 561
MspCI CTTAAG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeI CATATG 1 cut(s) 558
NdeII GATC 5 cut(s) 79, 238, 280, 310, 514
NlaIII CATG 3 cut(s) 23, 317, 584
NlaIV GGNNCC 1 cut(s) 348
NspI RCATGY 1 cut(s) 584
PagI TCATGA 1 cut(s) 313
PctI GAATGC 1 cut(s) 179
PdmI GAANNNNTTC 2 cut(s) 10, 393
PflFI GACNNNGTC 1 cut(s) 100
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 3 cut(s) 109, 516, 547
PpsI GAGTC 3 cut(s) 109, 516, 547
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 347
PstI CTGCAG 1 cut(s) 638
PsyI GACNNNGTC 1 cut(s) 100
PvuI CGATCG 1 cut(s) 82
RsaI GTAC 2 cut(s) 271, 479
RsaNI GTAC 2 cut(s) 270, 478
RseI CAYNNNNRTG 1 cut(s) 561
SaqAI TTAA 1 cut(s) 290
Sau3AI GATC 5 cut(s) 79, 238, 280, 310, 514
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 3 cut(s) 110, 517, 547
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 451
SetI ASST 7 cut(s) 53, 67, 120, 164, 275, 466, 577
SfcI CTRYAG 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 4 cut(s) 163, 289, 320, 548
SmoI CTYRAG 4 cut(s) 163, 289, 320, 548
Sse9I AATT 2 cut(s) 6, 585
SsiI CCGC 2 cut(s) 481, 624
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 1 cut(s) 577
TaqI TCGA 3 cut(s) 39, 78, 593
TaqII GACCGA 1 cut(s) 113
TasI AATT 2 cut(s) 6, 585
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TspDTI ATGAA 6 cut(s) 128, 234, 330, 350, 575, 618
TspGWI ACGGA 3 cut(s) 185, 401, 520
Tth111I GACNNNGTC 1 cut(s) 100
Vha464I CTTAAG 1 cut(s) 289
XceI RCATGY 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 2 cut(s) 10, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.