Rh4AG315800

Nucleoporin GLE1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009553
Physical Location & Seq
Forward (+)
62647800 .. 62654931
7132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG315800.1

Sequence Viewer

Length: 1404 bp
ATGACAATGGGAGGTGTTAAGTTGGAACTTCGTTGTCCCAAAAAAGTATACAGTGTTGCACTTGACCCTAACCCTGATTGGACCTTTGAGGATCTAGTTTCCGAGCTAAATGCCCTCGAAATCAAGATCAACAGCGGTTCTAAGGTTCCACTCCCATTTGCTAAAGATAAATCAAGGGATATATCCAATTGGAAGAGTAATGGGAGAAACTCTAGTAGCCCGTTTGTTATGCGTGTGTTTGAGGATGACATGGACAACATTGATGCCGAAGATGAGGAGGTTCATGATCAGAAGTCCATGGTTGCTAAACGGTTTAATTTTGATGAACTCTATCTCAGTGACAGTGATGATTCTGGTGACGAATCATCTTTTGGCGCCGAACCTTACCTAATGGAGAAGGTTGATCTAGTGGAAAGTGGTTTGCTCGAGCTATCCCGTGAACATCAGTTCAAAGTTAAGGAGGAAATTAGGAACCAAATATCAGCATTAGAGACAGAGCTGAAGAGTGAAACTGACAAGTCTATTTCTGCACTTGTTCGAGTTGAGAAATATAGAAAAGAAAGATCTGAAATGGATAGAAAACTAGACACTCAATATCAACGCAAGATAGCGGAAGCACTTGATAATCACTTAACTGTTGTCCAGCGAGACCTTGAAGTCAGATCTCAAATAGAAGAAAGAAAAATAAGAATTGATGCAGCTTATGAAGATGCTAAACGAAAGGAAGCTGAAGAAAAGCTTCGACAAGAACGAGCTAAAGCGGAAGCTGAGGCAAAAAGAGTTGAGGAAGCAAAGAGAGCTGAGGAAGCAAAAAGAGCTGCTTTGGAAGCTCAGAGAAGAGCAGCTAATGAAGCTGCAGCAAAAAAAGCTTCTGAAGCCTCAAAGAGGCCTGATACTGATGCCAATTTGGGAACTTCTAATGCTCAATCCGGTGGACCTCAAGTAAATAAGCCAGCAGCAGGAGCTAACAAAATCAGGGCAGCTGAAAGTGCTTTAAATTTAGAGCAGAGGAGACTACAAAAGTTAAAACAGTTGGATGAAGAAGTCCAGGCACTAAGATCAAGTTCCAATGAGAATTTTGGGAAGTATGAGAGGCAAATTGCTAAGTTGATCCAACAAATTACAGGAACAACAGAAAATGTCAGACAAAAAGAATATGATCTACTCAAGATCTTTTGCGATGCACGTTGCCCGCAATCTATCAAAACTGCAGCATTGGCAAAGAAGGTCGTCTCCAACTGTAAACGCCCGGGGAATCCTGCATTTGCACAAGCATTCGTCATTGTTCGCATTACTTCAAAGGTTCCACATGCAATGGACCTTATCCTTGCTGAGTTACACAAAGCTTGCATCTATACAGTTCCAAAGCACTACTCACGGGTAAGTGAATCTCTTAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000822 GO:0003006 GO:0003341 GO:0003351 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006403 GO:0006405 GO:0006406 GO:0006417 GO:0006446 GO:0006449 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007389 GO:0007399 GO:0007422 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0008289 GO:0009791 GO:0009799 GO:0009855 GO:0009889 GO:0009987 GO:0010001 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0014009 GO:0014010 GO:0014037 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022008 GO:0022414 GO:0030154 GO:0030182 GO:0031323 GO:0031326 GO:0031369 GO:0031503 GO:0031967 GO:0031975 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0036094 GO:0042063 GO:0042886 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043244 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044614 GO:0045184 GO:0046907 GO:0048316 GO:0048468 GO:0048608 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051641 GO:0051649 GO:0060255 GO:0060287 GO:0061458 GO:0065007 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLE1

Protein Analysis

467

Amino Acids

52.81

Weight (kDa)

7.04

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLE1 PF07817 342 - 459 4.2e-13 GLE1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 656
AccB1I GGYRCC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 48
AciI CCGC 4 cut(s) 135, 611, 761, 1193
AclWI GGATC 2 cut(s) 99, 1105
AcsI RAATTY 2 cut(s) 997, 1075
AcuI CTGAAG 3 cut(s) 521, 750, 894
AcyI GRCGYC 1 cut(s) 375
AfiI CCNNNNNNNGG 2 cut(s) 885, 959
AflII CTTAAG 1 cut(s) 1394
AgsI TTSAA 3 cut(s) 451, 656, 1299
AjnI CCWGG 1 cut(s) 1047
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
Alw26I GTCTC 4 cut(s) 485, 642, 1006, 1237
AlwI GGATC 2 cut(s) 99, 1105
Ama87I CYCGRG 2 cut(s) 425, 1249
AoxI GGCC 1 cut(s) 887
ApeKI GCWGC 8 cut(s) 698, 818, 842, 854, 857, 956, 980, 1211
ApoI RAATTY 2 cut(s) 997, 1075
Asp700I GAANNNNTTC 1 cut(s) 738
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 3 cut(s) 81, 935, 1318
AsuC2I CCSGG 2 cut(s) 1250, 1251
AsuHPI GGTGA 1 cut(s) 368
AvaI CYCGRG 2 cut(s) 425, 1249
AvaII GGWCC 3 cut(s) 81, 935, 1318
BanI GGYRCC 1 cut(s) 374
BbvCI CCTCAGC 2 cut(s) 768, 801
BbvI GCAGC 8 cut(s) 710, 805, 841, 854, 869, 968, 992, 1223
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 1049
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 2 cut(s) 1250, 1251
BcoDI GTCTC 4 cut(s) 485, 642, 1006, 1237
BfaI CTAG 4 cut(s) 95, 213, 407, 584
BfmI CTRYAG 2 cut(s) 855, 1209
BfoI RGCGCY 1 cut(s) 378
BfrI CTTAAG 1 cut(s) 1394
BglII AGATCT 3 cut(s) 563, 662, 1170
BisI GCNGC 8 cut(s) 699, 819, 843, 855, 858, 957, 981, 1212
BlsI GCNGC 8 cut(s) 700, 820, 844, 856, 859, 958, 982, 1213
Bme1390I CCNGG 3 cut(s) 1049, 1250, 1251
Bme18I GGWCC 3 cut(s) 81, 935, 1318
BmeT110I CYCGRG 2 cut(s) 425, 1249
BmgT120I GGNCC 3 cut(s) 81, 935, 1318
BmiI GGNNCC 4 cut(s) 147, 376, 473, 1305
BmrFI CCNGG 3 cut(s) 1049, 1250, 1251
BmsI GCATC 6 cut(s) 253, 685, 700, 889, 1171, 1359
Bpu10I CCTNAGC 2 cut(s) 768, 801
BpuEI CTTGAG 2 cut(s) 924, 1151
BpuMI CCSGG 2 cut(s) 1250, 1251
BsaHI GRCGYC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 297, 1249, 1250
BsaWI WCCGGW 1 cut(s) 929
Bsc4I CCNNNNNNNGG 2 cut(s) 885, 959
Bse3DI GCAATG 1 cut(s) 1320
BseBI CCWGG 1 cut(s) 1049
BseDI CCNNGG 3 cut(s) 297, 1249, 1250
BseGI GGATG 2 cut(s) 250, 1042
BseLI CCNNNNNNNGG 2 cut(s) 885, 959
BseMI GCAATG 1 cut(s) 1320
BseMII CTCAG 5 cut(s) 349, 759, 792, 845, 1323
BseRI GAGGAG 2 cut(s) 290, 1024
BseXI GCAGC 8 cut(s) 710, 805, 841, 854, 869, 968, 992, 1223
BsgI GTGCAG 1 cut(s) 513
BshFI GGCC 1 cut(s) 889
BshNI GGYRCC 1 cut(s) 374
BsiHKCI CYCGRG 2 cut(s) 425, 1249
BsiSI CCGG 2 cut(s) 930, 1250
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 885, 959
BsmAI GTCTC 4 cut(s) 485, 642, 1006, 1237
BsmBI CGTCTC 1 cut(s) 1237
BsmFI GGGAC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 1274
BsnI GGCC 1 cut(s) 889
Bso31I GGTCTC 1 cut(s) 642
BsoBI CYCGRG 2 cut(s) 425, 1249
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 4 cut(s) 135, 611, 761, 1193
BspANI GGCC 1 cut(s) 889
BspCNI CTCAG 5 cut(s) 348, 760, 793, 844, 1324
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 4 cut(s) 147, 376, 473, 1305
BspMAI CTGCAG 2 cut(s) 859, 1213
BspPI GGATC 2 cut(s) 99, 1105
BspQI GCTCTTC 1 cut(s) 832
BspT107I GGYRCC 1 cut(s) 374
BspTI CTTAAG 1 cut(s) 1394
BspTNI GGTCTC 1 cut(s) 642
BsrDI GCAATG 1 cut(s) 1320
BssECI CCNNGG 3 cut(s) 297, 1249, 1250
BssNAI GTATAC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 1049
Bst4CI ACNGT 7 cut(s) 53, 312, 344, 637, 1032, 1241, 1360
Bst6I CTCTTC 3 cut(s) 188, 497, 832
BstACI GRCGYC 1 cut(s) 375
BstAFI CTTAAG 1 cut(s) 1394
BstC8I GCNNGC 3 cut(s) 954, 1193, 1348
BstDEI CTNAG 8 cut(s) 141, 335, 768, 801, 831, 1055, 1104, 1332
BstDSI CCRYGG 1 cut(s) 297
BstENI CCTNNNNNAGG 1 cut(s) 883
BstF5I GGATG 2 cut(s) 250, 1042
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstMAI GTCTC 4 cut(s) 485, 642, 1006, 1237
BstNI CCWGG 1 cut(s) 1049
BstNSI RCATGY 1 cut(s) 1313
BstSCI CCNGG 3 cut(s) 1047, 1248, 1249
BstSFI CTRYAG 2 cut(s) 855, 1209
BstV1I GCAGC 8 cut(s) 710, 805, 841, 854, 869, 968, 992, 1223
BstX2I RGATCY 4 cut(s) 91, 563, 662, 1170
BstYI RGATCY 4 cut(s) 91, 563, 662, 1170
BstZ17I GTATAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 889
BtgI CCRYGG 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 1194
BtsCI GGATG 2 cut(s) 250, 1042
BtsIMutI CAGTG 3 cut(s) 58, 343, 349
Cac8I GCNNGC 3 cut(s) 954, 1193, 1348
CciI TCATGA 1 cut(s) 283
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 81, 935, 1318
Cfr9I CCCGGG 1 cut(s) 1249
CviAII CATG 4 cut(s) 250, 284, 298, 1310
DdeI CTNAG 8 cut(s) 141, 335, 768, 801, 831, 1055, 1104, 1332
DinI GGCGCC 1 cut(s) 376
DraI TTTAAA 1 cut(s) 996
DrdI GACNNNNNNGTC 1 cut(s) 656
DseDI GACNNNNNNGTC 1 cut(s) 656
Eam1104I CTCTTC 3 cut(s) 188, 497, 832
EarI CTCTTC 3 cut(s) 188, 497, 832
Eco130I CCWWGG 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 889
Eco31I GGTCTC 1 cut(s) 642
Eco47I GGWCC 3 cut(s) 81, 935, 1318
Eco57I CTGAAG 3 cut(s) 521, 750, 894
Eco88I CYCGRG 2 cut(s) 425, 1249
EcoNI CCTNNNNNAGG 1 cut(s) 883
EcoRII CCWGG 1 cut(s) 1047
EcoT14I CCWWGG 1 cut(s) 297
EgeI GGCGCC 1 cut(s) 376
EheI GGCGCC 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 1237
FaeI CATG 4 cut(s) 253, 287, 301, 1313
FalI AAGNNNNNCTT 4 cut(s) 723, 755, 805, 837
FaqI GGGAC 1 cut(s) 21
FatI CATG 4 cut(s) 249, 283, 297, 1309
FauI CCCGC 1 cut(s) 1200
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 8 cut(s) 699, 819, 843, 855, 858, 957, 981, 1212
FokI GGATG 2 cut(s) 257, 1049
Fsp4HI GCNGC 8 cut(s) 699, 819, 843, 855, 858, 957, 981, 1212
FspBI CTAG 4 cut(s) 95, 213, 407, 584
GlaI GCGC 1 cut(s) 376
GluI GCNGC 8 cut(s) 699, 819, 843, 855, 858, 957, 981, 1212
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 1 cut(s) 889
HapII CCGG 2 cut(s) 930, 1250
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 4 cut(s) 253, 287, 301, 1313
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HindIII AAGCTT 3 cut(s) 737, 867, 1344
HinfI GANTC 4 cut(s) 350, 362, 1255, 1388
HpaII CCGG 2 cut(s) 930, 1250
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 4 cut(s) 49, 440, 935, 1244
Hpy188I TCNGA 7 cut(s) 103, 291, 568, 662, 834, 874, 1145
Hpy188III TCNNGA 3 cut(s) 124, 284, 1168
Hpy8I GTNNAC 4 cut(s) 49, 440, 935, 1244
HpyAV CCTTC 2 cut(s) 391, 1219
HpyCH4III ACNGT 7 cut(s) 53, 312, 344, 637, 1032, 1241, 1360
HpyCH4IV ACGT 1 cut(s) 1186
HpyF3I CTNAG 8 cut(s) 141, 335, 768, 801, 831, 1055, 1104, 1332
HpySE526I ACGT 1 cut(s) 1186
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 4 cut(s) 253, 287, 301, 1313
HspAI GCGC 1 cut(s) 375
KasI GGCGCC 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 286
LguI GCTCTTC 1 cut(s) 832
LmnI GCTCC 1 cut(s) 962
Lsp1109I GCAGC 8 cut(s) 710, 805, 841, 854, 869, 968, 992, 1223
LweI GCATC 6 cut(s) 253, 685, 700, 889, 1171, 1359
MaeI CTAG 4 cut(s) 95, 213, 407, 584
MaeII ACGT 1 cut(s) 1186
MaeIII GTNAC 3 cut(s) 338, 356, 1335
MboII GAAGA 8 cut(s) 205, 281, 514, 686, 719, 743, 849, 1052
MfeI CAATTG 1 cut(s) 187
MflI RGATCY 4 cut(s) 91, 563, 662, 1170
MluCI AATT 9 cut(s) 187, 316, 465, 690, 904, 997, 1075, 1098, 1119
Mly113I GGCGCC 1 cut(s) 375
MmeI TCCRAC 3 cut(s) 1014, 1138, 1260
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 8 cut(s) 18, 315, 456, 632, 995, 1025, 1395, 1402
MspA1I CMGCKG 2 cut(s) 135, 983
MspCI CTTAAG 1 cut(s) 1394
MspI CCGG 2 cut(s) 930, 1250
MspR9I CCNGG 3 cut(s) 1049, 1250, 1251
MunI CAATTG 1 cut(s) 187
Mva1269I GAATGC 1 cut(s) 1274
MvaI CCWGG 1 cut(s) 1049
NarI GGCGCC 1 cut(s) 375
NciI CCSGG 2 cut(s) 1250, 1251
NcoI CCATGG 1 cut(s) 297
NlaIII CATG 4 cut(s) 253, 287, 301, 1313
NlaIV GGNNCC 4 cut(s) 147, 376, 473, 1305
NmuCI GTSAC 2 cut(s) 338, 356
NspI RCATGY 1 cut(s) 1313
PaeR7I CTCGAG 1 cut(s) 425
PagI TCATGA 1 cut(s) 283
PceI AGGCCT 1 cut(s) 889
PciSI GCTCTTC 1 cut(s) 832
PcsI WCGNNNNNNNCGW 1 cut(s) 748
PctI GAATGC 1 cut(s) 1274
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 4 cut(s) 350, 362, 1255, 1388
PkrI GCNGC 8 cut(s) 700, 820, 844, 856, 859, 958, 982, 1213
PluTI GGCGCC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 1047
PspGI CCWGG 1 cut(s) 1047
PspN4I GGNNCC 4 cut(s) 147, 376, 473, 1305
PspPI GGNCC 3 cut(s) 81, 935, 1318
PspXI VCTCGAGB 1 cut(s) 425
PstI CTGCAG 2 cut(s) 859, 1213
PsuI RGATCY 4 cut(s) 91, 563, 662, 1170
PvuII CAGCTG 1 cut(s) 983
SapI GCTCTTC 1 cut(s) 832
SaqAI TTAA 8 cut(s) 18, 315, 456, 632, 995, 1025, 1395, 1402
SatI GCNGC 8 cut(s) 699, 819, 843, 855, 858, 957, 981, 1212
Sau96I GGNCC 3 cut(s) 81, 935, 1318
ScrFI CCNGG 3 cut(s) 1049, 1250, 1251
SfaNI GCATC 6 cut(s) 253, 685, 700, 889, 1171, 1359
SfcI CTRYAG 2 cut(s) 855, 1209
SfoI GGCGCC 1 cut(s) 376
Sfr274I CTCGAG 1 cut(s) 425
SinI GGWCC 3 cut(s) 81, 935, 1318
SlaI CTCGAG 1 cut(s) 425
SmaI CCCGGG 1 cut(s) 1251
SmlI CTYRAG 4 cut(s) 425, 939, 1166, 1394
SmoI CTYRAG 4 cut(s) 425, 939, 1166, 1394
Sse9I AATT 9 cut(s) 187, 316, 465, 690, 904, 997, 1075, 1098, 1119
SseBI AGGCCT 1 cut(s) 889
SsiI CCGC 4 cut(s) 135, 611, 761, 1193
SspDI GGCGCC 1 cut(s) 374
SspMI CTAG 4 cut(s) 95, 213, 407, 584
StuI AGGCCT 1 cut(s) 889
StyD4I CCNGG 3 cut(s) 1047, 1248, 1249
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 7 cut(s) 53, 312, 344, 637, 1032, 1241, 1360
TaiI ACGT 1 cut(s) 1189
TaqI TCGA 4 cut(s) 117, 426, 538, 742
TasI AATT 9 cut(s) 187, 316, 465, 690, 904, 997, 1075, 1098, 1119
TfiI GAWTC 4 cut(s) 350, 362, 1255, 1388
Tru1I TTAA 8 cut(s) 18, 315, 456, 632, 995, 1025, 1395, 1402
Tru9I TTAA 8 cut(s) 18, 315, 456, 632, 995, 1025, 1395, 1402
TscAI CASTG 3 cut(s) 58, 343, 349
TseFI GTSAC 2 cut(s) 338, 356
TseI GCWGC 8 cut(s) 698, 818, 842, 854, 857, 956, 980, 1211
Tsp45I GTSAC 2 cut(s) 338, 356
TspDTI ATGAA 5 cut(s) 272, 339, 720, 864, 1053
TspMI CCCGGG 1 cut(s) 1249
TspRI CASTG 3 cut(s) 58, 343, 349
Vha464I CTTAAG 1 cut(s) 1394
VpaK11BI GGWCC 3 cut(s) 81, 935, 1318
XagI CCTNNNNNAGG 1 cut(s) 883
XapI RAATTY 2 cut(s) 997, 1075
XceI RCATGY 1 cut(s) 1313
XhoI CTCGAG 1 cut(s) 425
XmaI CCCGGG 1 cut(s) 1249
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 4 cut(s) 95, 213, 407, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.