Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013841

Physical Location & Seq

Genomic Coordinates Reverse (-)

5777397 .. 5779572

Gene Structure 2176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGAGGAGTGTCCTTCCTCTCCACTGTTCCTTCCTTCACCAACACAACCAATCATCAACATCTCACTACACTCTCTTCTTCTTCTCATCGCTCTGCTGTTATACGATGTTCCAAGATTGAACCTCAAGTTTCCGGTGAAAGTTTAGCTTTCCACCGCCGTGATGTTCTCAAACTCGCCGGCACTGCAGTCGGAATGGAATTAATAGGCAACGGTTTCATTAACAATGTGGGTGATGCAAAAGCTGCTGACTTGAATCAACGTAGACAACGATCCGAGTTTCAATCAAAGATCAAGATTTTGCTTTCAACCACCATTAAGGCTAAACCGGAGCTTGTACCTTCCTTACTCAAACTAGCTCTCAATGATGCTATGACTTATGATAAGGCTACTAAATCCGGGGGAGCCAATGGATCCATACGGTTCAGCTCTGAGCTAAGTAGAGCAGAGAATGAGGGACTTTCTGATGGGTTGAGTTTGATAGAGGAAGTGAAGAAGGAGATTGACTCTATCTCGAAGGGAGGTCCTATTTCATATGCAGATATCATTCAATTAGCAGGACAATCAGCGGTCAAGTTTACATATTTAGCATCGGCTATCCGAAAATGTGGTGGAAATGAAGAGAAGGGGAACTTACTTTACACAGCATATGGTTCAGCTGGTCAGTGGGGATTGTTTGATAGAAATTTTGGAAGGAGTGATGCAACAGAGGCTGATCCAGAAGGCAGAGTCCCACAATGGGGGAAAGCAACTGTGCAAGAGATGAAAGATAAGTTCATTGCTGTTGGATTGGGTCCTCGTCAGCTAGCTGTAATGTCTGCATTCTTGGGTCCTGATCAAGCTGCAACAGAACAGCTCTTAGCTACTGACCCTCAAGTTGCTCCATGGGTTCAGAAGTATCAAAGAAGCCGTGAAACCGTATCTCAGACTGATTACGAGGTTGATCTCATAACTGCATTCACAAAGCTAAGTTGCTTAGGACAGCAAATCAACTTCGAGGCATATACATATCCCGTCGAACGGATCAATCTGAGCAAACTCAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009636 GO:0009987 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

349

Amino Acids

37.93

Weight (kDa)

8.59

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	150 - 320	3.8e-20	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09010 AT4G09010 AT4G09010
fragaria_vesca	FvH4_5g36620
malus_domestica	MD15G1373900.v1.1
prunus_persica	Prupe.1G522500_v2.0.a1
pyrus_communis	pycom15g33500
rosa_chinensis	RchiOBHm_Chr7g0242391 RchiOBHm_Chr7g0242541
rosa_laevigata	RLG00000000895
rosa_roxburghii	Rroxscaffold_3G00222710
rosa_rugosa	Rorug07G0315200
rosa_samantha	Rh7AG470700 Rh7BG440600 Rh7CG487300 Rh7DG455800
rosa_wichuraiana	Rw0G009520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AciI	CCGC	2 cut(s)	157, 569
AclWI	GGATC	5 cut(s)	267, 408, 421, 710, 1031
AcsI	RAATTY	1 cut(s)	685
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	3 cut(s)	739, 740, 1020
AgsI	TTSAA	5 cut(s)	122, 256, 284, 309, 551
AleI	CACNNNNGTG	1 cut(s)	159
AlwI	GGATC	5 cut(s)	267, 408, 421, 710, 1031
AlwNI	CAGNNNCTG	1 cut(s)	713
ApeKI	GCWGC	2 cut(s)	245, 842
ApoI	RAATTY	1 cut(s)	685
AseI	ATTAAT	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	524, 794, 830
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	3 cut(s)	31, 149, 245
AsuNHI	GCTAGC	1 cut(s)	805
AvaII	GGWCC	3 cut(s)	524, 794, 830
BamHI	GGATCC	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	232, 829
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	2 cut(s)	144, 894
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	400
BfaI	CTAG	2 cut(s)	356, 806
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	2 cut(s)	246, 843
BlsI	GCNGC	2 cut(s)	247, 844
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	3 cut(s)	524, 794, 830
BmgT120I	GGNCC	3 cut(s)	524, 794, 830
BmiI	GGNNCC	4 cut(s)	406, 415, 795, 831
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	4 cut(s)	226, 358, 599, 691
BmtI	GCTAGC	1 cut(s)	809
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
Bpu10I	CCTNAGC	1 cut(s)	976
BpuEI	CTTGAG	3 cut(s)	111, 858, 1025
BpuMI	CCSGG	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	399, 884
BsaWI	WCCGGW	2 cut(s)	134, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	739, 740, 1020
Bse118I	RCCGGY	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	777
BseDI	CCNNGG	2 cut(s)	399, 884
BseLI	CCNNNNNNNGG	3 cut(s)	739, 740, 1020
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	3 cut(s)	423, 938, 1022
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	232, 829
BsiSI	CCGG	4 cut(s)	135, 180, 329, 399
BslFI	GGGAC	2 cut(s)	471, 716
BslI	CCNNNNNNNGG	3 cut(s)	739, 740, 1020
BsmFI	GGGAC	2 cut(s)	471, 716
BsmI	GAATGC	2 cut(s)	821, 956
Bsp143I	GATC	7 cut(s)	272, 291, 413, 715, 835, 943, 1023
Bsp19I	CCATGG	1 cut(s)	884
BspACI	CCGC	2 cut(s)	157, 569
BspCNI	CTCAG	3 cut(s)	424, 937, 1023
BspLI	GGNNCC	4 cut(s)	406, 415, 795, 831
BspMAI	CTGCAG	1 cut(s)	190
BspOI	GCTAGC	1 cut(s)	809
BspPI	GGATC	5 cut(s)	267, 408, 421, 710, 1031
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	399, 884
BssMI	GATC	7 cut(s)	272, 291, 413, 715, 835, 943, 1023
BssT1I	CCWWGG	1 cut(s)	884
Bst4CI	ACNGT	5 cut(s)	28, 215, 423, 754, 919
Bst6I	CTCTTC	2 cut(s)	82, 615
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	181, 807
BstDEI	CTNAG	7 cut(s)	432, 437, 859, 924, 968, 976, 1031
BstDSI	CCRYGG	1 cut(s)	884
BstKTI	GATC	7 cut(s)	275, 294, 416, 718, 838, 946, 1026
BstMBI	GATC	7 cut(s)	272, 291, 413, 715, 835, 943, 1023
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 245, 710
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	232, 829
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	884
BtgZI	GCGATG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	3 cut(s)	24, 183, 671
Cac8I	GCNNGC	2 cut(s)	181, 807
CaiI	CAGNNNCTG	1 cut(s)	713
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	3 cut(s)	524, 794, 830
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	1 cut(s)	885
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	7 cut(s)	432, 437, 859, 924, 968, 976, 1031
DpnI	GATC	7 cut(s)	274, 293, 415, 717, 837, 945, 1025
DpnII	GATC	7 cut(s)	272, 291, 413, 715, 835, 943, 1023
Eam1104I	CTCTTC	2 cut(s)	82, 615
EarI	CTCTTC	2 cut(s)	82, 615
Eco130I	CCWWGG	1 cut(s)	884
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	3 cut(s)	524, 794, 830
EcoO109I	RGGNCCY	3 cut(s)	524, 794, 830
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	884
FaeI	CATG	1 cut(s)	888
FalI	AAGNNNNNCTT	4 cut(s)	133, 165, 617, 649
FaqI	GGGAC	2 cut(s)	471, 716
FatI	CATG	1 cut(s)	884
FauNDI	CATATG	2 cut(s)	535, 649
FbaI	TGATCA	1 cut(s)	835
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	246, 843
Fsp4HI	GCNGC	2 cut(s)	246, 843
FspBI	CTAG	2 cut(s)	356, 806
GluI	GCNGC	2 cut(s)	246, 843
HapII	CCGG	4 cut(s)	135, 180, 329, 399
Hin1II	CATG	1 cut(s)	888
HinfI	GANTC	3 cut(s)	256, 506, 729
HpaII	CCGG	4 cut(s)	135, 180, 329, 399
HphI	GGTGA	3 cut(s)	31, 149, 245
Hpy166II	GTNNAC	2 cut(s)	266, 579
Hpy188I	TCNGA	8 cut(s)	194, 277, 433, 466, 602, 894, 927, 1032
Hpy188III	TCNNGA	4 cut(s)	295, 514, 719, 833
Hpy8I	GTNNAC	2 cut(s)	266, 579
Hpy99I	CGWCG	1 cut(s)	1019
HpyAV	CCTTC	9 cut(s)	25, 42, 46, 351, 490, 511, 619, 687, 716
HpyCH4III	ACNGT	5 cut(s)	28, 215, 423, 754, 919
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	8 cut(s)	188, 239, 539, 704, 757, 821, 845, 956
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 245, 710
HpyF3I	CTNAG	7 cut(s)	432, 437, 859, 924, 968, 976, 1031
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	888
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	7 cut(s)	272, 291, 413, 715, 835, 943, 1023
LmnI	GCTCC	3 cut(s)	331, 404, 886
LpnPI	CCDG	8 cut(s)	148, 193, 342, 412, 543, 645, 732, 846
Lsp1109I	GCAGC	2 cut(s)	232, 829
LweI	GCATC	4 cut(s)	226, 358, 599, 691
MaeI	CTAG	2 cut(s)	356, 806
MaeII	ACGT	1 cut(s)	262
MalI	GATC	7 cut(s)	274, 293, 415, 717, 837, 945, 1025
MboI	GATC	7 cut(s)	272, 291, 413, 715, 835, 943, 1023
MboII	GAAGA	5 cut(s)	69, 72, 75, 505, 632
MflI	RGATCY	1 cut(s)	413
MluCI	AATT	3 cut(s)	200, 551, 685
MlyI	GAGTC	2 cut(s)	500, 738
MmeI	TCCRAC	2 cut(s)	172, 766
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	3 cut(s)	203, 222, 318
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	569, 659
MspI	CCGG	4 cut(s)	135, 180, 329, 399
MspR9I	CCNGG	1 cut(s)	400
Mva1269I	GAATGC	2 cut(s)	821, 956
MwoI	GCNNNNNNNGC	3 cut(s)	185, 245, 710
NaeI	GCCGGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	884
NdeI	CATATG	2 cut(s)	535, 649
NdeII	GATC	7 cut(s)	272, 291, 413, 715, 835, 943, 1023
NgoMIV	GCCGGC	1 cut(s)	179
NheI	GCTAGC	1 cut(s)	805
NlaIII	CATG	1 cut(s)	888
NlaIV	GGNNCC	4 cut(s)	406, 415, 795, 831
OliI	CACNNNNGTG	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	268
PctI	GAATGC	2 cut(s)	821, 956
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	247, 844
PleI	GAGTC	2 cut(s)	500, 737
PpsI	GAGTC	2 cut(s)	500, 737
PpuMI	RGGWCCY	3 cut(s)	524, 794, 830
PshBI	ATTAAT	1 cut(s)	203
Psp5II	RGGWCCY	3 cut(s)	524, 794, 830
PspN4I	GGNNCC	4 cut(s)	406, 415, 795, 831
PspPI	GGNCC	3 cut(s)	524, 794, 830
PspPPI	RGGWCCY	3 cut(s)	524, 794, 830
PsrI	GAACNNNNNNTAC	2 cut(s)	623, 655
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	203, 222, 318
SatI	GCNGC	2 cut(s)	246, 843
Sau3AI	GATC	7 cut(s)	272, 291, 413, 715, 835, 943, 1023
Sau96I	GGNCC	3 cut(s)	524, 794, 830
SchI	GAGTC	2 cut(s)	500, 738
ScrFI	CCNGG	1 cut(s)	400
SfaNI	GCATC	4 cut(s)	226, 358, 599, 691
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	3 cut(s)	524, 794, 830
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	3 cut(s)	126, 873, 1040
SmoI	CTYRAG	3 cut(s)	126, 873, 1040
Sse9I	AATT	3 cut(s)	200, 551, 685
SsiI	CCGC	2 cut(s)	157, 569
SspMI	CTAG	2 cut(s)	356, 806
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	884
TaaI	ACNGT	5 cut(s)	28, 215, 423, 754, 919
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	3 cut(s)	515, 996, 1017
TasI	AATT	3 cut(s)	200, 551, 685
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	3 cut(s)	203, 222, 318
Tru9I	TTAA	3 cut(s)	203, 222, 318
TscAI	CASTG	3 cut(s)	31, 190, 671
TseI	GCWGC	2 cut(s)	245, 842
TspDTI	ATGAA	5 cut(s)	208, 522, 633, 766, 779
TspGWI	ACGGA	1 cut(s)	1036
TspRI	CASTG	3 cut(s)	31, 190, 671
VpaK11BI	GGWCC	3 cut(s)	524, 794, 830
VspI	ATTAAT	1 cut(s)	203
XapI	RAATTY	1 cut(s)	685
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	2 cut(s)	356, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.