Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013841

Physical Location & Seq

Genomic Coordinates Reverse (-)

7579169 .. 7583037

Gene Structure 3869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000895

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAAGTATTGGCATGCTAGAAAAGCCGTTGTTCGTCTGATTGACAGACTCGAGCAGGGAACCCTCAAAGAAGGCAAAAGTTTATCAAATCGAGTTATTGAATTGCACTGGAGACGGCAGGGGAACCCGCGGAAGAGGAAAGGTCCCATTTCAGGAACCAGGGGCACAGAAAGGTTCCGTTCAGAAGAACCCTTCTATGTTAACCCTCTACCATATTGTTTGTGTAAGAAGGAATTGCCGATGCAAGCAACTGAATATCCTACTCTTGGTGCTACAGTTCATTGCAGTAAAATTGAAGCTGATGCTGATAATGAGGACAGGTTTAAGCGGAGGAGCATTCTTACATGCTTTGGTGCCACTGTCGGCTTGGAATTAATAAGAAACTCAGGAACATTTTTTGAAATGGCTGGGGCTGCTGATTTGATACAACGCAGGCAGCATTCTGACTTTCAATCAAGTATCAAGGATACCTTATACAAGGCTATAAAGGTAATGGTATCCTATGTTATCCCATCCTTGCTCACTTTGGCATTGAATGATATTATGACTTATGACAAGGTCAGTGATTACGCAAATACACAGGGAGGAAAGAAAATACTTATTATCATCGCATATTATAGAGGAAGCAAAGAAGAAATTGATTCGAATTCCAAAGGGGGGCCCATTTCGTATTCTGATCTGATCCAATATGCAGCACAAAGTGCCATTAAGCAAACCTTTCTAGCTTCTGCAATTCGCAAATGTGGAGGAAACGTTGAGAAGGGCAATTTGTTATACACTGCATATGGTTCAAATGGTCAGGTTTGTTCTCAAAATTTGCATTTTGATTCTTATTGCATTGGTATTTACAAAGGAACTGTTCAAGAAATGAAAGACAAGTTTTCTGCCGTTGGCTTTGGACCCCGCCAGCTAGCTGTTATGTCTGGATTTTTGGGTCCTGATCAGATAGCCACAGAAACTTTATTAGCCACTGATCCAGAAGTTTTGCCGTGCGTTCAGCAGTGTCAGTGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009636 GO:0009987 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

339

Amino Acids

37.71

Weight (kDa)

9.03

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09010 AT4G09010 AT4G09010
fragaria_vesca	FvH4_5g36620
malus_domestica	MD15G1373900.v1.1
prunus_persica	Prupe.1G522500_v2.0.a1
pyrus_communis	pycom15g33500
rosa_chinensis	RchiOBHm_Chr7g0242391 RchiOBHm_Chr7g0242541
rosa_laevigata	RLG00000000895
rosa_roxburghii	Rroxscaffold_3G00222710
rosa_rugosa	Rorug07G0315200
rosa_samantha	Rh7AG470700 Rh7BG440600 Rh7CG487300 Rh7DG455800
rosa_wichuraiana	Rw0G009520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AccII	CGCG	1 cut(s)	130
AciI	CCGC	4 cut(s)	128, 130, 328, 904
AclI	AACGTT	1 cut(s)	753
AclWI	GGATC	2 cut(s)	676, 968
AcsI	RAATTY	2 cut(s)	646, 814
AdeI	CACNNNGTG	1 cut(s)	701
AfiI	CCNNNNNNNGG	3 cut(s)	152, 266, 657
AgsI	TTSAA	7 cut(s)	101, 296, 401, 452, 535, 792, 863
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	5 cut(s)	299, 725, 910, 914, 1014
AluI	AGCT	5 cut(s)	299, 725, 910, 914, 1014
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	676, 968
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	659
ApaI	GGGCCC	1 cut(s)	663
ApeKI	GCWGC	4 cut(s)	413, 436, 692, 1011
ApoI	RAATTY	2 cut(s)	646, 814
AseI	ATTAAT	1 cut(s)	374
AspS9I	GGNCC	5 cut(s)	143, 659, 660, 899, 935
AsuII	TTCGAA	1 cut(s)	644
AsuNHI	GCTAGC	1 cut(s)	910
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	3 cut(s)	143, 899, 935
BaeGI	GKGCMC	2 cut(s)	167, 663
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	663
BbvI	GCAGC	3 cut(s)	400, 448, 704
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	4 cut(s)	11, 131, 872, 973
BciT130I	CCWGG	1 cut(s)	160
BciVI	GTATCC	2 cut(s)	460, 508
BclI	TGATCA	1 cut(s)	940
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	3 cut(s)	18, 722, 911
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	2 cut(s)	460, 508
BisI	GCNGC	4 cut(s)	414, 437, 693, 1012
BlsI	GCNGC	4 cut(s)	415, 438, 694, 1013
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	3 cut(s)	143, 899, 935
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	5 cut(s)	143, 659, 660, 899, 935
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	231, 292
BmtI	GCTAGC	1 cut(s)	914
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	128, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 266, 657
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	128, 159
BseGI	GGATG	1 cut(s)	512
BseLI	CCNNNNNNNGG	3 cut(s)	152, 266, 657
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	2 cut(s)	167, 663
BseXI	GCAGC	3 cut(s)	400, 448, 704
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	661
BshNI	GGYRCC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	3 cut(s)	152, 266, 657
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	2 cut(s)	336, 439
BsnI	GGCC	1 cut(s)	661
BsoBI	CYCGRG	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	644
Bsp120I	GGGCCC	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	167, 663
Bsp143I	GATC	4 cut(s)	676, 681, 940, 973
BspACI	CCGC	4 cut(s)	128, 130, 328, 904
BspANI	GGCC	1 cut(s)	661
BspCNI	CTCAG	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	130
BspOI	GCTAGC	1 cut(s)	914
BspPI	GGATC	2 cut(s)	676, 968
BspT104I	TTCGAA	1 cut(s)	644
BspT107I	GGYRCC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	128, 159
BssMI	GATC	4 cut(s)	676, 681, 940, 973
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	3 cut(s)	277, 361, 859
Bst6I	CTCTTC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstBI	TTCGAA	1 cut(s)	644
BstC8I	GCNNGC	5 cut(s)	15, 246, 434, 908, 912
BstDEI	CTNAG	1 cut(s)	385
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	512
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	4 cut(s)	679, 684, 943, 976
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	4 cut(s)	676, 681, 940, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 413, 701
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	2 cut(s)	17, 348
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	2 cut(s)	167, 663
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	400, 448, 704
BsuI	GTATCC	2 cut(s)	460, 508
BsuRI	GGCC	1 cut(s)	661
BtgI	CCRYGG	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	592
BtsCI	GGATG	1 cut(s)	512
BtsI	GCAGTG	2 cut(s)	777, 1007
BtsIMutI	CAGTG	7 cut(s)	106, 357, 568, 777, 969, 1007, 1013
Cac8I	GCNNGC	5 cut(s)	15, 246, 434, 908, 912
Cfr13I	GGNCC	5 cut(s)	143, 659, 660, 899, 935
Cfr42I	CCGCGG	1 cut(s)	131
CviAII	CATG	2 cut(s)	14, 345
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	4 cut(s)	678, 683, 942, 975
DpnII	GATC	4 cut(s)	676, 681, 940, 973
DraIII	CACNNNGTG	1 cut(s)	701
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	663
Eco47I	GGWCC	3 cut(s)	143, 899, 935
Eco88I	CYCGRG	1 cut(s)	50
EcoO109I	RGGNCCY	3 cut(s)	143, 659, 935
EcoRI	GAATTC	1 cut(s)	646
EcoRII	CCWGG	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	663
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	2 cut(s)	17, 348
FalI	AAGNNNNNCTT	4 cut(s)	455, 487, 701, 733
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	2 cut(s)	13, 344
FauI	CCCGC	2 cut(s)	135, 911
FauNDI	CATATG	1 cut(s)	784
FbaI	TGATCA	1 cut(s)	940
Fnu4HI	GCNGC	4 cut(s)	414, 437, 693, 1012
FokI	GGATG	1 cut(s)	499
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	4 cut(s)	414, 437, 693, 1012
FspBI	CTAG	3 cut(s)	18, 722, 911
GluI	GCNGC	4 cut(s)	414, 437, 693, 1012
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	661
Hin1II	CATG	2 cut(s)	17, 348
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	48, 641, 827
HpaI	GTTAAC	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	6 cut(s)	39, 184, 445, 676, 681, 945
Hpy188III	TCNNGA	6 cut(s)	153, 387, 863, 924, 938, 977
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	4 cut(s)	65, 202, 223, 754
HpyCH4III	ACNGT	3 cut(s)	277, 361, 859
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	9 cut(s)	106, 244, 285, 692, 731, 782, 820, 837, 1011
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 413, 701
HpyF3I	CTNAG	1 cut(s)	385
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	2 cut(s)	17, 348
Ksp22I	TGATCA	1 cut(s)	940
KspAI	GTTAAC	1 cut(s)	202
KspI	CCGCGG	1 cut(s)	131
Kzo9I	GATC	4 cut(s)	676, 681, 940, 973
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	3 cut(s)	400, 448, 704
LweI	GCATC	2 cut(s)	231, 292
MaeI	CTAG	3 cut(s)	18, 722, 911
MaeII	ACGT	1 cut(s)	753
MalI	GATC	4 cut(s)	678, 683, 942, 975
MboI	GATC	4 cut(s)	676, 681, 940, 973
MboII	GAAGA	3 cut(s)	145, 197, 644
MhlI	GDGCHC	2 cut(s)	167, 663
MluCI	AATT	9 cut(s)	101, 233, 291, 371, 636, 646, 732, 766, 814
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	8 cut(s)	74, 129, 216, 307, 324, 578, 614, 740
MseI	TTAA	4 cut(s)	201, 324, 374, 708
MspA1I	CMGCKG	2 cut(s)	130, 1014
MspR9I	CCNGG	1 cut(s)	160
Mva1269I	GAATGC	2 cut(s)	336, 439
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	3 cut(s)	23, 413, 701
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	4 cut(s)	676, 681, 940, 973
NheI	GCTAGC	1 cut(s)	910
NlaIII	CATG	2 cut(s)	17, 348
NspI	RCATGY	2 cut(s)	17, 348
NspV	TTCGAA	1 cut(s)	644
PaeI	GCATGC	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	50
PctI	GAATGC	2 cut(s)	336, 439
PfeI	GAWTC	2 cut(s)	641, 827
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	4 cut(s)	415, 438, 694, 1013
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PpuMI	RGGWCCY	2 cut(s)	143, 935
PshBI	ATTAAT	1 cut(s)	374
Psp1406I	AACGTT	1 cut(s)	753
Psp5II	RGGWCCY	2 cut(s)	143, 935
Psp6I	CCWGG	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	158
PspOMI	GGGCCC	1 cut(s)	659
PspPI	GGNCC	5 cut(s)	143, 659, 660, 899, 935
PspPPI	RGGWCCY	2 cut(s)	143, 935
PspXI	VCTCGAGB	1 cut(s)	50
PsyI	GACNNNGTC	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	1014
SacII	CCGCGG	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	201, 324, 374, 708
SatI	GCNGC	4 cut(s)	414, 437, 693, 1012
Sau3AI	GATC	4 cut(s)	676, 681, 940, 973
Sau96I	GGNCC	5 cut(s)	143, 659, 660, 899, 935
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	167, 663
SfaNI	GCATC	2 cut(s)	231, 292
SfcI	CTRYAG	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	50
Sfr303I	CCGCGG	1 cut(s)	131
SfuI	TTCGAA	1 cut(s)	644
SgrBI	CCGCGG	1 cut(s)	131
SinI	GGWCC	3 cut(s)	143, 899, 935
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	9 cut(s)	101, 233, 291, 371, 636, 646, 732, 766, 814
SsiI	CCGC	4 cut(s)	128, 130, 328, 904
SspMI	CTAG	3 cut(s)	18, 722, 911
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	3 cut(s)	277, 361, 859
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	3 cut(s)	51, 91, 644
TasI	AATT	9 cut(s)	101, 233, 291, 371, 636, 646, 732, 766, 814
TfiI	GAWTC	2 cut(s)	641, 827
Tru1I	TTAA	4 cut(s)	201, 324, 374, 708
Tru9I	TTAA	4 cut(s)	201, 324, 374, 708
TscAI	CASTG	7 cut(s)	113, 364, 568, 784, 976, 1007, 1013
TseI	GCWGC	4 cut(s)	413, 436, 692, 1011
TspDTI	ATGAA	3 cut(s)	17, 269, 884
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	7 cut(s)	113, 364, 568, 784, 976, 1007, 1013
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	3 cut(s)	143, 899, 935
VspI	ATTAAT	1 cut(s)	374
XapI	RAATTY	2 cut(s)	646, 814
XceI	RCATGY	2 cut(s)	17, 348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	50
XspI	CTAG	3 cut(s)	18, 722, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.