Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013841

Physical Location & Seq

Genomic Coordinates Reverse (-)

5747484 .. 5752167

Gene Structure 4684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCCGTGTCTTTCCTTTCAACTGTCCCTAACCTGCTTCCTATTGTCCCCGTCAATGCTTCCATTACCTCTGCCCCAAGATATCCTACTCTTGGTGCTACAGTTCGTTGCAGTAAAATTGAAGCTGATGCTGATAATGAGGAAAGGTTTCAGCGGAGGAGCATTCTTACATGCTTTGGTGCCACTGTCGGCTTGGAACTAGTAAGAAGTTCAGGAACATTTGTTGAAATGGCTGAGGCTGCTGATTTGATACAACGCAGGCAGCGTTCTGAATTTCAATCAAGTATCAAAGATACCTTATATAAAGCTATAAAGGAAAATCCAGATGTTATCCCTTCCTTACTCACTTTGGCATTGAATGATATTATGACTTATGATAAGGCTTCGAAAACTGGGGGCCCAAATGGATCTATCCGATTCAGCTCAGAGATCAGCAGACCTGAAAACAAGGGACTTGTTGGTGCTTTGAATTTAGTAGAGGAAGCAAAGAAGGAAATTGATTCGAATTCCAAAGGGGGGCCCATTTCCTATTCTGATCTGATCCAATATGCAGCACAAAGTGCCATTAAGCAAACCTTTCTAGCTTCTGCAATTCGCAAATGTGGAGGAAACGTTGAGAAGGGCAATTTGTTATACACTGCATATGGTTCAAATGGTCAGTGGGGCTTATTTGAGAGGAATTTTGGAAGGGCAGATACCCAAGAGCCAGATCCAGAGGGAAGGGTTCCCCAGTGGGACAAAGCAAGTGTTCAAGAAATGAAAGACAAGTTTTCTGCCGTTGGCTTTGGCCCCCGCCAGCTAGCTGTTATGTCTGGATTTTTGGGTCCTGATCAGATAGCCACAGAAACTTTATTAGCCACTGATCCAGAAGTTTTGCCCTGGGTTCAGAAGTATCAGCGCAGCCGAGAAACAGTGTCAGAAACAGATTATGAGGTTGATTTGATAACTACGCTCACAAAGTTAAGTGGTTTGGGCCAACAAATCAATTATGAGGCATATACCTATCCAGTCAAAAAAGTTGATTTTAGCAAACTCAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009636 GO:0009987 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

347

Amino Acids

38.13

Weight (kDa)

5.61

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	97 - 272	6.7e-19	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09010 AT4G09010 AT4G09010
fragaria_vesca	FvH4_5g36620
malus_domestica	MD15G1373900.v1.1
prunus_persica	Prupe.1G522500_v2.0.a1
pyrus_communis	pycom15g33500
rosa_chinensis	RchiOBHm_Chr7g0242391 RchiOBHm_Chr7g0242541
rosa_laevigata	RLG00000000895
rosa_roxburghii	Rroxscaffold_3G00222710
rosa_rugosa	Rorug07G0315200
rosa_samantha	Rh7AG470700 Rh7BG440600 Rh7CG487300 Rh7DG455800
rosa_wichuraiana	Rw0G009520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	2 cut(s)	154, 793
AclI	AACGTT	1 cut(s)	612
AclWI	GGATC	4 cut(s)	415, 535, 704, 857
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	272, 469, 505, 679
AdeI	CACNNNGTG	1 cut(s)	560
AfiI	CCNNNNNNNGG	2 cut(s)	92, 516
AgsI	TTSAA	8 cut(s)	21, 122, 227, 278, 358, 469, 651, 752
AhlI	ACTAGT	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	878
AluBI	AGCT	6 cut(s)	125, 308, 423, 584, 799, 803
AluI	AGCT	6 cut(s)	125, 308, 423, 584, 799, 803
AlwI	GGATC	4 cut(s)	415, 535, 704, 857
AoxI	GGCC	5 cut(s)	3, 397, 518, 787, 973
ApaI	GGGCCC	2 cut(s)	401, 522
ApeKI	GCWGC	4 cut(s)	239, 262, 551, 900
ApoI	RAATTY	4 cut(s)	272, 469, 505, 679
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	7 cut(s)	397, 398, 518, 519, 788, 824, 973
AsuII	TTCGAA	2 cut(s)	386, 503
AsuNHI	GCTAGC	1 cut(s)	799
AvaII	GGWCC	1 cut(s)	824
BaeGI	GKGCMC	2 cut(s)	401, 522
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	2 cut(s)	401, 522
BarI	GAAGNNNNNNTAC	2 cut(s)	679, 711
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	4 cut(s)	226, 274, 563, 912
BceAI	ACGGC	1 cut(s)	761
BciT130I	CCWGG	1 cut(s)	880
BclI	TGATCA	1 cut(s)	829
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	3 cut(s)	200, 581, 800
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	42
BisI	GCNGC	4 cut(s)	240, 263, 552, 901
BlsI	GCNGC	4 cut(s)	241, 264, 553, 902
Bme1390I	CCNGG	1 cut(s)	880
Bme18I	GGWCC	1 cut(s)	824
BmgT120I	GGNCC	7 cut(s)	397, 398, 518, 519, 788, 824, 973
BmiI	GGNNCC	8 cut(s)	181, 398, 399, 519, 520, 726, 790, 825
BmrFI	CCNGG	1 cut(s)	880
BmrI	ACTGGG	2 cut(s)	402, 724
BmsI	GCATC	1 cut(s)	118
BmtI	GCTAGC	1 cut(s)	803
BmuI	ACTGGG	2 cut(s)	402, 724
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu14I	TTCGAA	2 cut(s)	386, 503
BsaJI	CCNNGG	2 cut(s)	878, 879
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 516
Bse1I	ACTGG	3 cut(s)	397, 730, 1007
BseBI	CCWGG	1 cut(s)	880
BseDI	CCNNGG	2 cut(s)	878, 879
BseLI	CCNNNNNNNGG	2 cut(s)	92, 516
BseMII	CTCAG	2 cut(s)	225, 438
BseNI	ACTGG	3 cut(s)	397, 730, 1007
BseRI	GAGGAG	1 cut(s)	172
BseSI	GKGCMC	2 cut(s)	401, 522
BseXI	GCAGC	4 cut(s)	226, 274, 563, 912
BshFI	GGCC	5 cut(s)	5, 399, 520, 789, 975
BshNI	GGYRCC	1 cut(s)	179
BslFI	GGGAC	4 cut(s)	11, 32, 465, 749
BslI	CCNNNNNNNGG	2 cut(s)	92, 516
BsmFI	GGGAC	4 cut(s)	11, 32, 465, 749
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	5 cut(s)	5, 399, 520, 789, 975
Bsp119I	TTCGAA	2 cut(s)	386, 503
Bsp120I	GGGCCC	2 cut(s)	397, 518
Bsp1286I	GDGCHC	2 cut(s)	401, 522
Bsp143I	GATC	7 cut(s)	407, 429, 535, 540, 709, 829, 862
BspACI	CCGC	2 cut(s)	154, 793
BspANI	GGCC	5 cut(s)	5, 399, 520, 789, 975
BspCNI	CTCAG	2 cut(s)	226, 437
BspLI	GGNNCC	8 cut(s)	181, 398, 399, 519, 520, 726, 790, 825
BspMI	ACCTGC	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	803
BspPI	GGATC	4 cut(s)	415, 535, 704, 857
BspT104I	TTCGAA	2 cut(s)	386, 503
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	3 cut(s)	397, 730, 1007
BssECI	CCNNGG	2 cut(s)	878, 879
BssMI	GATC	7 cut(s)	407, 429, 535, 540, 709, 829, 862
Bst2UI	CCWGG	1 cut(s)	880
Bst4CI	ACNGT	4 cut(s)	25, 103, 187, 913
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstBI	TTCGAA	2 cut(s)	386, 503
BstC8I	GCNNGC	3 cut(s)	260, 797, 801
BstDEI	CTNAG	2 cut(s)	234, 424
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	7 cut(s)	410, 432, 538, 543, 712, 832, 865
BstMBI	GATC	7 cut(s)	407, 429, 535, 540, 709, 829, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 560
BstNI	CCWGG	1 cut(s)	880
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	878
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	2 cut(s)	401, 522
BstV1I	GCAGC	4 cut(s)	226, 274, 563, 912
BstX2I	RGATCY	2 cut(s)	407, 709
BstYI	RGATCY	2 cut(s)	407, 709
BsuRI	GGCC	5 cut(s)	5, 399, 520, 789, 975
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	6 cut(s)	183, 636, 665, 737, 858, 918
BveI	ACCTGC	1 cut(s)	42
Cac8I	GCNNGC	3 cut(s)	260, 797, 801
CfoI	GCGC	1 cut(s)	900
Cfr13I	GGNCC	7 cut(s)	397, 398, 518, 519, 788, 824, 973
CviAII	CATG	1 cut(s)	171
DdeI	CTNAG	2 cut(s)	234, 424
DpnI	GATC	7 cut(s)	409, 431, 537, 542, 711, 831, 864
DpnII	GATC	7 cut(s)	407, 429, 535, 540, 709, 829, 862
DraIII	CACNNNGTG	1 cut(s)	560
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	2 cut(s)	401, 522
Eco32I	GATATC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	824
EcoO109I	RGGNCCY	3 cut(s)	397, 518, 824
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	878
EcoRV	GATATC	1 cut(s)	83
EcoT38I	GRGCYC	2 cut(s)	401, 522
FaeI	CATG	1 cut(s)	174
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	4 cut(s)	11, 32, 465, 749
FatI	CATG	1 cut(s)	170
FauI	CCCGC	1 cut(s)	800
FauNDI	CATATG	1 cut(s)	643
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	4 cut(s)	240, 263, 552, 901
FriOI	GRGCYC	2 cut(s)	401, 522
Fsp4HI	GCNGC	4 cut(s)	240, 263, 552, 901
FspBI	CTAG	3 cut(s)	200, 581, 800
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	4 cut(s)	240, 263, 552, 901
HaeIII	GGCC	5 cut(s)	5, 399, 520, 789, 975
HhaI	GCGC	1 cut(s)	900
Hin1II	CATG	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HinfI	GANTC	2 cut(s)	417, 500
Hpy188I	TCNGA	8 cut(s)	271, 416, 427, 535, 540, 834, 888, 919
Hpy188III	TCNNGA	7 cut(s)	213, 323, 713, 752, 813, 827, 866
HpyAV	CCTTC	5 cut(s)	345, 484, 613, 681, 714
HpyCH4III	ACNGT	4 cut(s)	25, 103, 187, 913
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	4 cut(s)	111, 551, 590, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 560
HpyF3I	CTNAG	2 cut(s)	234, 424
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	1 cut(s)	174
HspAI	GCGC	1 cut(s)	898
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	7 cut(s)	407, 429, 535, 540, 709, 829, 862
LmnI	GCTCC	1 cut(s)	159
Lsp1109I	GCAGC	4 cut(s)	226, 274, 563, 912
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	3 cut(s)	200, 581, 800
MaeII	ACGT	1 cut(s)	612
MalI	GATC	7 cut(s)	409, 431, 537, 542, 711, 831, 864
MboI	GATC	7 cut(s)	407, 429, 535, 540, 709, 829, 862
MflI	RGATCY	2 cut(s)	407, 709
MhlI	GDGCHC	2 cut(s)	401, 522
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	2 cut(s)	567, 962
MspA1I	CMGCKG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	880
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	880
MwoI	GCNNNNNNNGC	2 cut(s)	239, 560
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	7 cut(s)	407, 429, 535, 540, 709, 829, 862
NheI	GCTAGC	1 cut(s)	799
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	8 cut(s)	181, 398, 399, 519, 520, 726, 790, 825
NmeAIII	GCCGAG	1 cut(s)	929
NspI	RCATGY	1 cut(s)	174
NspV	TTCGAA	2 cut(s)	386, 503
PasI	CCCWGGG	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PctI	GAATGC	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	417, 500
PkrI	GCNGC	4 cut(s)	241, 264, 553, 902
PpuMI	RGGWCCY	1 cut(s)	824
Psp1406I	AACGTT	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	878
PspGI	CCWGG	1 cut(s)	878
PspN4I	GGNNCC	8 cut(s)	181, 398, 399, 519, 520, 726, 790, 825
PspOMI	GGGCCC	2 cut(s)	397, 518
PspPI	GGNCC	7 cut(s)	397, 398, 518, 519, 788, 824, 973
PspPPI	RGGWCCY	1 cut(s)	824
PsuI	RGATCY	2 cut(s)	407, 709
SaqAI	TTAA	2 cut(s)	567, 962
SatI	GCNGC	4 cut(s)	240, 263, 552, 901
Sau3AI	GATC	7 cut(s)	407, 429, 535, 540, 709, 829, 862
Sau96I	GGNCC	7 cut(s)	397, 398, 518, 519, 788, 824, 973
ScrFI	CCNGG	1 cut(s)	880
SduI	GDGCHC	2 cut(s)	401, 522
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	99
SfuI	TTCGAA	2 cut(s)	386, 503
SinI	GGWCC	1 cut(s)	824
SpeI	ACTAGT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	154, 793
SspMI	CTAG	3 cut(s)	200, 581, 800
StyD4I	CCNGG	1 cut(s)	878
TaaI	ACNGT	4 cut(s)	25, 103, 187, 913
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	2 cut(s)	386, 503
TfiI	GAWTC	2 cut(s)	417, 500
Tru1I	TTAA	2 cut(s)	567, 962
Tru9I	TTAA	2 cut(s)	567, 962
TscAI	CASTG	6 cut(s)	190, 643, 665, 737, 865, 918
TseI	GCWGC	4 cut(s)	239, 262, 551, 900
TspDTI	ATGAA	1 cut(s)	773
TspRI	CASTG	6 cut(s)	190, 643, 665, 737, 865, 918
VpaK11BI	GGWCC	1 cut(s)	824
XapI	RAATTY	4 cut(s)	272, 469, 505, 679
XceI	RCATGY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	3 cut(s)	200, 581, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.