Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013841

Physical Location & Seq

Genomic Coordinates Forward (+)

68647729 .. 68650835

Gene Structure 3107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAAAATCCAGATGTTATCCCATCCTTGCTCACTTTGGCATTGAATGATGTTATGACTTATGATAAGGCTTTGAAATCTGGGGGCCCAAATGGATCTATCAGAGTCAGCTCAGAGATCAGCAGACCTGAAAACAAGGGGCTTGTTGGTGCTTTGAATTTAGTAAAGGAAGCAAAGAAGGAAATCGATTCGAATTCCCGGGGTGGGGGGGTCATTTCCTATTCTGATCTGATCCAATATGCAGCACAAAGTGCCATTAAGCAAACCTTTCTAGCTTCTGCAATTTGCAAATGTGGAGGAAACGTTGAGAAGGGCAGTTTATTATACACTGCATATGGTTCAAATGGTCAGCGGGGCTTATTTGAGAGGAATTTTGGAAGGCCAGACACCCAAGAGCCAGATCCCGAGGGAAGGGTTCCCCAGTGGGACAAACTAGCTGTTATGTCTGCATTCTTGGGTCCTGATCAGACAGCCACAGAAACTTTATTAGCCACTGATCCAGAAGTACGTTTTGCCGTGGGTTTAGAAGTATCAGCGCAGAAACAGATTATGAGGTCAGTGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009636 GO:0009987 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

188

Amino Acids

20.15

Weight (kDa)

5.3

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	3 - 140	7.5e-12	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09010 AT4G09010 AT4G09010
fragaria_vesca	FvH4_5g36620
malus_domestica	MD15G1373900.v1.1
prunus_persica	Prupe.1G522500_v2.0.a1
pyrus_communis	pycom15g33500
rosa_chinensis	RchiOBHm_Chr7g0242391 RchiOBHm_Chr7g0242541
rosa_laevigata	RLG00000000895
rosa_roxburghii	Rroxscaffold_3G00222710
rosa_rugosa	Rorug07G0315200
rosa_samantha	Rh7AG470700 Rh7BG440600 Rh7CG487300 Rh7DG455800
rosa_wichuraiana	Rw0G009520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	352
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	4 cut(s)	103, 226, 395, 491
AcsI	RAATTY	3 cut(s)	157, 193, 370
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	3 cut(s)	204, 205, 411
AgsI	TTSAA	4 cut(s)	46, 76, 157, 342
AluBI	AGCT	3 cut(s)	111, 275, 437
AluI	AGCT	3 cut(s)	111, 275, 437
AlwI	GGATC	4 cut(s)	103, 226, 395, 491
Ama87I	CYCGRG	2 cut(s)	198, 404
AoxI	GGCC	2 cut(s)	85, 380
ApaI	GGGCCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	3 cut(s)	157, 193, 370
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	3 cut(s)	85, 86, 458
AsuC2I	CCSGG	2 cut(s)	199, 200
AsuII	TTCGAA	1 cut(s)	191
AvaI	CYCGRG	2 cut(s)	198, 404
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	500
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	2 cut(s)	199, 200
BfaI	CTAG	2 cut(s)	272, 434
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	199, 200
Bme18I	GGWCC	1 cut(s)	458
BmeT110I	CYCGRG	2 cut(s)	198, 404
BmgT120I	GGNCC	3 cut(s)	85, 86, 458
BmiI	GGNNCC	4 cut(s)	86, 87, 417, 459
BmrFI	CCNGG	2 cut(s)	199, 200
BmrI	ACTGGG	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	199, 200
Bsa29I	ATCGAT	1 cut(s)	186
BsaJI	CCNNGG	4 cut(s)	198, 199, 405, 516
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 205, 411
Bse1I	ACTGG	1 cut(s)	421
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	198, 199, 405, 516
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	3 cut(s)	204, 205, 411
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	421
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	254
BshFI	GGCC	2 cut(s)	87, 382
BshVI	ATCGAT	1 cut(s)	186
BsiHKCI	CYCGRG	2 cut(s)	198, 404
BsiSI	CCGG	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	3 cut(s)	204, 205, 411
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	87, 382
BsoBI	CYCGRG	2 cut(s)	198, 404
Bsp119I	TTCGAA	1 cut(s)	191
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	7 cut(s)	95, 117, 226, 231, 400, 463, 496
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	2 cut(s)	87, 382
BspCNI	CTCAG	1 cut(s)	125
BspDI	ATCGAT	1 cut(s)	186
BspLI	GGNNCC	4 cut(s)	86, 87, 417, 459
BspPI	GGATC	4 cut(s)	103, 226, 395, 491
BspT104I	TTCGAA	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	4 cut(s)	198, 199, 405, 516
BssMI	GATC	7 cut(s)	95, 117, 226, 231, 400, 463, 496
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	112
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	7 cut(s)	98, 120, 229, 234, 403, 466, 499
BstMBI	GATC	7 cut(s)	95, 117, 226, 231, 400, 463, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	197, 198
BstSLI	GKGCMC	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	95, 400
BstYI	RGATCY	2 cut(s)	95, 400
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	87, 382
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	23
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	4 cut(s)	327, 428, 492, 564
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	3 cut(s)	85, 86, 458
Cfr9I	CCCGGG	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	506
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	7 cut(s)	97, 119, 228, 233, 402, 465, 498
DpnII	GATC	7 cut(s)	95, 117, 226, 231, 400, 463, 496
DraIII	CACNNNGTG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	458
Eco88I	CYCGRG	2 cut(s)	198, 404
EcoO109I	RGGNCCY	2 cut(s)	85, 458
EcoRI	GAATTC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	89
FaiI	YATR	9 cut(s)	56, 63, 240, 325, 334, 336, 443, 551, 565
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	440
FauI	CCCGC	1 cut(s)	345
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	10
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	272, 434
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	87, 382
HapII	CCGG	1 cut(s)	199
HhaI	GCGC	1 cut(s)	538
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HinfI	GANTC	2 cut(s)	105, 188
HpaII	CCGG	1 cut(s)	199
Hpy188I	TCNGA	5 cut(s)	104, 115, 226, 231, 468
Hpy188III	TCNNGA	4 cut(s)	11, 404, 461, 500
HpyAV	CCTTC	4 cut(s)	172, 304, 372, 405
HpyCH4IV	ACGT	2 cut(s)	303, 508
HpyCH4V	TGCA	5 cut(s)	242, 281, 288, 332, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	112
HpySE526I	ACGT	2 cut(s)	303, 508
HspAI	GCGC	1 cut(s)	536
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	7 cut(s)	95, 117, 226, 231, 400, 463, 496
LpnPI	CCDG	9 cut(s)	24, 66, 141, 212, 396, 411, 434, 474, 513
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	2 cut(s)	272, 434
MaeII	ACGT	2 cut(s)	303, 508
MalI	GATC	7 cut(s)	97, 119, 228, 233, 402, 465, 498
MboI	GATC	7 cut(s)	95, 117, 226, 231, 400, 463, 496
MflI	RGATCY	2 cut(s)	95, 400
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	4 cut(s)	157, 193, 282, 370
MlyI	GAGTC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	290, 360, 400, 546
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	2 cut(s)	199, 200
Mva1269I	GAATGC	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	2 cut(s)	199, 200
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	7 cut(s)	95, 117, 226, 231, 400, 463, 496
NlaIV	GGNNCC	4 cut(s)	86, 87, 417, 459
NspV	TTCGAA	1 cut(s)	191
PctI	GAATGC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	458
Psp1406I	AACGTT	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	458
PspN4I	GGNNCC	4 cut(s)	86, 87, 417, 459
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	3 cut(s)	85, 86, 458
PspPPI	RGGWCCY	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	95, 400
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	7 cut(s)	95, 117, 226, 231, 400, 463, 496
Sau96I	GGNCC	3 cut(s)	85, 86, 458
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	199, 200
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	8 cut(s)	113, 130, 269, 277, 306, 439, 511, 557
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	1 cut(s)	458
SmaI	CCCGGG	1 cut(s)	200
Sse9I	AATT	4 cut(s)	157, 193, 282, 370
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	2 cut(s)	272, 434
StyD4I	CCNGG	2 cut(s)	197, 198
TaiI	ACGT	2 cut(s)	306, 511
TaqI	TCGA	2 cut(s)	186, 191
TasI	AATT	4 cut(s)	157, 193, 282, 370
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	4 cut(s)	334, 428, 499, 564
TseI	GCWGC	1 cut(s)	242
TspMI	CCCGGG	1 cut(s)	198
TspRI	CASTG	4 cut(s)	334, 428, 499, 564
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	3 cut(s)	157, 193, 370
XmaI	CCCGGG	1 cut(s)	198
XspI	CTAG	2 cut(s)	272, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.