AT4G12340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017557
Physical Location & Seq
Reverse (-)
7321148 .. 7322510
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12340.1

Sequence Viewer

Length: 513 bp
ATGGGAGATTTCTCGATTCAGATCAGTTCTAAGCTGATCAATCAGCTAGCTGAAGGTAACGATCAACCAAAGAGGAGGGCAAAGAAAACCAAACCTAAAGTCTCACCACAGAGCAAACAGAAAACAAACCAAGATGAAGAGAAGAAACCTAATCCAGTGGCTGAATTACCGATGCAGCCACCGTTTTTCTTCCCAATACCACCACAAGGAGCAGCAAGCACAGAGCTGGAATCGATAAAATCCGTTGTGAAAGAGAGTGAGAAGGTTCTTGAGAAGCTGGAGTTACAAGAGAAGAACATTGTTCGTGAAGTTACGGAGAGAGCCAAGGATCTGAGGGAGAAAGAGTTTAAGATCCCGGAACCTAAACCAATGCCTTGTTCGTCAGATCACGAAGCCTGGATGAAATGCTACAAGGAGAACATCGGTAGTCCGTTGAAATGTAGCGGTTTCGTTAAGAGTTTCCAGGATTGTGCACGCCGGTCCAGACAGCAAGTGAATCCTGAAGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.44

Weight (kDa)

9.1

Isoelectric Point (pI)

62.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12340
fragaria_vesca FvH4_5g00490
malus_domestica MD04G1080500.v1.1
prunus_persica Prupe.4G260700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202021
rosa_laevigata RLG00000003633
rosa_roxburghii Rroxscaffold_3G00254940
rosa_samantha Rh7AG194600 Rh7BG196100 Rh7CG205900 Rh7DG201300
rosa_wichuraiana Rw7G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 444
AclWI GGATC 2 cut(s) 336, 346
AcuI CTGAAG 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 436
AjnI CCWGG 2 cut(s) 395, 462
AjuI GAANNNNNNNTTGG 2 cut(s) 361, 393
AluBI AGCT 5 cut(s) 34, 46, 50, 226, 277
AluI AGCT 5 cut(s) 34, 46, 50, 226, 277
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 471
AlwI GGATC 2 cut(s) 336, 346
AlwNI CAGNNNCTG 1 cut(s) 161
ApaLI GTGCAC 1 cut(s) 471
ApeKI GCWGC 2 cut(s) 175, 212
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AspS9I GGNCC 1 cut(s) 480
AsuC2I CCSGG 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 96
AsuNHI GCTAGC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 480
BaeGI GKGCMC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 187, 224
BciT130I CCWGG 2 cut(s) 397, 464
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 47
BisI GCNGC 2 cut(s) 176, 213
BlsI GCNGC 2 cut(s) 177, 214
Bme1390I CCNGG 3 cut(s) 356, 397, 464
Bme18I GGWCC 1 cut(s) 480
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 3 cut(s) 356, 397, 464
BmsI GCATC 1 cut(s) 162
BmtI GCTAGC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 356
Bsa29I ATCGAT 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 477
Bse1I ACTGG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 2 cut(s) 397, 464
BseCI ATCGAT 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 405
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 475
BseXI GCAGC 2 cut(s) 187, 224
BshVI ATCGAT 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 2 cut(s) 356, 478
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 475
Bsp143I GATC 6 cut(s) 21, 36, 61, 328, 351, 385
BspACI CCGC 1 cut(s) 444
BspCNI CTCAG 1 cut(s) 324
BspDI ATCGAT 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 360
BspOI GCTAGC 1 cut(s) 50
BspPI GGATC 2 cut(s) 336, 346
BsrFI RCCGGY 1 cut(s) 477
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 477
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 6 cut(s) 21, 36, 61, 328, 351, 385
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 397, 464
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 48, 217, 475
BstDEI CTNAG 2 cut(s) 30, 332
BstF5I GGATG 1 cut(s) 405
BstKTI GATC 6 cut(s) 24, 39, 64, 331, 354, 388
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 6 cut(s) 21, 36, 61, 328, 351, 385
BstNI CCWGG 2 cut(s) 397, 464
BstSCI CCNGG 3 cut(s) 354, 395, 462
BstSLI GKGCMC 1 cut(s) 475
BstV1I GCAGC 2 cut(s) 187, 224
BstX2I RGATCY 2 cut(s) 328, 351
BstYI RGATCY 2 cut(s) 328, 351
Bsu15I ATCGAT 1 cut(s) 233
BsuTUI ATCGAT 1 cut(s) 233
BtsCI GGATG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 3 cut(s) 48, 217, 475
CaiI CAGNNNCTG 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 480
ClaI ATCGAT 1 cut(s) 233
CviJI RGCY 9 cut(s) 34, 46, 50, 161, 178, 226, 277, 323, 395
CviKI_1 RGCY 9 cut(s) 34, 46, 50, 161, 178, 226, 277, 323, 395
DdeI CTNAG 2 cut(s) 30, 332
DpnI GATC 6 cut(s) 23, 38, 63, 330, 353, 387
DpnII GATC 6 cut(s) 21, 36, 61, 328, 351, 385
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 395, 462
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 176, 213
FokI GGATG 1 cut(s) 412
Fsp4HI GCNGC 2 cut(s) 176, 213
FspBI CTAG 1 cut(s) 47
GluI GCNGC 2 cut(s) 176, 213
GsuI CTGGAG 1 cut(s) 299
HapII CCGG 2 cut(s) 356, 478
HinfI GANTC 3 cut(s) 16, 230, 496
HpaII CCGG 2 cut(s) 356, 478
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 3 cut(s) 21, 333, 385
Hpy188III TCNNGA 6 cut(s) 13, 269, 305, 389, 483, 500
Hpy8I GTNNAC 1 cut(s) 473
HpyAV CCTTC 2 cut(s) 47, 256
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 175, 473
HpyF3I CTNAG 2 cut(s) 30, 332
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 6 cut(s) 21, 36, 61, 328, 351, 385
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 2 cut(s) 187, 224
LweI GCATC 1 cut(s) 162
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 3 cut(s) 56, 282, 310
MalI GATC 6 cut(s) 23, 38, 63, 330, 353, 387
MboI GATC 6 cut(s) 21, 36, 61, 328, 351, 385
MboII GAAGA 4 cut(s) 149, 154, 181, 304
MflI RGATCY 2 cut(s) 328, 351
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 1 cut(s) 164
MnlI CCTC 3 cut(s) 66, 69, 327
MseI TTAA 2 cut(s) 348, 453
MspI CCGG 2 cut(s) 356, 478
MspR9I CCNGG 3 cut(s) 356, 397, 464
MvaI CCWGG 2 cut(s) 397, 464
NciI CCSGG 1 cut(s) 356
NdeII GATC 6 cut(s) 21, 36, 61, 328, 351, 385
NheI GCTAGC 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 360
PfeI GAWTC 3 cut(s) 16, 230, 496
PfoI TCCNGGA 2 cut(s) 354, 462
PkrI GCNGC 2 cut(s) 177, 214
Psp6I CCWGG 2 cut(s) 395, 462
PspGI CCWGG 2 cut(s) 395, 462
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 480
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 2 cut(s) 328, 351
SaqAI TTAA 2 cut(s) 348, 453
SatI GCNGC 2 cut(s) 176, 213
Sau3AI GATC 6 cut(s) 21, 36, 61, 328, 351, 385
Sau96I GGNCC 1 cut(s) 480
ScrFI CCNGG 3 cut(s) 356, 397, 464
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 1 cut(s) 164
SsiI CCGC 1 cut(s) 444
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 354, 395, 462
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 14, 233
TasI AATT 1 cut(s) 164
TfiI GAWTC 3 cut(s) 16, 230, 496
Tru1I TTAA 2 cut(s) 348, 453
Tru9I TTAA 2 cut(s) 348, 453
TscAI CASTG 1 cut(s) 162
TseI GCWGC 2 cut(s) 175, 212
TspDTI ATGAA 2 cut(s) 150, 416
TspGWI ACGGA 3 cut(s) 232, 329, 420
TspRI CASTG 1 cut(s) 162
VneI GTGCAC 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 480
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.