MD04G1080500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0017557
Physical Location & Seq
Reverse (-)
11055107 .. 11058214
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1080500.v1.1.491

Sequence Viewer

Length: 540 bp
ATGGATAATTTTAGTATTCAGATTAGCTCCAATCTGGTTAATAAGCTTGTTGAGGATGCTGAGAAGTCAAAGAGGAAACCTAGAAGAACTAAAAAGGCAACACGAGAGCGTCCACAGCCCCAAGCGAAGATAACTCAGAAGCAGGGTTCTGATGACTCTGAAACACTCAAGGGGCCAGGTGCTAAAGGATGGCCTTTTCAGTCTCCTCTATTCGTGCCTGTAACGCCTCCTTCACAGTCACCCTATGAGGAGCTTGATGCCATCAGATCTGTTCTGCAAGAGAGCGAGAGGGTTGTGGAGCAGTTGCAGAAGCAGGAGGAGAACATGCTGCAGGAAGTGACACAAAAAGCCAAGGAACTTCGTGATAAGGAGTTCAAGCTTCCATTCCAGAAGCCTATGCCCTGCTCAAATGAAAAAGATGCTTGCTTGTCTTGCTACAAGGAGCATGCCGACAACCCTCTGAAATGTGCCGGTGTTGTTACAAGTTTTGAAAATTGCGCTCGCAGAATTAGGCAGCAAGTGGGTTCAGCAGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.35

Weight (kDa)

8.93

Isoelectric Point (pI)

66.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12340
fragaria_vesca FvH4_5g00490
malus_domestica MD04G1080500.v1.1
prunus_persica Prupe.4G260700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202021
rosa_laevigata RLG00000003633
rosa_roxburghii Rroxscaffold_3G00254940
rosa_samantha Rh7AG194600 Rh7BG196100 Rh7CG205900 Rh7DG201300
rosa_wichuraiana Rw7G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 376, 491
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 4 cut(s) 27, 46, 253, 379
AluI AGCT 4 cut(s) 27, 46, 253, 379
Alw26I GTCTC 1 cut(s) 207
AoxI GGCC 2 cut(s) 173, 191
ApeKI GCWGC 2 cut(s) 328, 514
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 231
BauI CACGAG 1 cut(s) 102
BbvI GCAGC 2 cut(s) 315, 526
BccI CCATC 2 cut(s) 183, 269
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 329
BglII AGATCT 1 cut(s) 266
BisI GCNGC 2 cut(s) 329, 515
BlsI GCNGC 2 cut(s) 330, 516
Bme1390I CCNGG 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 3 cut(s) 46, 247, 409
BpuEI CTTGAG 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 351
Bse118I RCCGGY 1 cut(s) 470
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 61, 194
BseMII CTCAG 2 cut(s) 51, 149
BseRI GAGGAG 3 cut(s) 195, 263, 332
BseXI GCAGC 2 cut(s) 315, 526
BshFI GGCC 2 cut(s) 175, 193
BsiSI CCGG 1 cut(s) 471
BsmAI GTCTC 1 cut(s) 207
BsnI GGCC 2 cut(s) 175, 193
Bsp143I GATC 1 cut(s) 266
BspANI GGCC 2 cut(s) 175, 193
BspCNI CTCAG 2 cut(s) 52, 148
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 470
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 351
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 424, 447, 502
BstDEI CTNAG 2 cut(s) 60, 135
BstF5I GGATG 2 cut(s) 61, 194
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 1 cut(s) 269
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 3 cut(s) 115, 223, 432
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 2 cut(s) 328, 449
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 315, 526
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 2 cut(s) 175, 193
BtsCI GGATG 2 cut(s) 61, 194
Cac8I GCNNGC 3 cut(s) 424, 447, 502
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 98
CviAII CATG 2 cut(s) 325, 446
CviJI RGCY 9 cut(s) 27, 46, 118, 175, 193, 253, 350, 379, 394
CviKI_1 RGCY 9 cut(s) 27, 46, 118, 175, 193, 253, 350, 379, 394
DdeI CTNAG 2 cut(s) 60, 135
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 328, 449
FaiI YATR 4 cut(s) 246, 326, 398, 447
FatI CATG 2 cut(s) 324, 445
Fnu4HI GCNGC 2 cut(s) 329, 515
FokI GGATG 2 cut(s) 68, 201
Fsp4HI GCNGC 2 cut(s) 329, 515
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 499
GluI GCNGC 2 cut(s) 329, 515
HaeIII GGCC 2 cut(s) 175, 193
HapII CCGG 1 cut(s) 471
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 500
Hin1II CATG 2 cut(s) 328, 449
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HindIII AAGCTT 2 cut(s) 44, 377
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 471
HphI GGTGA 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 6 cut(s) 21, 138, 151, 160, 266, 462
Hpy188III TCNNGA 2 cut(s) 362, 388
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 277, 307, 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 223, 432
HpyF3I CTNAG 2 cut(s) 60, 135
Hsp92II CATG 2 cut(s) 328, 449
HspAI GCGC 1 cut(s) 498
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 4 cut(s) 32, 250, 298, 442
Lsp1109I GCAGC 2 cut(s) 315, 526
LweI GCATC 3 cut(s) 46, 247, 409
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 4 cut(s) 220, 237, 337, 478
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 2 cut(s) 96, 139
MflI RGATCY 1 cut(s) 266
MluCI AATT 3 cut(s) 7, 493, 507
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 8 cut(s) 46, 66, 216, 237, 241, 282, 310, 468
MseI TTAA 1 cut(s) 39
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 115, 223, 432
NdeII GATC 1 cut(s) 266
NlaIII CATG 2 cut(s) 328, 449
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 2 cut(s) 237, 337
NspI RCATGY 2 cut(s) 328, 449
PaeI GCATGC 1 cut(s) 449
PkrI GCNGC 2 cut(s) 330, 516
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 333
PsuI RGATCY 1 cut(s) 266
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 329, 515
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 177
SetI ASST 6 cut(s) 29, 48, 82, 181, 255, 381
SfaNI GCATC 3 cut(s) 46, 247, 409
SfcI CTRYAG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SphI GCATGC 1 cut(s) 449
Sse9I AATT 3 cut(s) 7, 493, 507
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 237
TasI AATT 3 cut(s) 7, 493, 507
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseFI GTSAC 2 cut(s) 237, 337
TseI GCWGC 2 cut(s) 328, 514
Tsp45I GTSAC 2 cut(s) 237, 337
TspDTI ATGAA 1 cut(s) 426
XceI RCATGY 2 cut(s) 328, 449
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.