FvH4_5g00490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017557
Physical Location & Seq
Forward (+)
313602 .. 316391
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00490.t1

Sequence Viewer

Length: 693 bp
TCCCCATCATTTTACCTCTATTTACAACTCCACCTACACACTCTCTCTTCTCTCTCTCGGCGATGCCCATACCGAGCTGAACCAACTCCGGCCCAACCGTCCTTCCTTCTGTTCCTTTCTTCCAGGTATCTTATCAGGAGTTCTACCATGGGTGATTTTAGTATTCAGCTTAGCACCAATTTGGTGAATAGGCTTGTGGATGACCCTGAGAAATCAAAGAAGAAAACCAGAAGAACTAAACCTAAGGTAACCCGAGAGCCTCAGCAGCCCCAACCGAAGATAAACCAGAAGAAGGTTTCTGATGATTCTGAACCACTCAAAGATTCAGGTGCTAGAGGATGGCCTATCCAGCCTTCTGTATACATGCCCGTACCCCCTCCTTCACAGCCTACCAGTGCAGACTTGGATGCAATCAGATCTGTTCATGAAGAGAGTTTGAAAGTTGTGGAGCATTTGAAGAAGCTGGAGGAGAACATGGCACAGGAGGTGACACAAAGAGCAAAGGAGCTTCGTGACAAGGAGTTCAAGCTCCCATACCAGAAGCCTGTTCCCTGCCTAGCTCAGAAAGATGCTTGCGTGAATTGCTACAAGGAGCATGGGAAGGAGGATCCTCTCAAGTGTGCTGGTTTTGTTAACAGTTATGCAAATTGCACTCGCAGAGTTAGGCAGCAAGTCAGTTCGGGAAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

26.22

Weight (kDa)

9.51

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12340
fragaria_vesca FvH4_5g00490
malus_domestica MD04G1080500.v1.1
prunus_persica Prupe.4G260700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202021
rosa_laevigata RLG00000003633
rosa_roxburghii Rroxscaffold_3G00254940
rosa_samantha Rh7AG194600 Rh7BG196100 Rh7CG205900 Rh7DG201300
rosa_wichuraiana Rw7G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 360
AclWI GGATC 2 cut(s) 602, 615
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 3 cut(s) 439, 457, 526
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 6 cut(s) 77, 169, 463, 508, 529, 560
AluI AGCT 6 cut(s) 77, 169, 463, 508, 529, 560
AlwI GGATC 2 cut(s) 602, 615
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 2 cut(s) 90, 341
ApeKI GCWGC 2 cut(s) 265, 667
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 3 cut(s) 164, 196, 499
AvaI CYCGRG 1 cut(s) 252
AxyI CCTNAGG 1 cut(s) 243
BamHI GGATCC 1 cut(s) 607
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 277, 679
BccI CCATC 2 cut(s) 13, 333
BciT130I CCWGG 1 cut(s) 124
BfaI CTAG 2 cut(s) 333, 557
BglII AGATCT 1 cut(s) 416
BisI GCNGC 2 cut(s) 266, 668
BlpI GCTNAGC 1 cut(s) 170
BlsI GCNGC 2 cut(s) 267, 669
Bme1390I CCNGG 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 3 cut(s) 53, 397, 559
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 599
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 393
Bse21I CCTNAGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 3 cut(s) 205, 344, 412
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 3 cut(s) 198, 275, 575
BseNI ACTGG 1 cut(s) 393
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 2 cut(s) 277, 679
BsgI GTGCAG 1 cut(s) 417
BshFI GGCC 2 cut(s) 92, 343
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 292
BsnI GGCC 2 cut(s) 92, 343
BsoBI CYCGRG 1 cut(s) 252
Bsp143I GATC 2 cut(s) 416, 607
Bsp1720I GCTNAGC 1 cut(s) 170
Bsp19I CCATGG 1 cut(s) 147
BspANI GGCC 2 cut(s) 92, 343
BspCNI CTCAG 3 cut(s) 199, 274, 574
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 609
BspPI GGATC 2 cut(s) 602, 615
BsrI ACTGG 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 2 cut(s) 416, 607
BssNAI GTATAC 1 cut(s) 361
BssT1I CCWWGG 1 cut(s) 147
Bst1107I GTATAC 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 99, 638
Bst6I CTCTTC 2 cut(s) 52, 423
BstC8I GCNNGC 1 cut(s) 574
BstDEI CTNAG 5 cut(s) 170, 207, 243, 261, 561
BstDSI CCRYGG 1 cut(s) 147
BstEII GGTNACC 1 cut(s) 247
BstF5I GGATG 3 cut(s) 205, 344, 412
BstKTI GATC 2 cut(s) 419, 610
BstMBI GATC 2 cut(s) 416, 607
BstMWI GCNNNNNNNGC 3 cut(s) 265, 349, 582
BstNI CCWGG 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 367
BstPI GGTNACC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 277, 679
BstX2I RGATCY 2 cut(s) 416, 607
BstYI RGATCY 2 cut(s) 416, 607
BstZ17I GTATAC 1 cut(s) 361
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 2 cut(s) 92, 343
BtgI CCRYGG 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 3 cut(s) 205, 344, 412
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 574
CciI TCATGA 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 371
CviAII CATG 5 cut(s) 148, 364, 425, 475, 596
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 5 cut(s) 170, 207, 243, 261, 561
DpnI GATC 2 cut(s) 418, 609
DpnII GATC 2 cut(s) 416, 607
Eam1104I CTCTTC 2 cut(s) 52, 423
EarI CTCTTC 2 cut(s) 52, 423
Eco130I CCWWGG 1 cut(s) 147
Eco81I CCTNAGG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 5 cut(s) 151, 367, 428, 478, 599
FaiI YATR 9 cut(s) 70, 149, 361, 365, 426, 476, 535, 597, 642
FatI CATG 5 cut(s) 147, 363, 424, 474, 595
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 2 cut(s) 266, 668
FokI GGATG 3 cut(s) 212, 351, 419
Fsp4HI GCNGC 2 cut(s) 266, 668
FspBI CTAG 2 cut(s) 333, 557
GluI GCNGC 2 cut(s) 266, 668
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 2 cut(s) 92, 343
HapII CCGG 1 cut(s) 89
Hin1II CATG 5 cut(s) 151, 367, 428, 478, 599
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 2 cut(s) 305, 323
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 1 cut(s) 89
HphI GGTGA 3 cut(s) 164, 196, 499
Hpy166II GTNNAC 2 cut(s) 361, 634
Hpy188I TCNGA 4 cut(s) 301, 310, 416, 564
Hpy188III TCNNGA 4 cut(s) 136, 425, 512, 681
Hpy8I GTNNAC 2 cut(s) 361, 634
HpyAV CCTTC 6 cut(s) 112, 116, 286, 363, 390, 595
HpyCH4III ACNGT 2 cut(s) 99, 638
HpyCH4V TGCA 4 cut(s) 398, 410, 644, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 349, 582
HpyF3I CTNAG 5 cut(s) 170, 207, 243, 261, 561
Hsp92II CATG 5 cut(s) 151, 367, 428, 478, 599
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 2 cut(s) 416, 607
LmnI GCTCC 4 cut(s) 448, 505, 534, 592
Lsp1109I GCAGC 2 cut(s) 277, 679
LweI GCATC 3 cut(s) 53, 397, 559
MaeI CTAG 2 cut(s) 333, 557
MaeIII GTNAC 3 cut(s) 247, 487, 512
MalI GATC 2 cut(s) 418, 609
MboI GATC 2 cut(s) 416, 607
MboII GAAGA 8 cut(s) 39, 111, 232, 243, 289, 301, 440, 469
MflI RGATCY 2 cut(s) 416, 607
MluCI AATT 3 cut(s) 178, 580, 646
MnlI CCTC 8 cut(s) 26, 270, 329, 387, 460, 478, 598, 621
MseI TTAA 1 cut(s) 633
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 265, 349, 582
NcoI CCATGG 1 cut(s) 147
NdeII GATC 2 cut(s) 416, 607
NlaIII CATG 5 cut(s) 151, 367, 428, 478, 599
NlaIV GGNNCC 1 cut(s) 609
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 2 cut(s) 487, 512
NspI RCATGY 1 cut(s) 367
PagI TCATGA 1 cut(s) 424
PfeI GAWTC 2 cut(s) 305, 323
PkrI GCNGC 2 cut(s) 267, 669
Psp6I CCWGG 1 cut(s) 122
PspEI GGTNACC 1 cut(s) 247
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 609
PspPI GGNCC 1 cut(s) 91
PsuI RGATCY 2 cut(s) 416, 607
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 2 cut(s) 266, 668
Sau3AI GATC 2 cut(s) 416, 607
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 124
SfaNI GCATC 3 cut(s) 53, 397, 559
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
Sse9I AATT 3 cut(s) 178, 580, 646
SspMI CTAG 2 cut(s) 333, 557
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 99, 638
TasI AATT 3 cut(s) 178, 580, 646
TfiI GAWTC 2 cut(s) 305, 323
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 2 cut(s) 487, 512
TseI GCWGC 2 cut(s) 265, 667
Tsp45I GTSAC 2 cut(s) 487, 512
TspDTI ATGAA 2 cut(s) 413, 441
TspRI CASTG 1 cut(s) 400
XceI RCATGY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 2 cut(s) 333, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.