Prupe.4G260700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017557
Physical Location & Seq
Reverse (-)
18844526 .. 18847766
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G260700.1

Sequence Viewer

Length: 543 bp
ATGGGTGATTTTAGCATTCAGATTAGCTCCAATCTGGTTGACAAGCTTGTTCATGATGCTGAGAAGTCAAAGAGAAAACCCAGAAGAACTAAAATTAAGGTACCACGAGAGCCTCAAGAGCCCCAAACGAAAACAAACCAGAAACAGGTTTCTGATAATTCTGAAACACCCAAGGGGACAGGTGCTAAAGGATGGCCTCTTCAGCCTCCTATATTCGTGCCTGTAACCCCTCCTTCACAATCTACCTATGCGGAGTTAGATGCTATCAGATCTGTTCTTCAAGAGAGCGAGAGGGTTCTGGAGCGGTTGCAGAAGCAGGAGGAGAATATGGTGCAGGAAGTGACACAAAGAGCAAAGGAACTTCATGATAAGGAGTTCAAGCTTCCATTCCAGAAGCCTATGCCCTGCTTATCGGAGAAGGATGCTTGCTTGGCTTGCTACAAGGAGCATGCCGACAACCCTCTGAAATGCGCTGGTTTTGTCAAAAGTTTTGAAGATTGTGCTCGCAGAATTAGGCAGCAAGTGGGTTCAGCAGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.49

Weight (kDa)

8.93

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12340
fragaria_vesca FvH4_5g00490
malus_domestica MD04G1080500.v1.1
prunus_persica Prupe.4G260700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202021
rosa_laevigata RLG00000003633
rosa_roxburghii Rroxscaffold_3G00254940
rosa_samantha Rh7AG194600 Rh7BG196100 Rh7CG205900 Rh7DG201300
rosa_wichuraiana Rw7G017050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 304
AciI CCGC 2 cut(s) 251, 304
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 3 cut(s) 281, 379, 494
AluBI AGCT 3 cut(s) 27, 46, 382
AluI AGCT 3 cut(s) 27, 46, 382
Alw21I GWGCWC 1 cut(s) 505
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 517
Asp718I GGTACC 1 cut(s) 100
AspLEI GCGC 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 123
BauI CACGAG 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 529
BccI CCATC 1 cut(s) 186
BglII AGATCT 1 cut(s) 269
BisI GCNGC 1 cut(s) 518
BlsI GCNGC 1 cut(s) 519
BmiI GGNNCC 1 cut(s) 102
BmsI GCATC 3 cut(s) 46, 250, 412
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 197, 427
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 1 cut(s) 529
BsgI GTGCAG 1 cut(s) 353
BshFI GGCC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 505
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 123, 505
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 2 cut(s) 251, 304
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 52
BspHI TCATGA 2 cut(s) 52, 364
BspLI GGNNCC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 100
BsrBI CCGCTC 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 4 cut(s) 427, 436, 450, 505
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 197, 427
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 4 cut(s) 118, 202, 431, 435
BstNSI RCATGY 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 529
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 197, 427
Cac8I GCNNGC 4 cut(s) 427, 436, 450, 505
CciI TCATGA 2 cut(s) 52, 364
CfoI GCGC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 101
CviAII CATG 3 cut(s) 53, 365, 449
CviJI RGCY 9 cut(s) 27, 46, 112, 121, 196, 205, 382, 397, 434
CviKI_1 RGCY 9 cut(s) 27, 46, 112, 121, 196, 205, 382, 397, 434
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 3 cut(s) 56, 368, 452
FaiI YATR 7 cut(s) 54, 212, 249, 329, 366, 401, 450
FaqI GGGAC 1 cut(s) 190
FatI CATG 3 cut(s) 52, 364, 448
Fnu4HI GCNGC 1 cut(s) 518
FokI GGATG 2 cut(s) 204, 434
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 518
GlaI GCGC 1 cut(s) 472
GluI GCNGC 1 cut(s) 518
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 196
HhaI GCGC 1 cut(s) 473
Hin1II CATG 3 cut(s) 56, 368, 452
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 2 cut(s) 44, 380
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 6 cut(s) 21, 154, 163, 269, 415, 465
Hpy188III TCNNGA 6 cut(s) 53, 116, 281, 299, 365, 391
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 243, 412
HpyCH4V TGCA 2 cut(s) 310, 334
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 202, 431, 435
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 3 cut(s) 56, 368, 452
HspAI GCGC 1 cut(s) 471
KpnI GGTACC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 3 cut(s) 32, 301, 445
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 3 cut(s) 46, 250, 412
MaeIII GTNAC 2 cut(s) 223, 340
MalI GATC 1 cut(s) 271
MbiI CCGCTC 1 cut(s) 304
MboI GATC 1 cut(s) 269
MboII GAAGA 4 cut(s) 96, 191, 269, 506
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 2 cut(s) 123, 505
MluCI AATT 3 cut(s) 93, 157, 510
MnlI CCTC 7 cut(s) 123, 207, 216, 240, 285, 313, 471
MseI TTAA 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 15
MwoI GCNNNNNNNGC 4 cut(s) 118, 202, 431, 435
NdeII GATC 1 cut(s) 269
NlaIII CATG 3 cut(s) 56, 368, 452
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 452
PaeI GCATGC 1 cut(s) 452
PagI TCATGA 2 cut(s) 52, 364
PctI GAATGC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 518
Sau3AI GATC 1 cut(s) 269
SduI GDGCHC 2 cut(s) 123, 505
SetI ASST 7 cut(s) 29, 48, 102, 150, 184, 248, 384
SfaNI GCATC 3 cut(s) 46, 250, 412
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
SphI GCATGC 1 cut(s) 452
Sse9I AATT 3 cut(s) 93, 157, 510
SsiI CCGC 2 cut(s) 251, 304
StyI CCWWGG 1 cut(s) 171
TasI AATT 3 cut(s) 93, 157, 510
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 41, 353
XceI RCATGY 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.